LOCUS       NM_138919               1176 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus unc-50 inner nuclear membrane RNA binding protein
            (Unc50), mRNA.
ACCESSION   NM_138919
VERSION     NM_138919.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1176)
  AUTHORS   de Chaldee,M., Brochier,C., Van de Vel,A., Caudy,N.,
            Luthi-Carter,R., Gaillard,M.C. and Elalouf,J.M.
  TITLE     Capucin: a novel striatal marker down-regulated in rodent models of
            Huntington disease
  JOURNAL   Genomics 87 (2), 200-207 (2006)
   PUBMED   16359841
REFERENCE   2  (bases 1 to 1176)
  AUTHORS   Kwitek,A.E., Gullings-Handley,J., Yu,J., Carlos,D.C., Orlebeke,K.,
            Nie,J., Eckert,J., Lemke,A., Andrae,J.W., Bromberg,S., Pasko,D.,
            Chen,D., Scheetz,T.E., Casavant,T.L., Soares,M.B., Sheffield,V.C.,
            Tonellato,P.J. and Jacob,H.J.
  TITLE     High-density rat radiation hybrid maps containing over 24,000
            SSLPs, genes, and ESTs provide a direct link to the rat genome
            sequence
  JOURNAL   Genome Res 14 (4), 750-757 (2004)
   PUBMED   15060019
REFERENCE   3  (bases 1 to 1176)
  AUTHORS   Fitzgerald,J., Kennedy,D., Viseshakul,N., Cohen,B.N., Mattick,J.,
            Bateman,J.F. and Forsayeth,J.R.
  TITLE     UNCL, the mammalian homologue of UNC-50, is an inner nuclear
            membrane RNA-binding protein
  JOURNAL   Brain Res 877 (1), 110-123 (2000)
   PUBMED   10980252
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Nov 27, 2020 this sequence version replaced NM_138919.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY017209.1, BC061976.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-223               JAXUCZ010000009.1  47160818-47161040
            224-507             JAXUCZ010000009.1  47161845-47162128
            508-628             JAXUCZ010000009.1  47163203-47163323
            629-768             JAXUCZ010000009.1  47167054-47167193
            769-870             JAXUCZ010000009.1  47167269-47167370
            871-1176            JAXUCZ010000009.1  47168387-47168692
FEATURES             Location/Qualifiers
     source          1..1176
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q21"
     gene            1..1176
                     /gene="Unc50"
                     /gene_synonym="Uncl"
                     /note="unc-50 inner nuclear membrane RNA binding protein"
                     /db_xref="GeneID:192356"
                     /db_xref="RGD:621749"
     exon            1..223
                     /gene="Unc50"
                     /gene_synonym="Uncl"
                     /inference="alignment:Splign:2.1.0"
     exon            224..507
                     /gene="Unc50"
                     /gene_synonym="Uncl"
                     /inference="alignment:Splign:2.1.0"
     CDS             228..1007
                     /gene="Unc50"
                     /gene_synonym="Uncl"
                     /note="uncoordinated-like protein; unc-50 related protein
                     (UNCL); unc-50 homolog"
                     /codon_start=1
                     /product="protein unc-50 homolog"
                     /protein_id="NP_620274.1"
                     /db_xref="GeneID:192356"
                     /db_xref="RGD:621749"
                     /translation="MLPSTSLNSSMYGNGALNSRDAARHTAGAKRYKYLRRLFRFRQM
                     DFEFAAWQMLYLFTSPQRVYRNFHYRKQTKDQWARDDPAFLVLLSIWLCVSTIGFGFV
                     LDMGFFETIKLLLWVVFIDCVGVGLLISTLMWFISNKYLVKRQSRDYDVEWGYAFDVH
                     LNAFYPLLVILHFIQLFFINHVILTDTFIGYLVGNTLWLIAVGYYIYVTFLGYSALPF
                     LKNTVVLLYPFAPLIVLYGLSLALGWNFTHTLCSFYKYRVK"
     exon            508..628
                     /gene="Unc50"
                     /gene_synonym="Uncl"
                     /inference="alignment:Splign:2.1.0"
     exon            629..768
                     /gene="Unc50"
                     /gene_synonym="Uncl"
                     /inference="alignment:Splign:2.1.0"
     exon            769..870
                     /gene="Unc50"
                     /gene_synonym="Uncl"
                     /inference="alignment:Splign:2.1.0"
     exon            871..1176
                     /gene="Unc50"
                     /gene_synonym="Uncl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cccagcggcg actgggctcc gtacccggct aaggtggcgg tagtcttggt cccaaggcga
       61 ggcctcgtgg gccttcaggt gcggcctgct ctgtgtgcgc ggggtggcgt tcgtgccgac
      121 ggccgtttcc acggtcagtt cgcaacctgg catctgagcg gctgggggta ggaccaacca
      181 gcgccccgca gctcaagtcc taggcccgcc gtgaagctgc tgggaagatg ctaccaagta
      241 cttctttgaa ttcttcgatg tacgggaatg gagctttaaa ttccagggat gcagcaagac
      301 acacagctgg agcaaaacgc tacaagtacc tcagaaggct ttttcgcttt cggcagatgg
      361 actttgagtt tgcggcatgg cagatgctct acctgttcac ctcccctcag agggtttata
      421 gaaactttca ctaccggaag caaacgaagg atcagtgggc cagagatgac cctgccttct
      481 tggtcctcct aagtatctgg ctctgtgtgt ccaccatagg atttggcttt gtgctggaca
      541 tgggattttt tgagacaata aagctgctcc tgtgggttgt gttcatagat tgtgtaggtg
      601 ttggccttct catatcaact ttaatgtggt tcatctccaa caagtacctg gtgaaacgcc
      661 agagcagaga ttacgatgtg gagtggggct acgccttcga cgtgcacctg aatgctttct
      721 atccgctcct cgtcatcctg catttcatcc agctcttctt catcaaccat gttattctca
      781 cagacacgtt tattggatat ttagttggaa ataccttatg gttgatcgcg gttggctatt
      841 atatctatgt gaccttcctg ggatacagtg cattgccatt tttgaaaaat acagtggtcc
      901 tgctctatcc atttgcacct ctcattgtgc tgtacggact atcactggcg ctgggatgga
      961 actttaccca cacgctgtgt tccttctaca agtacagagt gaagtgacag tgcccttagc
     1021 tgtcctgtct ggtgttggga agggatgagt tcttgtaaat ctgtaaatag cttcaagatg
     1081 taaagtttta caaattcgag gtgatattaa cacttgtcta gaccattcct taaaacgaat
     1141 taaatgtaca tttctaataa atatttttaa agtaaa
//
