LOCUS       XM_006256423            5912 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus unc-5 netrin receptor B (Unc5b),
            transcript variant X1, mRNA.
ACCESSION   XM_006256423
VERSION     XM_006256423.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006256423.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006256423.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5912
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5912
                     /gene="Unc5b"
                     /gene_synonym="Unc5h2"
                     /note="unc-5 netrin receptor B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 34
                     ESTs, 8 long SRA reads, 9 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 142 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:60630"
                     /db_xref="RGD:621756"
     CDS             434..3241
                     /gene="Unc5b"
                     /gene_synonym="Unc5h2"
                     /codon_start=1
                     /product="netrin receptor UNC5B isoform X1"
                     /protein_id="XP_006256485.1"
                     /db_xref="GeneID:60630"
                     /db_xref="RGD:621756"
                     /translation="MRARSGARGALLLLALLLCWDPTPSLAGIDSGGQALPDSFPSAP
                     AEQLPHFLLEPEDAYIVKNKPVELHCRAFPATQIYFKCNGEWVSQKGHVTQESLDEAT
                     GLRIREVQIEVSRQQVEELFGLEDYWCQCVAWSSSGTTKSRRAYIRIAYLRKNFDQEP
                     LAKEVPLDHEVLLQCRPPEGVPVAEVEWLKNEDVIDPAQDTNFLLTIDHNLIIRQARL
                     SDTANYTCVAKNIVAKRRSTTATVIVYVNGGWSSWAEWSPCSNRCGRGWQKRTRTCTN
                     PAPLNGGAFCEGQAFQKTACTTVCPVDGAWTEWSKWSACSTECAHWRSRECMAPPPQN
                     GGRDCSGTLLDSKNCTDGLCVLTLEPSGDVALYAGLVVAVFVVLAVLMAVGVIVYRRN
                     CRDFDTDITDSSAALTGGFHPVNFKTARPSNPQLLHPSAPPDLTASAGIYRGPVYALQ
                     DSADKIPMTNSPLLDPLPSLKIKVYDSSTIGSGAGLADGADLLGVLPPGTYPGDFSRD
                     THFLHLRSASLGSQHLLGLPRDPSSSVSGTFGCLGGRLTIPGTGVSLLVPNGAIPQGK
                     FYDLYLRINKTESTLPLSEGSQTVLSPSVTCGPTGLLLCRPVVLTVPHCAEVIAGDWI
                     FQLKTQAHQGHWEEVVTLDEETLNTPCYCQLEAKSCHILLDQLGTYVFTGESYSRSAV
                     KRLQLAIFAPALCTSLEYSLRVYCLEDTPAALKEVLELERTLGGYLVEEPKPLLFKDS
                     YHNLRLSLHDIPHAHWRSKLLAKYQEIPFYHVWNGSQKALHCTFTLERHSLASTEFTC
                     KVCVRQVEGEGQIFQLHTTLAETPAGSLDALCSAPGNAATTQLGPYAFKIPLSIRQKI
                     CNSLDAPNSRGNDWRLLAQKLSMDRYLNYFATKASPTGVILDLWEARQQDDGDLNSLA
                     SALEEMGKSEMLVAMTTDGDC"
ORIGIN      
        1 cgcgcggcgg cgctgggcat tgtggccagc agcggggcgg gcgaaggtgc cgagccgcgg
       61 ggagcggcag ggcgcggagg ggagcgcaca ccccacttgg acagactttg cggcgcggcc
      121 gctgcgagcg ccactgagcg cactccactg ggatcgcgca acttcggagc agggcgcgga
      181 cggcggtcgc cgccggagag cgcggaaagg gcgcaccaga gccgggttcc ccagcggcgt
      241 ccactcccgg agcgctccga gcctccgggc agtctcccgg cgctgcgtgg ttgccgctgc
      301 gcccacggag ggcacgggct ggcgctgccg ggcgcctgcg aggacggcga ggcggcggcg
      361 aaggcgaagg cggcgaggct ggggaccggg aaagaacccc gagggagagg cgcccgggcc
      421 gggcgacagg agcatgaggg cccggagcgg ggcgcggggc gcgctgctgc tgctggcgct
      481 gctgctctgc tgggatccga caccgagctt agcaggcatt gactctggtg gccaggcact
      541 cccagactcc ttcccatcag cacccgcgga gcagctgcct cacttcctgc tggaaccaga
      601 ggatgcctac atcgtaaaga acaagccagt ggaattgcac tgccgagcct tccctgccac
