LOCUS       XM_039082732            4280 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus unc-51 like kinase 4 (Ulk4),
            transcript variant X2, mRNA.
ACCESSION   XM_039082732
VERSION     XM_039082732.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082732.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4280
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4280
                     /gene="Ulk4"
                     /note="unc-51 like kinase 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 27 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:363167"
                     /db_xref="RGD:1565726"
     CDS             347..4177
                     /gene="Ulk4"
                     /codon_start=1
                     /product="serine/threonine-protein kinase ULK4 isoform X1"
                     /protein_id="XP_038938660.1"
                     /db_xref="GeneID:363167"
                     /db_xref="RGD:1565726"
                     /translation="MENFVLYEEIGRGSRTVVYKGRRKGTINFVAILCTEKCKRPEIT
                     NWVRLTHEIKHKNIVTFHEWYETSNHLWLVVELCTGGSLETVIAQDQNLPEDVVREFG
                     VDLVTGLHHLHRLGILFCDLSPGKILLEGPGTLKFSNFCLAKVEGESLEEFFALVAAE
                     EGGGDSGENTLRKSMKTRVRGSLIYAAPEIVTGTEFSVTSDLWSLGCLLYEMFSGRPP
                     FFSETMSELVEKILYEDPLPPIPKDSSFPKASSDFINLLDGLLQKDPQKRLSWEGVLQ
                     HPFWKDALRREDSDSVSEDSTFSSRNVMECSGPHDSRELLQSPKNGQAKGQKGAHRLS
                     QSFRLENPTELRPKSIMGGQLNESIFLLSSRPTPRTSAMVELNPGEGEDPSSPQKTSP
                     LSKMTSGHLSQGALESQMRELIYTDSDLVITPIIDNPKIMKQPAIKFDPKILHLPAYS
                     VEKLLALKDQDWSDFLQQLCSHVDSSEKSTGALRAKLNLLCYLCVVATHKEVATRLLH
                     SPLFQLLIQHLRIAPNWDIRSKVARVVGMLALHTAELQESVPVIEAITLLTELIRENF
                     RSGKLKQCLLPTLGQLLYLVATQEEKTQHSRECWSVPLAAYTVLMRCLREGEERVVNH
                     MAAKIIENVCTTFSAQAQGFTTGEIGPVLWHLFRHSTVDALRITAISALCRITRQSPT
                     AFQNVIEKVGLNAVISSLASAICKVQQYMLTLFTAMLSCGIHLQRLIQEKDFVSTVIR
                     LLDSPSTPIRAKAFLVLLYVLIHNRDMLLLSCQARLVMYIERDSRKTSPGKELQSGNE
                     YLARCLDLLIQHMVQESPRILGDILNALANVSGRKHPSTVQGKQLKMCLPMMPVVLHL
                     VMSQVFRPQVVTEEFLFSYGTILSHIKSIDLGETNIDGAIGIVASEEFIKITLSAFEA
                     VIQYPVLLADYRATVVDYILPPLVSLVQSQNVEWRLFSLRLLSETTTLLVSQEPEDGD
                     EEASCDSDSGLLALIRDELLPQYEHILMEPDPVPAYALKLLVAMTEHNPAFTRLVAES
                     KLVPLIFEVILEHQESILGNTMQSVIALLNNLVAYKDSNMQLLYEQGLVGHVCNMFTE
                     TATLCLDRDNKTNTEPAATLLASLLDILLGMLTYTSRIVRQALQAQKSGSRGDTQAAE
                     DLLLLSKPLTDLISLLIPLLPSEDPEISEVSSKCLSILVQLYGGENPESLSPENLVTF
                     ADLLMAKEDPKDQKLLLRILKRMVTSNEKLLESLRNTGSLLQALERLAPAHSSPVDTV
