LOCUS       XM_039095470            2920 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin interaction motif containing
            1 (Uimc1), transcript variant X1, mRNA.
ACCESSION   XM_039095470
VERSION     XM_039095470.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039095470.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2920
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2920
                     /gene="Uimc1"
                     /gene_synonym="RGD1307009"
                     /note="ubiquitin interaction motif containing 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 30 ESTs, 1 long SRA read, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 10 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:290997"
                     /db_xref="RGD:1307009"
     CDS             410..2662
                     /gene="Uimc1"
                     /gene_synonym="RGD1307009"
                     /codon_start=1
                     /product="BRCA1-A complex subunit RAP80 isoform X1"
                     /protein_id="XP_038951398.1"
                     /db_xref="GeneID:290997"
                     /db_xref="RGD:1307009"
                     /translation="MTGCVSETGETRMLVTSEMELGKRMPRRKKKIKEASEGQNLEKK
                     DLETTSSVSIKKKRRLEDLFIVISDSDGEETKEENGLQKMKTKQSNRSKCLAKRKIAQ
                     MSEEEQFALALKMSEQEAKEVNNQEEKEEELLRKAIAESLNSRWSSDASAARPRPLST
                     GPSSHPHQDSTKDSGTTEGIWQLAPPSLCKGSQISQGNEAEEGKEPWDHSENPEEEPL
                     SGSSGSQDQSSRPVFENEKVKCFDRCTGHLAEHTQCGKPQESTGSGCAFPKAVQGRGD
                     TSRQCLPTPADTKGLQDIGGTVHYYWGVPFCPAGVDPDQYTSVILCQLEVYQKSLKMA
                     QRQLVKKRGFGEPVLPRPPFLIQNECGQEEQTSEKHEGLSEDVRAGAREERQGSGASV
                     WHSETKDSQKSPITSLKQRLLLEEEPTTGRGQSSQGLFVEETSEEVLKSSEGDDAVPA
                     SQSIAVLTSKRDLVLMPEASTEEVTVCPETQLSSFEPLDLNGEDSVDGREIPTELGMT
                     VSNRQVDNREAGKDSRPPAVSASARVSCPLCNQDFPPTKIEQHAMYCTGLMEPETVLT
                     RRRREAKKKSDGRTAAQPALDISRKEKCYLCKSLVPLGEYQCHVETCLQLANVDRENG
                     TEGMRRPRVCAPVEGKPKQRLRKSKEKGHSQGRLLSLLEQSEHRTTGVERTPKCSEAG
                     AFRMPSPDVEEAGCSRERQSSLSKLNLNESPIKSFVPVSEATNCLVDFKGQFAFRSQT
                     KSGRGRRRKS"
ORIGIN      
        1 cgggagccgc tgcccggtcg tctcgctgct gcctggcggc cctggctctc gcgcccctgg
       61 cttccccctc ccgccgaggg ccgccatggt cctccggggc gttctctctt cctctccgag
      121 cttcctggga gggaggcagt ctcgtcttcc acccggctaa cggactcccg aggatggcag
      181 ctaggcctgc cgcctccccc acgttacttg gcgtgttttg tagttggttt cactagttca
      241 tcgcccgccc gagaccctgg ctggctttga actcactggg cacccaagat ggcttctaac
      301 tcgccatcct cttgcctcgg tctccggaga aagatttccc ccaggaaatc tgtatcattt
      361 accacttaac gtctcctgtc gagcctggtg catttctctc tcgtggctga tgacaggctg
      421 tgtgtcagaa accggtgaga ccagaatgtt ggtcacctcc gagatggagc taggtaaaag
      481 gatgccacga agaaagaaaa aaattaaaga agcctccgaa ggtcagaacc tcgagaagaa
      541 ggatctggaa accaccagtt ctgtcagtat aaaaaagaag cgtcgactgg aggacttatt
