LOCUS       XM_039093988            4783 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus UDP-glucose glycoprotein
            glucosyltransferase 2 (Uggt2), mRNA.
ACCESSION   XM_039093988
VERSION     XM_039093988.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 8 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-232               JACYVU010000272.1  52722295-52722526   c
            233-315             JACYVU010000272.1  52716928-52717010   c
            316-446             JACYVU010000272.1  52711893-52712023   c
            447-559             JACYVU010000272.1  52711342-52711454   c
            560-734             JACYVU010000272.1  52710255-52710429   c
            735-831             JACYVU010000272.1  52703226-52703322   c
            832-907             JACYVU010000272.1  52700888-52700963   c
            908-1008            JACYVU010000272.1  52693553-52693653   c
            1009-1108           JACYVU010000272.1  52689881-52689980   c
            1109-1169           JACYVU010000272.1  52688242-52688302   c
            1170-1193           JACYVU010000272.1  52681731-52681754   c
            1194-1194           "N"                1-1
            1195-1261           JACYVU010000272.1  52681664-52681730   c
            1262-1412           JACYVU010000272.1  52678162-52678312   c
            1413-1421           JACYVU010000272.1  52675355-52675363   c
            1422-1478           JACYVU010000272.1  52675297-52675353   c
            1479-1532           JACYVU010000272.1  52675242-52675295   c
            1533-1618           JACYVU010000272.1  52674442-52674527   c
            1619-1718           JACYVU010000272.1  52673925-52674024   c
            1719-1754           JACYVU010000272.1  52673888-52673923   c
            1755-1886           JACYVU010000272.1  52668437-52668568   c
            1887-2051           JACYVU010000272.1  52655883-52656047   c
            2052-2175           JACYVU010000272.1  52655455-52655578   c
            2176-2274           JACYVU010000272.1  52655277-52655375   c
            2275-2370           JACYVU010000272.1  52642879-52642974   c
            2371-2462           JACYVU010000272.1  52636642-52636733   c
            2463-2463           "N"                1-1
            2464-2558           JACYVU010000272.1  52636547-52636641   c
            2559-2576           JACYVU010000272.1  52636528-52636545   c
            2577-2606           JACYVU010000272.1  52635104-52635133   c
            2607-2642           JACYVU010000272.1  52635067-52635102   c
            2643-2708           JACYVU010000272.1  52635000-52635065   c
            2709-2833           JACYVU010000272.1  52631350-52631474   c
            2834-2929           JACYVU010000272.1  52629908-52630003   c
            2930-3032           JACYVU010000272.1  52615413-52615515   c
            3033-3112           JACYVU010000272.1  52612197-52612276   c
            3113-3302           JACYVU010000272.1  52604986-52605175   c
            3303-3461           JACYVU010000272.1  52599436-52599594   c
            3462-3547           JACYVU010000272.1  52598793-52598878   c
            3548-3632           JACYVU010000272.1  52594929-52595013   c
            3633-3715           JACYVU010000272.1  52591892-52591974   c
            3716-3811           JACYVU010000272.1  52587410-52587505   c
            3812-3896           JACYVU010000272.1  52586454-52586538   c
            3897-4079           JACYVU010000272.1  52583908-52584090   c
            4080-4240           JACYVU010000272.1  52580460-52580620   c
            4241-4355           JACYVU010000272.1  52579448-52579562   c
