LOCUS       XM_039082733            4132 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus unc-51 like kinase 4 (Ulk4),
            transcript variant X3, mRNA.
ACCESSION   XM_039082733
VERSION     XM_039082733.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 2, 2024 this sequence was replaced by
            NM_001427712.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4132
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4132
                     /gene="Ulk4"
                     /note="unc-51 like kinase 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 5 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 43 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:363167"
                     /db_xref="RGD:1565726"
     CDS             202..4029
                     /gene="Ulk4"
                     /codon_start=1
                     /product="serine/threonine-protein kinase ULK4 isoform X2"
                     /protein_id="XP_038938661.1"
                     /db_xref="GeneID:363167"
                     /db_xref="RGD:1565726"
                     /translation="MENFVLYEEIGRGSRTVVYKGRRKGTINFVAILCTEKCKRPEIT
                     NWVRLTHEIKHKNIVTFHEWYETSNHLWLVVELCTGGSLETVIAQDQNLPEDVVREFG
                     VDLVTGLHHLHRLGILFCDLSPGKILLEGPGTLKFSNFCLAKVEGESLEEFFALVAAE
                     EGGGDSGENTLRKSMKTRVRGSLIYAAPEIVTGTEFSVTSDLWSLGCLLYEMFSGRPP
                     FFSETMSELVEKILYEDPLPPIPKDSSFPKASSDFINLLDGLLQKDPQKRLSWEGVLQ
                     HPFWKDALRREDSDSVSEDSTFSRNVMECSGPHDSRELLQSPKNGQAKGQKGAHRLSQ
                     SFRLENPTELRPKSIMGGQLNESIFLLSSRPTPRTSAMVELNPGEGEDPSSPQKTSPL
                     SKMTSGHLSQGALESQMRELIYTDSDLVITPIIDNPKIMKQPAIKFDPKILHLPAYSV
                     EKLLALKDQDWSDFLQQLCSHVDSSEKSTGALRAKLNLLCYLCVVATHKEVATRLLHS
                     PLFQLLIQHLRIAPNWDIRSKVARVVGMLALHTAELQESVPVIEAITLLTELIRENFR
                     SGKLKQCLLPTLGQLLYLVATQEEKTQHSRECWSVPLAAYTVLMRCLREGEERVVNHM
                     AAKIIENVCTTFSAQAQGFTTGEIGPVLWHLFRHSTVDALRITAISALCRITRQSPTA
                     FQNVIEKVGLNAVISSLASAICKVQQYMLTLFTAMLSCGIHLQRLIQEKDFVSTVIRL
                     LDSPSTPIRAKAFLVLLYVLIHNRDMLLLSCQARLVMYIERDSRKTSPGKELQSGNEY
                     LARCLDLLIQHMVQESPRILGDILNALANVSGRKHPSTVQGKQLKMCLPMMPVVLHLV
                     MSQVFRPQVVTEEFLFSYGTILSHIKSIDLGETNIDGAIGIVASEEFIKITLSAFEAV
                     IQYPVLLADYRATVVDYILPPLVSLVQSQNVEWRLFSLRLLSETTTLLVSQEPEDGDE
                     EASCDSDSGLLALIRDELLPQYEHILMEPDPVPAYALKLLVAMTEHNPAFTRLVAESK
                     LVPLIFEVILEHQESILGNTMQSVIALLNNLVAYKDSNMQLLYEQGLVGHVCNMFTET
                     ATLCLDRDNKTNTEPAATLLASLLDILLGMLTYTSRIVRQALQAQKSGSRGDTQAAED
