LOCUS       XM_039098404            6159 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus UL16 binding protein 1 (Ulbp1),
            transcript variant X1, mRNA.
ACCESSION   XM_039098404
VERSION     XM_039098404.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098404.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6159
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6159
                     /gene="Ulbp1"
                     /note="UL16 binding protein 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 16 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:102547056"
                     /db_xref="RGD:7509852"
     CDS             407..1174
                     /gene="Ulbp1"
                     /codon_start=1
                     /product="histocompatibility antigen 60b-like"
                     /protein_id="XP_038954332.1"
                     /db_xref="GeneID:102547056"
                     /db_xref="RGD:7509852"
                     /translation="MRRAAAAAAAKVLSCYLALLCLLSVCLCSGTEDTCYIRFNFTVK
                     DLSLHCYEGQCSVNGKPFLQYKDNKAKPLGNLGMEVNATKAWEDLTETIKGLLEELNK
                     NLHNMKSWPVKTKGNHILEGTLVLQYEQGRLSDSFWTFTIDRQHSFHFYPTNKLWDPP
                     QHKANSIIREFENSIDLEDHLSMFSMGDFNNCHNMFLKLWKDVPRSTITAQDIAQLTS
                     ANTTSTTVNGTSSVPDSQHLKANWSLFLLLILIRFII"
ORIGIN      
        1 cctgtcactt agtgacagtt cccgctcttt tccttttcct gttctcttcc cgcgcttttc
       61 ttcttctggt gactcaggag gtcacatgct agttcgcaca agccatgcgc agctgtgctc
      121 cttcgtgacc ccaccctaca aagcgctgag acttgagata agcactggcc cacatctcag
      181 tctgctgggc acagggacca gcctgcaggg ctgcagctag gctgtgaaaa gatctggaga
      241 gagggaaact agaaaccggt tttgaaggac taaggacgaa ggagggagga gaaggaattg
      301 tcttgaacac atagccaact ttcaaaactt tctgtggtcc gggccatcag caggaagtga
      361 tcaagtcttt ccctcccttg ggcctccagc atctagagga ggagctatga ggcgggctgc
      421 tgctgctgct gctgccaaag tcctttcctg ctacttggcc ctgctgtgcc tgctgtctgt
      481 ctgtctgtgt tcagggacag aagatacatg ctatatccgt ttcaacttca ctgtcaagga
      541 tctttcttta cactgctatg aaggacagtg ttcagtgaac ggaaaacctt tccttcagta
      601 taaagacaac aaggccaagc ctttgggtaa tctgggaatg gaggtcaatg ccaccaaagc
      661 ttgggaagat ttgaccgaaa ccataaaagg ccttttagaa gagctgaata aaaatctaca
      721 taacatgaaa tcatggccag tcaagaccaa gggtaatcat atcctagaag gcaccctggt
      781 actccaatat gaacaaggaa gactcagtga tagcttctgg accttcacca ttgatagaca
      841 acattccttc cacttttatc caacaaacaa gttatgggac ccacctcaac ataaagccaa
      901 cagtatcata agggaatttg agaatagcat tgatcttgaa gaccatctct ctatgttctc
      961 catgggagat ttcaataact gtcacaatat gttcttaaaa ctctggaagg acgtgccaag
     1021 atcaacaata acagcccagg atatagccca gcttacatct gccaacacca cttcaactac
     1081 agtgaatggt acctcttctg tacctgacag tcagcattta aaggcaaact ggagtctgtt
     1141 tctattattg atattaattc gttttatcat ctagttggcc aagagatggt acaaaaatac
     1201 gggtgctccc tgctgctcct cttcctctgc agtctgatct gcatcaccag ctgtcgggtg
     1261 acacttgaac attgccagtg acttcttcag caaaggaagc aaacatattt ctgatggcat
