LOCUS       XM_039082736            3929 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus unc-51 like kinase 4 (Ulk4),
            transcript variant X7, mRNA.
ACCESSION   XM_039082736
VERSION     XM_039082736.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082736.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3929
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3929
                     /gene="Ulk4"
                     /note="unc-51 like kinase 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 12 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:363167"
                     /db_xref="RGD:1565726"
     CDS             202..2595
                     /gene="Ulk4"
                     /codon_start=1
                     /product="serine/threonine-protein kinase ULK4 isoform X6"
                     /protein_id="XP_038938664.1"
                     /db_xref="GeneID:363167"
                     /db_xref="RGD:1565726"
                     /translation="MENFVLYEEIGRGSRTVVYKGRRKGTINFVAILCTEKCKRPEIT
                     NWVRLTHEIKHKNIVTFHEWYETSNHLWLVVELCTGGSLETVIAQDQNLPEDVVREFG
                     VDLVTGLHHLHRLGILFCDLSPGKILLEGPGTLKFSNFCLAKVEGESLEEFFALVAAE
                     EGGGDSGENTLRKSMKTRVRGSLIYAAPEIVTGTEFSVTSDLWSLGCLLYEMFSGRPP
                     FFSETMSELVEKILYEDPLPPIPKDSSFPKASSDFINLLDGLLQKDPQKRLSWEGVLQ
                     HPFWKDALRREDSDSVSEDSTFSSRNVMECSGPHDSRELLQSPKNGQAKGQKGAHRLS
                     QSFRLENPTELRPKSIMGGQLNESIFLLSSRPTPRTSAMVELNPGEGEDPSSPQKTSP
                     LSKMTSGHLSQGALESQMRELIYTDSDLVITPIIDNPKIMKQPAIKFDPKILHLPAYS
                     VEKLLALKDQDWSDFLQQLCSHVDSSEKSTGALRAKLNLLCYLCVVATHKEVATRLLH
                     SPLFQLLIQHLRIAPNWDIRSKVARVVGMLALHTAELQESVPVIEAITLLTELIRENF
                     RSGKLKQCLLPTLGQLLYLVATQEEKTQHSRECWSVPLAAYTVLMRCLREGEERVVNH
                     MAAKIIENVCTTFSAQAQGFTTGEIGPVLWHLFRHSTVDALRITAISALCRITRQSPT
                     AFQNVIEKVGLNAVISSLASAICKVQQYMLTLFTAMLSCGIHLQRLIQEKDFVSTVIR
                     LLDSPSTPIRAKAFLVLLYVLIHNRDMLLLSCQAREKQRLPQCRQWTRWTQHGGSWN"
ORIGIN      
        1 cgcgtctcgc aggttgttat ggtgacgcag agggctcacc cacgcgtcca ggggagttgg
       61 ccaggtcttc gggtgcctcg gtttcctctg tccaggctgc ggcctcaccg tggcaaggca
      121 gagcgcgtgc aactcgggtc ccccaccatc gtgcaggagc tggacatgct gttttaccgt
      181 atatgagcag ttgaggcaga catggaaaac ttcgtcttgt atgaggagat tggcagagga
      241 agcaggaccg tcgtatataa ggggcgtagg aaagggacca tcaactttgt ggccatcctt
      301 tgtaccgaga agtgcaaacg gcctgaaata accaactggg tccgactcac ccacgagata
      361 aaacacaaga acatcgtaac ttttcacgag tggtacgaga ccagcaatca tctctggttg
      421 gtggtggagc tttgcacagg tggttctcta gaaacagtga ttgctcagga ccagaacctc
      481 ccggaagatg tcgtgagaga gtttggggtg gacctggtca cagggctgca ccatctccac
      541 aggcttggca ttctcttttg tgacctttct cctgggaaga tactcttgga agggcccgga
      601 acactgaagt tcagcaattt ctgcctggca aaggtggaag gggaaagcct ggaggagttc
      661 ttcgctttgg tggcagcaga agaaggaggt ggtgacagtg gggagaacac actgaggaag
      721 agcatgaaga cccgagtccg aggctctctg atatatgcgg ctccggaaat cgtgacgggg
      781 actgaattct ctgttaccag tgacctctgg tccttgggct gtctacttta tgaaatgttt
      841 tcagggagac ccccgttctt ctcagaaacg atgtcagaat tagttgagaa gattctgtat
      901 gaagacccgt tgccaccgat cccaaaagac tcttcattcc ccaaagcatc ctcagatttc
      961 attaacttgc tggatggatt gctgcagaag gatcctcaga aaagattatc ctgggaggga
     1021 gttctgcagc accccttctg gaaggatgcc ctgcggagag aagactcaga ctcggtctcc
     1081 gaggactcca ccttcagcag cagaaatgtc atggaatgtt ctggaccaca tgattccaga