      601 catagtgata tctgatagtg atggagagga aacaaaagag gaaaatggat tacagaaaat
      661 gaagacaaaa cagtcaaaca gatcaaagtg tttggctaaa agaaaaattg cacagatgtc
      721 agaagaagaa caatttgctt tggctctcaa aatgagtgag caggaagcta aggaggtgaa
      781 caaccaggag gagaaagaag aagagctctt gaggaaagcc attgctgaaa gcctgaatag
      841 tcgctggtct tctgacgctt ctgctgccag accccgacct ctgtctactg ggccgtcctc
      901 acatccccat caagacagca ccaaagattc tggaaccact gaaggcatat ggcagctggc
      961 acctccatca ctgtgcaaag gctcacagat cagtcaggga aacgaggctg aggaaggaaa
     1021 ggagccctgg gaccacagtg aaaaccctga agaggagccg ctctctggca gctcaggaag
     1081 ccaggaccag tcaagccggc cagtgtttga gaatgagaag gttaaatgtt ttgacagatg
     1141 tactggccac ttggctgagc acacacagtg tgggaagcca caggaaagta ctgggagtgg
     1201 ttgtgctttt cccaaagctg ttcagggtag gggggacacg tctaggcaat gccttcctac
     1261 cccagcagac accaaaggcc tccaggacat tgggggcaca gtgcactact actggggtgt
     1321 tccattctgc cctgctggag tagaccctga tcaatacacc agtgtcattc tgtgccagtt
     1381 ggaggtgtat cagaagagct tgaaaatggc tcagagacag cttgttaaaa aaagagggtt
     1441 tggggaacca gtgttaccta gacctccttt tctgatccag aatgaatgtg gccaagaaga
     1501 gcagactagt gaaaagcatg aaggcctctc agaagatgtg agagctggag ccagggagga
     1561 aaggcagggc tctggggcat ctgtctggca ctcagaaacc aaggattctc aaaaaagtcc
     1621 cattacaagc ttgaagcaga gacttttgtt ggaggaagaa ccaacaaccg gtcgtggtca
     1681 gtcttcccaa ggtctgtttg ttgaagaaac ttctgaagaa gttctgaaga gttctgaagg
     1741 agacgacgct gtgcctgcct cacaaagcat tgcagttttg accagtaaga gagatttagt
     1801 tcttatgccg gaagcttcta cagaagaagt cactgtttgt cctgagacac agttaagttc
     1861 ctttgagccc cttgacctga atggagaaga ctctgtagat ggcagagaga tccccactga
     1921 actaggaatg acagtgagta ataggcaggt tgataatagg gaagctggta aggacagtcg
     1981 tcctcctgca gtctcggcta gtgccagggt gtcctgccca ctgtgtaacc aagacttccc
     2041 tcccacaaag attgagcagc atgccatgta ctgcactggc ctgatggagc cggaaacagt
     2101 attgactcgg agacgaagag aggccaagaa aaaaagtgat ggtaggacag ctgcgcagcc
     2161 tgccctggac atcagcagga aggagaagtg ttatctgtgt aagtccctgg ttccacttgg
     2221 ggagtatcag tgtcatgtag agacctgtct ccagcttgca aatgttgaca gagaaaatgg
     2281 gactgaaggg atgaggagac caagagtgtg tgcacctgtg gaggggaaac cgaagcagcg
     2341 actgaggaag tcaaaggaaa aaggtcatag tcaaggccga cttctcagtc tcttggagca
     2401 gtctgagcac aggaccacag gtgtagagag aacccccaag tgttccgaag caggagcctt
     2461 caggatgccc tcaccagatg tggaagaggc tggctgcagc agagagaggc agagttcgct
     2521 ctcaaagctc aacttaaatg agtctcccat caagtctttt gttcctgttt cagaagctac
     2581 aaattgctta gtggacttta aaggccaatt tgctttccgg tcacaaacca aatcaggcag
     2641 aggaaggagg agaaaatctt gaatttcttg agactggagg atgaccagaa tgattgttgt
     2701 tggattggtc atgttcatta attattgtgg tctccagttt gctgtgagag ttctgaccct
     2761 gttgttttca ccaccagcgt ctgttcagca ccctgatttt tatgttttat aagatctctt
     2821 cagacaactg tgaatagtat tctgttttac aacagtctgt ttgaatttgc ttatagttaa
     2881 aatttaaata tatttatctt tgtatgaaat cttttttcaa
//
