LOCUS       XM_039102729            8866 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus unc-5 netrin receptor C (Unc5c),
            transcript variant X4, mRNA.
ACCESSION   XM_039102729
VERSION     XM_039102729.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039102729.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8866
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8866
                     /gene="Unc5c"
                     /note="unc-5 netrin receptor C; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 25
                     ESTs, 1 long SRA read, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:362049"
                     /db_xref="RGD:735109"
     CDS             62..2482
                     /gene="Unc5c"
                     /codon_start=1
                     /product="netrin receptor UNC5C isoform X4"
                     /protein_id="XP_038958657.1"
                     /db_xref="GeneID:362049"
                     /db_xref="RGD:735109"
                     /translation="MLSTLEQIPVILSLLYYILDLRKTFEQEPLGKEVSLEQEVLLQC
                     RPPEGIPMAEVEWLKNEDIIDPVEDRNFYITIDHNLIIKQARLSDTANYTCVAKNIVA
                     KRKSTTATVIVYVNGGWSTWAEWSVCNSRCGRGYQKRTRTCTNPAPLNGGAFCEGQSV
                     QKIACTTLCPVDGRWTSWSKWSTCGTECTHWRRRECTAPAPKNGGKDCDGLVLQSKNC
                     TDGLCMQGFIYPISTEHRTQSEYGFSSAPDSDDVALYVGIVIAVTVCLAITVVVALFV
                     YRKNHRDFESDIIDSSALNGGFQPVNIKAARQDLLAVPPDLTSAAAMYRGPVYALHDV
                     SDKIPMTNSPILDPLPNLKIKVYNSSGAVTPQDDLAEFSSKLSPQMTQSLLENEALNL
                     KNQSLARQTDPSCTAFGTFNSLGGHLIIPNSGVSLLIPAGAIPQGRVYEMYVTVHRKE
                     NMRPPMEDSQTLLTPVVSCGPPGALLTRPVILTLHHCADPNTEDWKIQLKNQAVQGQW
                     EDVVVVGEENFTTPCYIQLDAEACHILTENLSTYALVGQSTTKAAAKRLKLAIFGPLC
                     CSSLEYSIRVYCLDDTQDALKEVLQLERQMGGQLLEEPKALHFKGSIHNLRLSIHDIT
                     HSLWKSKLLAKYQEIPFYHIWSGSQRNLHCTFTLERLSLNTVELVCKLCVRQVEGEGQ
                     IFQLNCTVSEEPTGIDLPLLDPASTITTVTGPSAFSIPLPIRQKLCSSLDAPQTRGHD
                     WRMLAHKLNLDRYLNYFATKSSPTGVILDLWEAQNFPDGNLSMLAAVLEEMGRHETVV
                     SLAAEGQY"
ORIGIN      
        1 ttgggacagc caacgccact cttttttaca tcttgatgaa tgtcaatgaa gcaactcaac
       61 tatgttatca accttagaac aaattccagt catcttgtct ctgctctact atatactaga
      121 tctgcggaag acatttgagc aggaaccctt gggaaaagaa gtgtccttgg agcaggaagt
      181 gttactccag tgccggccac ctgaagggat cccaatggct gaggtggagt ggctaaagaa
      241 tgaagacata attgatcctg tcgaagatcg gaatttttat atcactatcg atcacaacct
      301 gatcatcaag caggcacgac tctcagatac agcgaattat acctgtgttg ccaaaaacat
      361 tgttgccaag aggaaaagca ccacagccac cgtcatcgtg tatgttaatg gtggctggtc