      661 acagatctac ttcaagtgta atggcgagtg ggttagccag aaaggccacg tcacgcagga
      721 gagcctggat gaggccacag gcttgcgaat acgagaggtg cagatagagg tgtcgcggca
      781 gcaggtggag gaactctttg ggctcgagga ctactggtgt cagtgcgtgg cctggagctc
      841 ttcgggaacc accaagagtc gccgagccta catccgcatt gcctacttgc gcaagaactt
      901 tgaccaggag cctctggcga aggaggtacc cttggatcat gaggtccttc tgcagtgccg
      961 cccaccagag ggagtgcctg tggctgaggt ggaatggctc aagaatgaag atgtcatcga
     1021 tcccgctcag gacactaact tcctgctcac cattgaccac aacctcatca tccgccaggc
     1081 gcgcctctca gacacagcca actacacctg tgtggccaag aatattgtgg ccaagcgccg
     1141 gagcacgacg gccacagtca tcgtctatgt gaacggaggt tggtccagct gggcagaatg
     1201 gtcaccctgc tctaaccgct gcggccgagg ttggcagaaa cgtactagga cctgcaccaa
     1261 cccagcccca ctcaatggag gtgccttctg cgagggacag gctttccaga agacggcttg
     1321 caccaccgtg tgcccagtgg atggagcgtg gactgagtgg agcaagtggt ccgcctgcag
     1381 cacagagtgt gcgcactggc gcagccgcga gtgcatggca ccgccgcccc agaacggagg
     1441 ccgcgactgc agcgggacgc tacttgactc caagaactgc accgatgggc tgtgcgtgct
     1501 gaccctggag ccgtcgggag acgtggcgct gtatgcgggc ctcgtggtgg ccgtctttgt
     1561 ggttctggca gttctcatgg ctgtaggagt gatcgtgtac cggagaaact gccgggactt
     1621 cgacacggac atcactgact cctctgctgc cctcactggt ggtttccacc ccgtcaactt
     1681 caagactgca aggcccagca acccacagct cctgcaccca tccgcccctc cggacctaac
     1741 ggccagtgct ggcatctacc gcggacctgt gtatgccctg caggactccg ccgacaagat
     1801 ccctatgact aattcacccc tgctggatcc cttgcccagc ctcaagatca aggtctatga
     1861 ctccagcacc atcggctctg gggctggcct ggctgatgga gccgacctgc tgggtgtctt
     1921 accacccggt acatacccag gcgatttctc ccgggacacc cacttcctgc acctgcgcag
     1981 cgccagcctc ggttcccagc acctcctggg cctccctcga gaccccagca gcagtgtcag
     2041 tggcaccttt ggttgcctgg gtgggaggct gaccattccc ggcacagggg tcagcctgtt
     2101 ggtaccaaat ggagccattc cccagggcaa gttctatgac ttgtatctac gtatcaacaa
     2161 gactgaaagc accctcccac tttcagaagg ttcccagaca gtattgagcc cctcggtgac
     2221 ctgcgggccc acgggcctcc tcctgtgccg ccctgttgtc ctcactgtgc cccactgtgc
     2281 tgaagtcatt gccggagact ggatcttcca gctcaagacc caggcccatc agggccactg
     2341 ggaggaggtg gtgactttgg atgaggagac tctgaacacc ccctgctact gccagctaga
     2401 ggctaaatcc tgccacatcc tgttggacca gctgggtacc tacgtgttca cgggcgagtc
     2461 ctactcccgc tccgcagtca agcggctcca gctagccatc ttcgccccag ccctctgcac
     2521 ctccctggag tatagtctca gggtctactg tctggaggac actcctgcag cactgaagga
     2581 ggtcctagaa ctggagagga ctctgggtgg ctacttggtg gaggagccca agcctttgct
     2641 ctttaaggac agttaccaca acctacgcct ctccctccat gacatccccc atgcccactg
     2701 gaggagcaaa ctactggcca agtaccagga gattcccttc taccatgtgt ggaacggcag
     2761 ccagaaagcc ctgcactgca ctttcaccct ggagagacat agcctagcct ccactgagtt
     2821 cacctgtaag gtctgcgtgc ggcaggtaga aggggaaggc cagattttcc agctgcacac
     2881 cacgctggct gagacgcctg ctggctccct ggatgcactc tgctctgccc ctggcaatgc
     2941 tgccaccaca cagctgggac cctatgcctt caagatacca ctgtccatcc gccagaagat
     3001 ctgcaacagc ctggacgccc ccaactcacg gggcaatgac tggcggctgt tggcacagaa
     3061 gctctccatg gaccggtacc tgaactactt cgccaccaaa gctagtccca caggcgtgat
     3121 cttagacctc tgggaagctc ggcagcagga tgatggggac ctcaacagcc tggccagtgc
     3181 cttggaggag atgggcaaga gtgagatgct ggtagccatg accactgatg gcgattgctg
     3241 agtgcctgtg acctcaggcc tgtgggggcc agtaggagat ggtgcaagga ggcctggcaa