            4356-4472           JACYVU010000272.1  52569756-52569872   c
            4473-4599           JACYVU010000272.1  52567310-52567436   c
            4600-4783           JACYVU010000272.1  52557718-52557901   c
FEATURES             Location/Qualifiers
     source          1..4783
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4783
                     /gene="Uggt2"
                     /note="UDP-glucose glycoprotein glucosyltransferase 2; The
                     sequence of the model RefSeq transcript was modified
                     relative to its source genomic sequence to represent the
                     inferred CDS: inserted 2 bases in 2 codons; deleted 6
                     bases in 6 codons; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 13 ESTs, 1 long SRA read,
                     1 Protein, and 91% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:361091"
                     /db_xref="RGD:1563520"
     CDS             75..4616
                     /gene="Uggt2"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     deleted 6 bases in 6 codons; substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:900..902,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: UDP-glucose:glycoprotein
                     glucosyltransferase 2"
                     /protein_id="XP_038949916.1"
                     /db_xref="GeneID:361091"
                     /db_xref="RGD:1563520"
                     /translation="MARAGAAKGLRLLLRSVALWLALLGASTATASKAVTAHLAAKWP
                     ETPLLLEASEFMAEESNEKFWQFVETVTELAVYKQTESDYSYYNLILKKAGQFLDNIH
                     INLLKFAFSIRAYSPTIQMSQQVAAEEPPPDGCAAFVVVHTKRTCKTSELKKLLSKAA
                     SRPRPYLFERDHKFPTSSENLPVVILYAEIGTRAFAEFHRVLSKKSKNGKILYVLRHY
                     IKKPSSRKMYLSGYGVELAIKDTEYKALDDIQIKATTDATVENETGADEVQGFLLGNX
                     SEEIYSDLKENLTIFQKYLIESSKEMTPLKVWELQDLSFQAASRIASTPVYDAIKLMK
                     DISQNFPVKARSLTRIAVNELLRKEIQENQKDLRDRFEIXPGDAHLFINGLPVDLDVY
                     DPFSILDLLRSEGSCLSGLKSLGLSEEERSRFLKLNSPVWDDDFVLDIRHSSIVWIND
                     LENDALYTDWPTSCWEFLKPVLHGTVPSVRRNFHNLVLFIDPAQEYTLDFINLAEFFY
                     FNEIPLRIGFVFILTMDNDVDGTTDAGVALWRAFSYIEENDGVSEAFLSMTHMYQKVK
                     GRHILTVDDVRTVLQNKFPHADILDILGTHSKYDSRRKEGANFYKMTGLGPLPQALYN
                     GEHFGLKEIDTEELKGAILEKMMDAFIYLQRDVFMGKITDEINAIDFLMDKSNVVPRL
                     NSLILHTEPQYLNLLSSSVTADIEDFSTFSFLDSQDKSAVVAKHMHYLTRDDAVISAV
                     TLWIVADFDVPSGRKLLSHALEHMVRNNFHSRLGIVYNPTSKINEENTAISRGILAXF
                     LTHENDLLRSFLRKLAKEETAEAIYSGDKIKTFLATEMDKNAFEKIYNTIGVNIFRTH
                     QLFCQEVLKLRPGEPGIVSNGRFLGPLNEELHKEDFHLLEKITFSDSVVKIAGIVENM
                     EMNSKHMSDLVMKIDVLTSSLPVRASRSDVTLLKENLSVIKINPPENDTFFDVIAVVD
                     PLTREAQKMTQLLDVLGKIVNVRMKLFMNCRGKLSEAPLDSFYRFVLEPEPFSGASNS
                     PSQGPVAKFLDIPESHLLTLNMITPEGWLVEPVHSNCDLDNINLKDIERSVTAEYELE
                     HLLLEGHCFDMTTEQPPQGLQFTLGTRSNPDVVDTIVMANLGYFQLKANPGAWILKLR
                     EGKSEDIYEIIGHEGADSETDVGNVIVVLNTFKSKILKVQVKKKSGKIKEDVLADKHE
                     DRGMWDSIKSFTESLQKDGRKDNNILNIFSVASGHLYERFLRIMMLSVLRNTKTPVKF
                     WFLKNYLSPTFKEVIPHMAKEYGFQYELVQYKWPRWLHQQSEKQRIIWGYKILFLDVL
                     FPLAVDKVIFVDADQIVRHDLTELRDFDLDGAPYGYTPFCDSRTEMDGYRFWKTGYWA
                     SHLVKRKYHISALYVVDLKKFRRISAGDRLRGQYQALSQDPNSLSNLDQDLPNNMIYQ
                     VAIKSLPQDWLWCETWCDDESKQRAKTIDLCNNPKTKEPKLEAAARIVPEWVEYDTEI
                     RKLLDHLENKKKSTIHDEL"
ORIGIN      
        1 ccaccggaag tgggcggcag ggtaccagga ggagcagacc ttagcgtggc ttctcgcgct
       61 tccctcagcg cgccatggcg cgggccggag ccgcgaaggg actgcggctg ctcctacgtt