      421 cacctgggca gaatggtctg tgtgtaacag ccgctgtggg cgaggatatc agaaacgcac
      481 aagaacctgc accaacccag cccccctcaa tggtggggcc ttctgcgagg ggcagagtgt
      541 acagaaaata gcatgcacca cgttatgccc agtggatggc aggtggactt cgtggagcaa
      601 atggtcaact tgtgggactg agtgcaccca ctggcggagg agggagtgta cagcaccagc
      661 ccccaagaac gggggtaagg actgtgatgg cctggtcctc caatccaaga actgcaccga
      721 tgggctgtgc atgcagggat tcatttaccc catttcaact gagcacagaa cccagagtga
      781 atatggattt tcttctgctc ctgactcaga tgacgttgct ctctacgttg ggattgtgat
      841 cgctgtaacc gtttgtctgg caatcactgt tgtggtggcc ctgttcgtgt atcgcaagaa
      901 ccaccgtgac tttgagtctg atatcattga ctcctcagca ctcaatggcg gctttcagcc
      961 tgtgaacatc aaggctgcca gacaagatct cctggcagta cccccggatc tcacctcagc
     1021 tgcagccatg tacaggggac ccgtctatgc tctgcatgat gtctcagaca aaatcccaat
     1081 gaccaattct ccaattctag acccactgcc caatttgaaa atcaaagtgt acaacagctc
     1141 aggtgctgtc actcctcagg acgaccttgc tgagttctca tccaagctgt caccccagat
     1201 gacccaatcc ttgctagaga atgaggccct gaacctgaag aaccagagtc tcgcaagaca
     1261 gactgaccca tcctgcacag cgtttggcac cttcaactcc ctgggcggtc acctcatcat
     1321 ccctaattca ggagtaagct tgctgattcc cgctggggcc attcctcagg ggagagtcta
     1381 tgaaatgtat gtgactgtac acaggaaaga aaatatgagg ccccccatgg aagactctca
     1441 gaccctgctg acccctgtgg tgagctgtgg gcctcctgga gctctgttga cccgtcctgt
     1501 catcctcact ctgcatcact gtgcagaccc taacaccgag gactggaaga tccagctcaa
     1561 aaaccaggca gtgcagggac agtgggagga tgttgtggtt gttggagagg aaaacttcac
     1621 aaccccctgt tacattcagc tggatgcaga ggcttgccat attctcacgg agaacctcag
     1681 tacctatgcc ctggttgggc agtccaccac caaagcagct gccaagcgtc tgaagctggc
     1741 catctttggg cccctctgct gctcttccct ggagtatagc atcagagtct actgcctgga
     1801 tgacacacag gatgccctga aggaagttct acaactggaa aggcaaatgg gaggacagct
     1861 cctagaagaa cccaaggctc ttcattttaa aggcagcatc cacaacctgc gcctctcaat
     1921 tcatgacatc acccattccc tctggaagag caaattgctg gctaagtatc aggaaattcc
     1981 attttaccac atctggagtg gctctcaaag aaacctccac tgtaccttca ctctggaaag
     2041 actcagccta aacacagtag agctggtttg caaactctgt gtgcggcagg ttgaaggaga
     2101 agggcagatc ttccagctca actgtactgt gtcagaggaa cctactggta tcgatttgcc
     2161 tctcctggac cctgctagca ccattaccac tgtcactgga ccaagtgctt tcagcatccc
     2221 tcttcctatc cggcagaagc tatgtagcag cctggatgcc ccccaaacaa gaggccatga
     2281 ctggaggatg ctggcccaca aacttaacct ggacaggtac ttgaattact ttgccaccaa
     2341 atcgagcccg actggcgtaa tcctggatct ctgggaagca cagaacttcc ccgatggaaa
     2401 cctgagcatg ctggcagccg tcctggaaga aatgggaaga cacgaaaccg tagtgtcctt
     2461 ggcagcagaa ggtcagtatt gaccacaccg gaaccgacac tgaaggacaa aattacacag