     1321 ctctgaaatc tgacctgttg acttcggacc aaactggtgg gatcccagga gactgatggc
     1381 tgtcagagcc tcatgcatga gggcatcagg gtgcactagg ctgttgccat tggggccttc
     1441 ctcttgctct aatccttttc ctttctcact cttgccttat cattgtggag ataaacctgg
     1501 gtctgcctct aaattacaca tcactttcca aaacagggct tgccctaagt gactccattt
     1561 tacaagctgc aggtggctgt ctcctaagtg ccatgcagac aatggagggc atgaaacttc
     1621 actttataca gagacacatt tcagcccagg gccatcgatg actcagagag tgaaattacc
     1681 ataatctcaa aagtaagaat aagtcacctg tacacttatc aaaatgagtt ggaagcagtg
     1741 agaatcacat gtacatatca aattatatca gagaaccaac tcaaggattt atctcaccct
     1801 cacctagacc ctagaagaag ccacctaact cgcaatagtt atgtcaccac aaacttgccc
     1861 cctggctgtc tgtgtgtcag ggaacctgca ggcagagaac tcctggccat cttaagccct
     1921 catctccgtc cacactgcta atgtctcctc cttgaatcac tgtctgacag ctcatctgct
     1981 gctcatgcta atgtgggtct gcatctcacc tgctggatcc tcagtcctgc acctcacctg
     2041 tgcagttcac tcagtgctga ggcttggtgc agccctgcag ccctgcagct ctccatgagc
     2101 ttccttcgca gctcctctaa cctcctgcat tcaatctgtc tgtgtgtctg taatccctct
     2161 gtctctggct ccagtctgag ctctttaaac tccaatggca actcgttcac tcttctgcag
     2221 ccattctgtg atctaaggcc atgagataac tctgttgtgt tcaatgtgtg atctgagagt
     2281 ttgtattagt aattacgact ggagacagag agcccaggat ggccaggagc cagttgtcaa
     2341 aggtaatcag gactacttgt taattacagg ctgtgaattg gatggaggtt gtaagttaag
     2401 gcatatagat tttcctggca tagctcactg atttgggatt tcatacttca tagtaaaata
     2461 acccagtgag taaatagtcc attagcaaag aaattagaaa tacattgttt ttcaaatgaa
     2521 tgcagtacct gattatagaa aattcagctt ccctaccaaa ccctggtcaa cagagactaa
     2581 acttgctcca ttgacccaat gcctgcctca cagcccagtg aaacttcaca ctcttcagtg
     2641 tgacatctga atcaccatat ttgttaggaa ggggagaggc ttacatctgt ctcccaagag
     2701 gagtgcgtta gcaaaataaa taacgaagca gaaatagaag tgagcaaacc tcagctcacg
     2761 catctatgat tattaatgta tacgacgaat atagaagtat accatactac gaattcatac
     2821 tgttcgaaag aaaactaaga gaaatatgag tgttggtgag aaagatgagt aacagactac
     2881 gtaatagaca aatcctcaga cggtgctgcc tctgatgcag catcatcgat ctacagagcc
     2941 cgaataaaca tgtgacagta acagtcctag accaattgtc actatcttga cagtagcata
     3001 tgggagcata gcaaaggcat agatatgtta cattcagcaa ctgaaaatta tacatacgtt
     3061 tcagtgagga atgagggaca aagagacaac tcagtcatac agcgctcatg ctttttgaga
     3121 atctgagttc cctccccaga atacgtgaac actgtcgtga tacatgcttg caatctcagc
     3181 atagaggaca gagggaaaga gagagagaaa gtgggacaga gggggtaggg ggtcgattat
     3241 tgcatctctg gggcttcgtc atcagaagga atagttaaat gggtgagttt ggtgagttcc
     3301 agtacacact gcctcaagac accgtgggca tggcgtcctg agtagtgaca gcaaaaggta
     3361 atgtgtagta cccacatgta ctagtatatg aacaaacata cacacaggaa aagatacaca
     3421 ctatggacca aaacacagct gatgacttcc tgagatgcat tacttgggag atggaatggg
     3481 gctttttaaa actagtcacg agatgttacc tgttcttggt ttctgggcca tttcatattt
     3541 gtattataat agataaaagg ggccctgctt gtgtcttctt agatgacaag ggtcgtgaca
     3601 ccattgttca accactgtcc caaggtgccg gaggtggtag gattcaccct ctaatcatag
     3661 gaggtatcat gagaaactta gactccaagc actagaccct gattattaaa agaggatatt
     3721 ttgattttat ttttgacaga ggaactcttt gaatctgcat tgctgccctg aaagatgagc