                     LLLLSKPLTDLISLLIPLLPSEDPEISEVSSKCLSILVQLYGGENPESLSPENLVTFA
                     DLLMAKEDPKDQKLLLRILKRMVTSNEKLLESLRNTGSLLQALERLAPAHSSPVDTVV
                     ASLALDLLQAVGH"
ORIGIN      
        1 cgcgtctcgc aggttgttat ggtgacgcag agggctcacc cacgcgtcca ggggagttgg
       61 ccaggtcttc gggtgcctcg gtttcctctg tccaggctgc ggcctcaccg tggcaaggca
      121 gagcgcgtgc aactcgggtc ccccaccatc gtgcaggagc tggacatgct gttttaccgt
      181 atatgagcag ttgaggcaga catggaaaac ttcgtcttgt atgaggagat tggcagagga
      241 agcaggaccg tcgtatataa ggggcgtagg aaagggacca tcaactttgt ggccatcctt
      301 tgtaccgaga agtgcaaacg gcctgaaata accaactggg tccgactcac ccacgagata
      361 aaacacaaga acatcgtaac ttttcacgag tggtacgaga ccagcaatca tctctggttg
      421 gtggtggagc tttgcacagg tggttctcta gaaacagtga ttgctcagga ccagaacctc
      481 ccggaagatg tcgtgagaga gtttggggtg gacctggtca cagggctgca ccatctccac
      541 aggcttggca ttctcttttg tgacctttct cctgggaaga tactcttgga agggcccgga
      601 acactgaagt tcagcaattt ctgcctggca aaggtggaag gggaaagcct ggaggagttc
      661 ttcgctttgg tggcagcaga agaaggaggt ggtgacagtg gggagaacac actgaggaag
      721 agcatgaaga cccgagtccg aggctctctg atatatgcgg ctccggaaat cgtgacgggg
      781 actgaattct ctgttaccag tgacctctgg tccttgggct gtctacttta tgaaatgttt
      841 tcagggagac ccccgttctt ctcagaaacg atgtcagaat tagttgagaa gattctgtat
      901 gaagacccgt tgccaccgat cccaaaagac tcttcattcc ccaaagcatc ctcagatttc
      961 attaacttgc tggatggatt gctgcagaag gatcctcaga aaagattatc ctgggaggga
     1021 gttctgcagc accccttctg gaaggatgcc ctgcggagag aagactcaga ctcggtctcc
     1081 gaggactcca ccttcagcag aaatgtcatg gaatgttctg gaccacatga ttccagagag
     1141 cttttgcaga gccctaagaa tggacaagcc aaagggcaga agggagctca tcggctcagc
     1201 cagtctttca ggctagaaaa cccgactgag ctgaggccca agagtatcat gggaggccag
     1261 ctgaatgagt ccatatttct cctcagttca cggcccactc caaggactag tgccatggtg
     1321 gaattaaatc ctggagaggg tgaggacccc agctcacctc agaagacctc tcctttatcc
     1381 aagatgacaa gcgggcacct gagccagggg gcattggaat cccagatgag agagctgatc
     1441 tacacagact cagaccttgt gatcacccca attatagaca atccgaagat aatgaagcaa
     1501 cctgcaatca agtttgaccc aaaaatcttg cacctcccag catattctgt ggagaagctg
     1561 ctggccctca aggaccagga ctggagtgac ttcctgcagc agctgtgctc ccacgtcgac
     1621 tccagtgaga agagcacagg ggccctgcgg gccaagctga acctcctgtg ctatctgtgt
     1681 gtggtggcca ctcacaagga ggtggccacc aggctgcttc actccccgct gttccagttg
     1741 ctaatccagc atctgcgaat agctccaaac tgggatatac ggtccaaggt tgctcgggtg
     1801 gtcggcatgc tggccttgca cacagcagaa cttcaggaaa gcgtgcctgt tattgaggcg
     1861 atcacactct taactgaatt aatccgggag aacttcagga gtggcaagct gaagcaatgc
     1921 ctcctgccca ccctcggaca gcttctctac cttgtagcta cccaggaaga aaaaacccag