     2521 ggagtctgtg ttcaggggaa ccacatctga ggaggaaatc cagataggac caaggcgctt
     2581 tacaggcaag atggcaacag gaaacgtggg ggacagatac aaccaccaag gtacacgccc
     2641 acttcattcg gacagtacca ccacgggagc taaggaaaac aatgtgtaaa tttgtacctt
     2701 gaatttaaca atcaatctaa ttttctcttc attgggctgt atgctgtatg gtacaggatc
     2761 ttacagtttc ctaggaaacg ctttatattg ctatccagat gtatggataa actttcttaa
     2821 caaacccagt ttctacaaat gttgtttaca tcaaattgga cagggatgca gacgctgtcc
     2881 atggctcgtt ctatttttgt tcagatcatt tgaagttgaa gctgtggacg gttgattgtg
     2941 tctatttcag attagtaatt tacagagaaa tcacagactt tttgctacaa attgtgtaca
     3001 tcgagtgtct cagataatct tcccatcagt gttctgtttc tgaaacttgt tggaccagta
     3061 ttgccattgg tatcagggaa gtggagaatc tcaatgtaaa ggagaaattg ctaaaattcc
     3121 ttacgtgatg ggggggcccg gtcggtgtcc tttgggaaca acctttgctg tggtattaca
     3181 gggaaggtag cgactcaggt ccctccacac aaacatttct gtgtcacgtg tgtgtttgta
     3241 ataagcaatt tcaagtgttt tttgaaaaag tattatcatt attactgatg attatcacaa
     3301 ctattctagt gaaaagattt ttcttttgtt ttagttagca atactgttag tgtttggtgt
     3361 tgactgggcc tgcctccctt tcttgcctaa agaggtggga tatggtcacc agtttagttc
     3421 aatagctttt gcttccttga cctttgacct actattctgt ggtggaaaag acaaaaatgc
     3481 tcagtggcta tgtctgctct ttcagcttgc ttggtcagag cctttctcct cttgctctta
     3541 tcatgaggag agttctctat gtaaagttca tttacttttg tggctgtctt tctgggaggc
     3601 agtgggactg tgggtaacag tgaactagga atcaggaaaa gttatccttg tgaagttggt
     3661 cactgtctgg ctgtgtgact ttggggagaa ccctgagagt cactggagct cattgtcctt
     3721 ctatgtaaac aatggagacc agatcatctc aaggttccag catgctgata tcccattggg
     3781 atatcatcag ccttttacat cttgcaggca ggattgactt gaaaggggga tgacttcaac
     3841 atgcatttat ttgtttgcct ttgtctttgt atcatcgttg catgatgttc accgagagag
     3901 ggcatccttt tcttattgtc ttgacctcta gtggggccct accctccagc cgaccaacta
     3961 attgtaaatt ctactttacc catttattga tctctagatc tcaagaccat ttctactaaa
     4021 agcccatgca gctgaaggac tcggtaccat ttttcttcct ttattaatct ttgctttaat
     4081 aatatgcagt tgtatttaca gccttttatt atccctttaa ccctataaaa tgttgtacat
     4141 accacaagtt ctccttggga ccatcttggt tttggtttgt ttgtttcttt ggggcttttt
     4201 gttgttgttg ttttgttttg ttttgttttt gatataggaa ctccattcag cagatggtga
     4261 atgaaaactt agcaacccca tagttacagt tgcagttaaa taggaagcac ccgtgtcctt
     4321 aagtcagaga cttcaaaatg tggctgtggt atactttggg gctggaagta tccaggttgc
     4381 tgagtggatt ccagttggga atcgttttgc ctaatgctcc ctccaattct tttacttcct
     4441 gatactctcc gtcccttcca ctgtagtcat taaggaacca tggaaacagt tgcggagact
     4501 tccttcacgg tgtttttctt ctctttcaga gatgtatcct ccaatctctc taacctcatt
     4561 catatgtaag actcctggtt ccactggtgg tgggaggcga attctatact cctatgaaag