                     VASLALDLLQAVGH"
ORIGIN      
        1 tggccaggtc ttcgggtgcc tcggtttcct ctgtccaggc tgcggcctca ccgtggcaag
       61 gcagagcgcg tgcaactcgg gtcccccacc atcgtgcagg tgggtgggca gctgcggctc
      121 cgtttctggt tacatctccg aacccgcttc attctcatca gaggcgtggc cacttccacc
      181 aggacagcaa cttatctaaa gtcttacttt aaaaaaaatg tttatttatg tgcgtgtgca
      241 catgatgagc gcttgtggaa gccagaagat ggtgttggat tccttggagc tggagttaca
      301 ggagctggac atgctgtttt accgtatatg agcagttgag gcagacatgg aaaacttcgt
      361 cttgtatgag gagattggca gaggaagcag gaccgtcgta tataaggggc gtaggaaagg
      421 gaccatcaac tttgtggcca tcctttgtac cgagaagtgc aaacggcctg aaataaccaa
      481 ctgggtccga ctcacccacg agataaaaca caagaacatc gtaacttttc acgagtggta
      541 cgagaccagc aatcatctct ggttggtggt ggagctttgc acaggtggtt ctctagaaac
      601 agtgattgct caggaccaga acctcccgga agatgtcgtg agagagtttg gggtggacct
      661 ggtcacaggg ctgcaccatc tccacaggct tggcattctc ttttgtgacc tttctcctgg
      721 gaagatactc ttggaagggc ccggaacact gaagttcagc aatttctgcc tggcaaaggt
      781 ggaaggggaa agcctggagg agttcttcgc tttggtggca gcagaagaag gaggtggtga
      841 cagtggggag aacacactga ggaagagcat gaagacccga gtccgaggct ctctgatata
      901 tgcggctccg gaaatcgtga cggggactga attctctgtt accagtgacc tctggtcctt
      961 gggctgtcta ctttatgaaa tgttttcagg gagacccccg ttcttctcag aaacgatgtc
     1021 agaattagtt gagaagattc tgtatgaaga cccgttgcca ccgatcccaa aagactcttc
     1081 attccccaaa gcatcctcag atttcattaa cttgctggat ggattgctgc agaaggatcc
     1141 tcagaaaaga ttatcctggg agggagttct gcagcacccc ttctggaagg atgccctgcg
     1201 gagagaagac tcagactcgg tctccgagga ctccaccttc agcagcagaa atgtcatgga
     1261 atgttctgga ccacatgatt ccagagagct tttgcagagc cctaagaatg gacaagccaa
     1321 agggcagaag ggagctcatc ggctcagcca gtctttcagg ctagaaaacc cgactgagct
     1381 gaggcccaag agtatcatgg gaggccagct gaatgagtcc atatttctcc tcagttcacg
     1441 gcccactcca aggactagtg ccatggtgga attaaatcct ggagagggtg aggaccccag
     1501 ctcacctcag aagacctctc ctttatccaa gatgacaagc gggcacctga gccagggggc
     1561 attggaatcc cagatgagag agctgatcta cacagactca gaccttgtga tcaccccaat
     1621 tatagacaat ccgaagataa tgaagcaacc tgcaatcaag tttgacccaa aaatcttgca
     1681 cctcccagca tattctgtgg agaagctgct ggccctcaag gaccaggact ggagtgactt
     1741 cctgcagcag ctgtgctccc acgtcgactc cagtgagaag agcacagggg ccctgcgggc
     1801 caagctgaac ctcctgtgct atctgtgtgt ggtggccact cacaaggagg tggccaccag
     1861 gctgcttcac tccccgctgt tccagttgct aatccagcat ctgcgaatag ctccaaactg
     1921 ggatatacgg tccaaggttg ctcgggtggt cggcatgctg gccttgcaca cagcagaact
     1981 tcaggaaagc gtgcctgtta ttgaggcgat cacactctta actgaattaa tccgggagaa
     2041 cttcaggagt ggcaagctga agcaatgcct cctgcccacc ctcggacagc ttctctacct