     1141 gagcttttgc agagccctaa gaatggacaa gccaaagggc agaagggagc tcatcggctc
     1201 agccagtctt tcaggctaga aaacccgact gagctgaggc ccaagagtat catgggaggc
     1261 cagctgaatg agtccatatt tctcctcagt tcacggccca ctccaaggac tagtgccatg
     1321 gtggaattaa atcctggaga gggtgaggac cccagctcac ctcagaagac ctctccttta
     1381 tccaagatga caagcgggca cctgagccag ggggcattgg aatcccagat gagagagctg
     1441 atctacacag actcagacct tgtgatcacc ccaattatag acaatccgaa gataatgaag
     1501 caacctgcaa tcaagtttga cccaaaaatc ttgcacctcc cagcatattc tgtggagaag
     1561 ctgctggccc tcaaggacca ggactggagt gacttcctgc agcagctgtg ctcccacgtc
     1621 gactccagtg agaagagcac aggggccctg cgggccaagc tgaacctcct gtgctatctg
     1681 tgtgtggtgg ccactcacaa ggaggtggcc accaggctgc ttcactcccc gctgttccag
     1741 ttgctaatcc agcatctgcg aatagctcca aactgggata tacggtccaa ggttgctcgg
     1801 gtggtcggca tgctggcctt gcacacagca gaacttcagg aaagcgtgcc tgttattgag
     1861 gcgatcacac tcttaactga attaatccgg gagaacttca ggagtggcaa gctgaagcaa
     1921 tgcctcctgc ccaccctcgg acagcttctc taccttgtag ctacccagga agaaaaaacc
     1981 cagcactcca gggaatgttg gtctgtcccc ctggctgcat acactgtgct tatgaggtgc
     2041 ctccgggaag gggaggaacg ggttgtcaat cacatggctg cgaagattat tgagaatgtt
     2101 tgcacaacat tttctgccca ggcgcagggc ttcacaactg gggagattgg gcctgtcctg
     2161 tggcacctct tcagacactc cactgtggat gcccttcgga taaccgcgat ctcggccctg
     2221 tgcagaatca cacggcagtc tcccactgcc ttccagaatg tcatcgagaa ggtgggtctc
     2281 aatgctgtca tcagctccct ggcctcagcc atctgcaaag tgcagcagta tatgctgacc
     2341 ctgttcacag ccatgctgtc ttgtgggatt catctccagc ggctgatcca agagaaggac
     2401 tttgtctcta ccgtcatccg cttacttgac agtccgtcca ctcccatcag agccaaagcc
     2461 ttcctggtgc tgctgtacgt cctcattcat aaccgggaca tgctgctgct cagctgccaa
     2521 gccagggaga agcaaaggct accacagtgt agacagtgga cacggtggac tcagcatgga
     2581 gggagctgga actgagggaa ccgctgtggc ttgtgtggag gtgatgtcat gctgcagcag
     2641 cacactgact gtgaggtttg caggggaccc gggtagcagc agtcaactgc tggtcacagc
     2701 caaggggaca aggggaagct gagacaatgg cagagtgtga cctctccctc cttcccctgg
     2761 aacagttaca gagagtaact tgtgcaggga aggagggttg gatcagctca tggttgagac
     2821 tgtactatcc accatggcag gatgcatagc aggagtgtgg gcctgggctg cctcacatgt
     2881 gcgccactca ggaagcagag agcagggaag gtcagtgcac atctgtgtgg tgcacatctg
     2941 tgtggtgcac atctgtgtgg tgcacatctg tgtggtgcac atctggctcc tctttttcct
     3001 tttccttcag ctcagaaccc cagcctgtga gcctttgcct ctcacattct gggtggtcct
     3061 ctttggtgac accctcacaa acacatccag aggtatgtct cctaggtgat tttctatccc
     3121 gtcaaatgga caatgaagat tatcctggag tgggactgtc ttggaccaac caacaatata
     3181 aataataaca gagacttttt aatattttaa agctgttggg ctctcctggc tgctctaatc
     3241 tgactgagga agttggaggg aagaaggggt ttttaatctt ttgcagttta ctttggatta
     3301 tttctgagtg ctgatctttt aatctggtct atacagaatg ctaagaaata gagtttgtcg
     3361 gattggggtc taaactgttt tgaacgctgc atacaaaggt ctccccattt ccacagtggg
     3421 ttcatgaagt gtgggaggct cccttgtcag tgacctgcga gagcttcctg gtgctggttg
     3481 ttgggcagac tctggtgggg cttgctgggg tgggccacac tggccctcct cagctgtgtt
     3541 ctctctctcc tgctgggttc tcctcagcag acacaggctg ttttcttaca ggctcgctct
     3601 gcagtaggga ttcaaaatgt gagtagactt caacttaagg aaaagatatt tcagacttgg
     3661 gcaattaaga gcacattatt aaattttgtg gtgaataatt tcgattttag agaaaagtta
     3721 aattcttgaa gacatatact tttgtataca ccatggattt gagggacata ttttcccttc
     3781 ttttgcccct cttgcctgct ttctacaact gggtagctat tgatttaggg cagtggttct
     3841 caaccttcct aaatctgtga ccctttaata cagttcctca tgtatggtga ccccaaccat
     3901 aaaattattc ctgatgccac ttcctaact
//