     3781 agattatatt gtggacaaat gatgcagacc actttctctt ggaagggctt tattgctgag
     3841 gataggacat taagagccct gtgtgggaat gctgagctct tatcggctcc taagactata
     3901 caacttatga catcaaccaa caatttggag agggaaagga cctttgtggc ctgagttgaa
     3961 ggtcagactg taacatcact cagaggtcaa gtggtcctcg gtgcttactg taggtgttgg
     4021 tgtagatggc agtgatggac agccctgcca cagcactaac tccatcacag tgacttctaa
     4081 tctagaccat agacatcata ctggagggtt aagtgagacc agccaaagtc accaaagagt
     4141 taaaaccaga aataggctgt gagcaggaat aagtaattgt agcccacagt gtttaaaggg
     4201 ggaactaccc ttttgtggtt tcagcatagg caggaggtat gaccattgtg actgaggagg
     4261 agaaatccta gaaatgcaga aataaggggt tcataacttg acataaagac ctcagattat
     4321 tgttggaaaa tagagtcagg gggtgtttta tgtatgttgt accaaacttt cactgaaata
     4381 atgaacacga gtctccacga tgctcccagg aactagctgg ttgagccttt gcaggttgag
     4441 tcctattaac tcttcagatg aaccctcagt gacaggcctt gtaacaacta cagttggaga
     4501 gacgagcagg acctgttagg actgtttcag acatcaccca tggcttcctt tgtgacctgt
     4561 ggaacaaatt taagataaac ttaatgcact ggtttaatga ctggagatta tcctaaaatc
     4621 gtggagtcag agtttgagct gtgcttatcc tattgttccg tggcagtctt gagtagctgt
     4681 ccagtcatat acaaaaacac aagagtctct tcccttaggg agagctgagt gtggagaaaa
     4741 atcttctgta cagacatcat gggtgttgac agacatagag atgggaataa tttacaatta
     4801 aatgacgact agttgctgca aaagggttga tacagagttt ggaataattc aagatcatag
     4861 atgagaatta attagaacgt gagggagttg gaacttcagt tctcccagtt gaaccaggta
     4921 ctcttgagaa tcctggttgt agctggtaga tttataattt tatattattc ctgtctgtac
     4981 tctgctggga ttttaagacc atgtagatgc caacagcttt cttttgttgc tggcagtttc
     5041 tctttgaagg ttattttcag gggtgttgga gacatttagg ggccctttct ctttagtttc
     5101 ttatattcat cattttctgg acaaggatat ttctaagtga atctgggact ctggggtctc
     5161 catatcctct ctgaagctgt catattgttt tagagctacc ccactgtcct cgatgctagg
     5221 acatggccaa cctggaggtg aaggtgaaaa atctttgccc tcagcccagc cctttcattc
     5281 tcattgcttt agccctctag tggtagccat tgcaatctca gaaagacagt tacaccagac
     5341 ttgcagaaca aatagtggtt ttaatctgtt tcatagcttc atgtgtgacc agttcacagc
     5401 caaggataca tatgaatatc accaaattaa attcagggat ttccttaaaa catcaggagg
     5461 gagttttgca aatatatttt aggaacttga ttgtgtggtc ctcaagcatg aattagaaga
     5521 tcactttgta tcataacatc aaaaggttag atacttcaga tgaatacata tcgtaaaaac
     5581 acatattaaa tcaatcttaa ctctgagaag actccattgt taggaagtta aagttgtgac
     5641 ccactcagtt atcttagtaa accaaacatg taatgaaaaa gctgttttag aaacccatac
     5701 cactttacat tgagtgtcct aagccttgtg acatacaaaa acgtctgcat tttcaacatc
     5761 tcttacccat cgtgtagagt gaaaagaact ttttgtatga atccctcttc ccatgagctt
     5821 attctcgcca tcagaaatgc atttctttgc ttgcatctgt ttatgggctg cttccttcct
     5881 ttgttaaatc cagatgtact tcaggtgtct tgttttcctg gaaggtataa aaccatgaaa
     5941 cagcaaacat catgttttgt cttttacaaa atggaattag atccacatta ttatcaagtg
     6001 ttacactgtt acttgttaat gtgcttttta ctatctggct ttaataacca tgtgacattc
     6061 tttgttaaat gctgatatct ccttttgctt aacaaattta aaataattca ggatgttaga
     6121 tttgcttgta tttcatgaat taaaggaaat ttgaactaa
//