     4621 cccagtggct gatgtctaga actatgagtt tgtttgaatt tttaagagtt tgatagatat
     4681 tcttaaaaag caagaggaag aaagacagtc attgctgcct cttgaaacaa aggtgtggat
     4741 gttcctcttc gctacttgga ttttggaacc atccaagtaa tccaaactga gagatcttga
     4801 ctggatattc tgtgtaactt caatgctttg tgctaagtca agagagacaa acatgttgct
     4861 gttctggata atttatccta aaaacccgtt aagtaaccat catagacata ctgaatataa
     4921 ccaaagcaac attattgagt cttttcagag tcctcatgtt caagcatcta gagatactgg
     4981 cttttctatt cagactctca caacaggaaa aggaaacatt actgatatct tatgaaggaa
     5041 tcatttgtca taaaactact tttctgtcat gcgaatgaca gtttccaaac tagaacatac
     5101 caaacatcaa ataatttcct cttaagcagt ctgctctttc tccttaggaa gaaaataata
     5161 gttgttagat tgctgctttc caacacacca ggttcacctg gcatagttca ttttagaggg
     5221 agcttcatca tcacctctgt ggcatgtctg acttctacag agcttctgag gaaagccttg
     5281 cttgctctgg gtgggttaaa aaaaactaat tatttgtgca tggtgccatc tagtggcctg
     5341 ccacatagtt actcaatttt acatacagct tacaaaaagt tgacagttaa gtacctgtgg
     5401 agtttgacat aacatttgtg acagacgtgg gggaatttac ccacgtgcgt aactctctta
     5461 ttctcatatt cttcagttaa atcatctatt ccacaatttt ctgggtatat tacctcatca
     5521 aattactcat tcacacctta agttattttc tagtaataga catatatgga atctatatta
     5581 aaaagtctct gaaagttgtc attctttatt tatgaatgcc attgggtttt gcatatttta
     5641 aatcttttaa ttccaaaaca ttaactttta gaagcataag ctctagtcac aaagaagccc
     5701 ccctgtccac catctccaca tacatataca aacgcatggc atcccctttg gggttttgtt
     5761 atttgattta ctattttgat atatattctt actaggtatt ccagaacacc ctcaaatcca
     5821 tcaccctatt gcccctgcct ctctcatgtg gtgggagttt aagtatgtac catagacctg
     5881 cttcaacctg ctctgcatct ggaaatgaga gtcctgtgtc tatggatgtg ggagttgtgg
     5941 ctgttaatca aggtgatact ctttcaatga agtagacttt ctgagatcag gaatctaacg
     6001 ctccatgacc tcatcttatt gttatgacat taattcaaat gggcttgagt acatgagtag
     6061 aagggtgtgt caagaaagtc acagcccaaa catcttcaaa gcactcacat tgtctctgct
     6121 acacaagaac ttcatcctga cctgagcaaa ttaatctctt cggggaaaga ataatttggg
     6181 agatgagagg tccaagatca aagtatagca ttagctattt tcacatatgc tatgagtcta
     6241 tagattttaa ttattccact atcaaagagt agagacattc ttgagggaaa agttgtcata
     6301 gctatattta ggatcctcta ggaaacaggt attaaagaca tttcttctaa aagtgtttga
     6361 aaaggaaacc ttcagagggt gggatttaga cagttcatat ctggagcagg gtagatggtt
     6421 gctacatctc tgtgtgtctc cgatgaggac ttggcagctg tgatcctgca tcattcacac
     6481 ctccatagcc acaggacaaa ggagagctta taaggttgat gtcctgcccc agaatccata
     6541 catatgccta cagtctgtgc tctggagcca atcagtgtag aaggatgttg aacaatatga
     6601 gagaacaagt agaaaagatt gacttgttgc gagtctccaa gatgaacatg aatttgagct
     6661 gagtaattgc tccagaaaag agatccattc agagatagat actaatgcaa gtccaaggcc
     6721 agggtggcaa aggagggact acagaaacac agtggggggt ggaattaggc ttgagatgcc