     1981 cactccaggg aatgttggtc tgtccccctg gctgcataca ctgtgcttat gaggtgcctc
     2041 cgggaagggg aggaacgggt tgtcaatcac atggctgcga agattattga gaatgtttgc
     2101 acaacatttt ctgcccaggc gcagggcttc acaactgggg agattgggcc tgtcctgtgg
     2161 cacctcttca gacactccac tgtggatgcc cttcggataa ccgcgatctc ggccctgtgc
     2221 agaatcacac ggcagtctcc cactgccttc cagaatgtca tcgagaaggt gggtctcaat
     2281 gctgtcatca gctccctggc ctcagccatc tgcaaagtgc agcagtatat gctgaccctg
     2341 ttcacagcca tgctgtcttg tgggattcat ctccagcggc tgatccaaga gaaggacttt
     2401 gtctctaccg tcatccgctt acttgacagt ccgtccactc ccatcagagc caaagccttc
     2461 ctggtgctgc tgtacgtcct cattcataac cgggacatgc tgctgctcag ctgccaagcc
     2521 aggctggtga tgtacattga gagagacagc agaaagacct ccccaggcaa ggagctgcag
     2581 agcgggaacg aatatctggc caggtgcctg gatctcctca tccagcacat ggtgcaggag
     2641 tcaccacgga tcctcggtga cattctcaac gctttggcaa acgtgtccgg ccggaagcac
     2701 ccatccacgg tccaggggaa gcagctgaag atgtgtctcc ccatgatgcc tgtggtgctc
     2761 cacctggtca tgtctcaggt gtttcgacct caagttgtga cagaagagtt tctcttcagc
     2821 tatggaacta ttcttagtca cattaagtca attgacttgg gggaaacgaa catagatgga
     2881 gccataggca tcgtggcgtc agaggagttc atcaagatca ccctgtcggc atttgaagca
     2941 gtgatccagt acccggttct gctggccgac taccgcgcta cggtcgtgga ttatattctg
     3001 ccgcccttgg tgtccttggt tcaaagccag aatgtggaat ggagactctt cagcttgcgg
     3061 ttgctctcag agaccacaac cctgctggtg agccaggagc cggaggatgg cgacgaagag
     3121 gccagctgtg attctgacag cggtcttctg gcgctcatca gggacgagct gctaccccag
     3181 tacgagcaca tcctcatgga gcccgaccca gttccagcct acgcgctgaa gctgcttgtt
     3241 gccatgacag aacacaaccc tgctttcacc aggcttgtgg cagaaagcaa actggtcccg
     3301 ctcatcttcg aagtaattct ggagcatcag gagagcattc tgggtaatac catgcagagt
     3361 gtgattgctc tactcaacaa cctggtggcc tacaaagact caaacatgca gctgctttat
     3421 gagcaaggac tcgttggtca cgtctgcaac atgttcacag aaactgccac actttgcctg
     3481 gatagggaca ataaaaccaa cacagagcca gcggccacac tgctggcctc actgctggac
     3541 atcctgctgg gcatgctgac ctacacatcc cgaatcgtcc ggcaggcttt gcaggcccag
     3601 aagtcgggct cacgagggga cacacaggct gcagaggacc tgctgcttct cagcaaaccg
     3661 ctcacagacc tcatcagcct gctcatccca ctgcttccca gcgaggaccc cgagatctcc
     3721 gaggtttcat ccaagtgcct gtccatcctg gtgcagctgt atggaggaga gaaccctgag
     3781 agcttgtccc cagagaacct ggtgaccttt gctgacctcc tgatggccaa ggaggacccg
     3841 aaggaccaga agcttctgct gaggatcctc aagaggatgg tgacatccaa tgagaagctc
     3901 ctagaaagcc tcaggaacac cggcagcctt ctgcaggccc tggagcgcct ggctccagct
     3961 cacagctcac ccgtcgacac tgtcgtggct tccttggccc tggatctcct ccaggctgtt
     4021 gggcattaga caaggacgtc ctgtggcccc atccactaca cagcacggtc agatcccact
     4081 cggtcctctc tccccagcct cacgtggagc taataaaatc gataggccag aa
//