     2101 tgtagctacc caggaagaaa aaacccagca ctccagggaa tgttggtctg tccccctggc
     2161 tgcatacact gtgcttatga ggtgcctccg ggaaggggag gaacgggttg tcaatcacat
     2221 ggctgcgaag attattgaga atgtttgcac aacattttct gcccaggcgc agggcttcac
     2281 aactggggag attgggcctg tcctgtggca cctcttcaga cactccactg tggatgccct
     2341 tcggataacc gcgatctcgg ccctgtgcag aatcacacgg cagtctccca ctgccttcca
     2401 gaatgtcatc gagaaggtgg gtctcaatgc tgtcatcagc tccctggcct cagccatctg
     2461 caaagtgcag cagtatatgc tgaccctgtt cacagccatg ctgtcttgtg ggattcatct
     2521 ccagcggctg atccaagaga aggactttgt ctctaccgtc atccgcttac ttgacagtcc
     2581 gtccactccc atcagagcca aagccttcct ggtgctgctg tacgtcctca ttcataaccg
     2641 ggacatgctg ctgctcagct gccaagccag gctggtgatg tacattgaga gagacagcag
     2701 aaagacctcc ccaggcaagg agctgcagag cgggaacgaa tatctggcca ggtgcctgga
     2761 tctcctcatc cagcacatgg tgcaggagtc accacggatc ctcggtgaca ttctcaacgc
     2821 tttggcaaac gtgtccggcc ggaagcaccc atccacggtc caggggaagc agctgaagat
     2881 gtgtctcccc atgatgcctg tggtgctcca cctggtcatg tctcaggtgt ttcgacctca
     2941 agttgtgaca gaagagtttc tcttcagcta tggaactatt cttagtcaca ttaagtcaat
     3001 tgacttgggg gaaacgaaca tagatggagc cataggcatc gtggcgtcag aggagttcat
     3061 caagatcacc ctgtcggcat ttgaagcagt gatccagtac ccggttctgc tggccgacta
     3121 ccgcgctacg gtcgtggatt atattctgcc gcccttggtg tccttggttc aaagccagaa
     3181 tgtggaatgg agactcttca gcttgcggtt gctctcagag accacaaccc tgctggtgag
     3241 ccaggagccg gaggatggcg acgaagaggc cagctgtgat tctgacagcg gtcttctggc
     3301 gctcatcagg gacgagctgc taccccagta cgagcacatc ctcatggagc ccgacccagt
     3361 tccagcctac gcgctgaagc tgcttgttgc catgacagaa cacaaccctg ctttcaccag
     3421 gcttgtggca gaaagcaaac tggtcccgct catcttcgaa gtaattctgg agcatcagga
     3481 gagcattctg ggtaatacca tgcagagtgt gattgctcta ctcaacaacc tggtggccta
     3541 caaagactca aacatgcagc tgctttatga gcaaggactc gttggtcacg tctgcaacat
     3601 gttcacagaa actgccacac tttgcctgga tagggacaat aaaaccaaca cagagccagc
     3661 ggccacactg ctggcctcac tgctggacat cctgctgggc atgctgacct acacatcccg
     3721 aatcgtccgg caggctttgc aggcccagaa gtcgggctca cgaggggaca cacaggctgc
     3781 agaggacctg ctgcttctca gcaaaccgct cacagacctc atcagcctgc tcatcccact
     3841 gcttcccagc gaggaccccg agatctccga ggtttcatcc aagtgcctgt ccatcctggt
     3901 gcagctgtat ggaggagaga accctgagag cttgtcccca gagaacctgg tgacctttgc
     3961 tgacctcctg atggccaagg aggacccgaa ggaccagaag cttctgctga ggatcctcaa
     4021 gaggatggtg acatccaatg agaagctcct agaaagcctc aggaacaccg gcagccttct
     4081 gcaggccctg gagcgcctgg ctccagctca cagctcaccc gtcgacactg tcgtggcttc
     4141 cttggccctg gatctcctcc aggctgttgg gcattagaca aggacgtcct gtggccccat
     4201 ccactacaca gcacggtcag atcccactcg gtcctctctc cccagcctca cgtggagcta
     4261 ataaaatcga taggccagaa
//