     6781 ttttctgaga agctttgtaa atcagaacac cattgttcaa atcagtcatt tgtaaagatg
     6841 ataatggcca atgagcatct tattttatag atccaaaaga aaaatatttt tattattatt
     6901 ctcaagataa taaaactggt tttgccttct gagtgcctcg tgggaccaac tatcttattc
     6961 ctttagtttt gtattgtttt tgtattttta aagcatactg agctgacatt gacttataac
     7021 tcttacaact ctctgtacaa cagagtactg tttctctgcc ccaagagatc cgattgtacc
     7081 acctctgcaa cagttacctg agaatttcct gatgtaattg ggactatgag gaatacattt
     7141 attatgttca tatgggctaa gtaagccata tgaagttatg tttcccaaaa tctgacactt
     7201 atgtaagctt tgttaaatga gtagagatgg cctgcatgta cctgggtgga gtatctcgtc
     7261 aaactaacag tgtggttgtg aatcctttag tccttttgaa caaatggttg cccttttttc
     7321 ctgaaaacct attgcaatgg tcttcagaaa gtccagtggg cttggctgct tcctttattg
     7381 atctgtggtg ggatattaac gggcttattc aaccaaaggt attttcagag gcctatttca
     7441 gtatggctgg ggtatcctca ggacaaataa gacatactcc ataaacatgc tagcaggtaa
     7501 agccaatgaa atgtaagagg tgacctgcaa gtcttcagta tacacaacta tgaaggaatc
     7561 tatcccaaga attaccagaa tcctaaattg gaagctcctg ccatatatca ggaccgtcat
     7621 ggccaacccc actagttgtt aagcagaaaa ccagggactg tcctgagata caatcagctg
     7681 tccaccagcc atgttattta ctacggtaca ccagcttttt atatatcatt tgggaacctg
     7741 tgctagagca gaattataaa ttgcaggcta tcatactgta tgacccattt taaataagcc
     7801 taaactccat gtcatcctta catgccaaag gcctaatgcc atggagcccg atgacaccca
     7861 gccatggtga ctgaactgtg ggctggttgt cctgatgggc agcctaaggg acgagctctc
     7921 tgcctttgat cttcactcag catgaagatg tggcaacatc aaagcatcat gatgagccct
     7981 gtgctatgtt aaagcaattt taagatggcg tacgaaacaa attcacagct agtagaacat
     8041 acctttgccc tttctgtgtt cctaaagtca tcaatggcac ccataactgc acatatatgg
     8101 attcagacat ttttttctcc agattattgg aaagaaagaa gagccagtta aacacatgac
     8161 ttgcgttctt tctttcactt gttcctagtc ctactatggg tattgatgcc cttacctttc
     8221 agacaatgta tttagccaag ttgcagggaa tatcattact ctgtgtgtgt gtgtgtgtgt
     8281 gtgtgtgtgt gtgtgtgtgt gtgtgtgtta gatgtcacag tgttgtgtgt attaagctta
     8341 atgttgagct gtaaggaacc agtcatcttc ctccttgttc taaagaagaa aacccatatt
     8401 catcagagaa caatccccag cttgctgcta aaaagaggct gggtcaccct cctgctgtct
     8461 tctttggacc aggtcaactt cagaagtatc aggttgaaat tttaagctct gtcagttttt
     8521 tttttccctt cttttagcaa aacaacatga ccttggcttc ccagatatgg aacccttcct
     8581 tcctttgtta cagaattctg tcttgctgta tcttctatgc aattcctttt ctaatgaccc
     8641 ctagtggctg aggagtgctc tgcagcactc cgcttgtcgc cttgctgtgc ggtggaggtg
     8701 agggatacca gctttgggtg tgcctctttt ctctccctgg ttgcctctca cccaattttc
     8761 ctgcagtccc cttggtttgt aaattgcctg catttactct gtcagccaac gtgtacaaat
     8821 gtaagaaaga atttttaaac aggtaataaa ttatatttat aagcaa
//