     3301 cctctctgtg ggggtgtcca acctccacca tccctggctc acagctggaa tggtccctca
     3361 cgcccctccc caccacaacc ctcagaccac caccagcctt agaaagactc tgtgctctac
     3421 tgccaggagg cggggatcct cggcctcacc gtttccccag ctcactctgg ggtgggctga
     3481 gtcctcgggg gcagctgaag gccagaggct ttccccccac aacacaccac cctcagccct
     3541 gtgactttgg aggcccacgg gtttcagttc tgtgttcaca tggtcctcgg ctaaggactg
     3601 ctctcctatc ccgggtcctc tctgaaaggt caagttcagt tcaagcaaac tgctcgcttt
     3661 ctcctgccca caaacttaga gagagagaga gagagagaga gagagagaga gagagagaga
     3721 gagagagaga gagaatatga gcctcagaag tcagcgagac tcgggcaatg atagtgcaaa
     3781 aactataagg gcaaagaaac ccagtttctt agggaacgaa aatgatttat catccagata
     3841 cctggatagg tcctttttaa gaaaacaaac aaacaaacaa aaaagtaagg aaagaaaaaa
     3901 aaacttttat ccttgaatgt ggttaagagt ggctgtgctt gtggtttggg ccataggcaa
     3961 gtgcattctc gggcacacgt gtgcatgggt gtggtcagca agagactgca caggggaata
     4021 ctttgctgtg gcaagacctc agtgtcccta gctgtgcagg gagctgagac agggttttag
     4081 ccatgacacc aagtgctaaa ctcttgagca gaggctggcc tggtggtcct cccactctct
     4141 gtgctcttct gtggcctcct ctagttttgg ggaacccaaa tggaggccca ggccagctgt
     4201 gatgggggag actgttcagg tctgttttac tttggtgatt cctggtctag tgatggccaa
     4261 gggtgtggct cttactgaga gggaggggct attccaggga tggttccctc ccaggttgga
     4321 tggctttgtg tctaggctgg tactagccag tccgcaccct gtttacccac tcatcttcct
     4381 tcttggagtc aggagctgtg aaggtaactt ttccacccac ctttggccac agcccattct
     4441 gggatgttcc acagggccac agtagaaggg atgaattctt gtcccttcag cccacgggca
     4501 gtgatggaga ccaggacctc actgtagaca tagagatcct atcgaaggat acttactgta
     4561 gaatcaagac ttgctgtaaa acttccctga actcccattg agaccaccct ggcaggtcct
     4621 gagctttgaa agttggggcc tctgtgggga ggcaggtttc atggccacag acccagcgag
     4681 cgtctgtgcc ctgggtttcc gcagtggctc ctgaagtggg actctaagac tgagaccgag
     4741 gtgctcctgg catctaggtg aatggtgcct catagagtgt cctcagctcc tcctgccaaa
     4801 gatgctcatc cccgtgggca tactcttgct ggtcactgtt agcccgcaca tagaaatggg
     4861 aagcccggga accaagttgt agctatgctg tgtgacttca ggcacataac cgctttctct
     4921 gggcttaagt gtccttttat cctgggatgc tccacgaggc cccttaggtt cccacactcc
     4981 tctgggactc tagtagagac aagttgattg tggtctgcat ttgcccatcc tcagaaacct
     5041 gcctgtctgg gccctggtgg gagcacgtag ggagcgagtc ccagtttacg gtctgactct
     5101 tgggaggtgc tcagcatctg gagcacaaag gctggagctg gagcctgggg cagggctcca
     5161 acctcatagt ttggtagcag ccgcccgggg aatgtcggcc aactctgggc agagccaggc
     5221 agggctattg ggttgggttt ccactcctgc ctccaatgag atggcacctc cccttcccat
     5281 tcctggccag cttggtgttg ccgggtcctg cagggtattt ctgtgtcatc gtgtgtgtgt
     5341 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgcgcgc gcacgcgcgc gcgtgcgtgc
     5401 ttgcctgtgt ttttcaactt gggcacatca gggcacccct cctagaacgc acacacttgt
     5461 ccccacacgt ggacatgacc tctgtgccca ggctcgtgcc actgaggagg acatgcctgt
     5521 ttgctgtccc aagtcagtca gtccgtgtat ctcctaatgt gcctctcctg cccttcctca
     5581 gggggctcca ggcttctgcg ctctggctag acacctcctg agggacagag accctcctca
     5641 tccctggatc tgccagggct ctctggtccc catcttgagg ctcccaggca tctgagtcag
     5701 caccttcctc ccgccctcag aggtcgggtg tgtgggagct tggatgtcag gctgtgaaca
     5761 tggctgtgtg tctgtgggtt ctgatccact ggggatagtc ccagccccac ccgttcattc
     5821 tgtaaacaac ttgtaaataa cctttagcat tcctcttgta acaaaattaa tttttatgaa
     5881 ataaattata tttcctagtc tataaaaaaa aa
//