      121 ccgtcgcgct gtggctcgcc ctgctcggcg ccagcacggc gactgcgtcc aaggcggtga
      181 ccgcacactt ggctgcgaag tggcccgaga ccccgctgct gctggaggcc agtgaattca
      241 tggcagaaga aagtaatgaa aagttttggc agtttgtgga aacagtaaca gaattagcag
      301 tctataagca gacggaatca gattattctt actacaacct aatcctgaag aaagctgggc
      361 agtttttaga caatatacac atcaacctcc taaagtttgc tttctcgata agggcatact
      421 ctcccacgat tcagatgtcc caacaggttg ctgccgagga gccaccacca gatggctgcg
      481 cagcgtttgt ggtcgtgcat acaaagcgga cctgcaaaac cagcgaactt aagaagttgc
      541 tgagtaaggc tgcgtcaagg cccaggcctt acctatttga aagagaccat aagtttccca
      601 caagcagtga gaacttacca gtggttattc tctatgcaga aattggtaca agagcgtttg
      661 ctgaatttca cagagtattg tctaagaaat caaaaaatgg taaaatcctg tatgttctcc
      721 gccactacat caagaaacca agctcaagaa aaatgtactt atctggctat ggagtggagc
      781 tggcaattaa agatacagaa tacaaggcat tggatgatat ccaaattaaa gctacgactg
      841 atgccactgt agaaaatgag accggagcag atgaagttca aggatttctt ttgggaaact
      901 gaagtgaaga aatatattca gatcttaaag agaatctgac aatattccaa aagtacctga
      961 ttgagagcag caaagaaatg acacctttga aggtctggga attacaagat cttagttttc
     1021 aagcagcctc tcgaatagct tccactcctg tttatgatgc cataaagtta atgaaagata
     1081 tttcacagaa ctttcctgta aaagccagat ctctcaccag gattgctgta aatgagctac
     1141 tgagaaaaga aatacaggaa aaccagaagg acttacgtga tagattcgaa atantgccag
     1201 gtgatgctca tctgtttatc aatggccttc ctgttgactt agatgtttat gaccccttta
     1261 gtattttaga tttgctgaga tcagaaggaa gctgcctgag tggccttaaa agtcttgggc
     1321 tcagtgaaga agagaggagc aggtttttaa aattaaactc acccgtgtgg gacgatgact
     1381 ttgttttaga tattcggcat tcttcaatag tgtggatcaa tgacttagaa aatgacgctt
     1441 tgtatactga ttggccgaca agttgctggg aatttctaaa gccagtatta catggaacag
     1501 tgccttctgt aaggcgtaat tttcataatt tggttctgtt tattgatcct gctcaagaat
     1561 ataccttgga ctttataaat ttggcagaat ttttttattt taatgaaatc cctcttcgaa
     1621 ttggctttgt cttcattctt actatggaca atgacgttga tggaacaaca gatgctgggg
     1681 ttgctctttg gcgagctttc agttatattg aagaaaacga tggtgtgtca gaagcatttc
     1741 tttctatgac acatatgtac caaaaagtga agggtcgtca tatactcact gtggatgatg
     1801 tgaggactgt tcttcaaaat aaatttcctc atgccgacat tttggatatc ttgggaaccc
     1861 attccaagta tgacagcaga agaaaggaag gagcaaactt ttataagatg accggcctag
     1921 gtcctttgcc tcaagctctt tataacggtg aacactttgg cctcaaagag atagacactg
     1981 aagaactaaa aggggccatt ctggaaaaaa tgatggatgc gtttatatat ctacaaagag
     2041 acgtttttat gggcaaaata acggatgaaa tcaatgcgat tgatttcctg atggacaaga
     2101 gtaacgttgt accccggcta aattctttga ttttgcacac tgaaccacag tatcttaact
     2161 tactgtcttc atcagtaact gctgatattg aagatttctc tactttctcc ttcctggatt
     2221 cacaagacaa gagtgctgtt gtcgcaaagc acatgcatta cttaacccga gacgatgctg
     2281 tcatatctgc agtcactctg tggattgttg ctgattttga tgtgccgtcg gggagaaaac
     2341 tgctctctca tgcgttagag cacatggtga gaaacaactt tcatagtcgg ttaggaattg
     2401 tttacaaccc cacgtcaaag ataaatgagg agaacacagc catttctaga ggaattttgg
     2461 cangctttct tacacatgaa aacgacctct tgagaagctt tctcaggaaa ctggcaaaag
     2521 aagaaactgc tgaagcaatt tattctggag ataaaattaa aaccttcctt gctacggaga
     2581 tggataagaa tgcttttgag aaaatatata acaccattgg agtaaatatt ttccgaactc
     2641 accagttatt ctgtcaagag gttcttaagc tgcgacctgg agagcccggg attgtcagca
     2701 atggaagatt cttaggacct ttaaatgaag agctccacaa agaagatttt cacttgcttg
     2761 aaaagataac atttagtgat tcagtagtga aaatcgcagg cattgttgag aatatggaaa
     2821 tgaactcaaa acacatgagc gacctcgtga tgaaaataga tgtgcttacc tcttcattgc
     2881 ccgtgcgtgc ctctcgctct gatgtcacgt tactcaaaga aaatctcagt gttataaaga
     2941 taaatcctcc agagaacgat acgttttttg atgtcattgc tgttgtcgat cctttgacaa
     3001 gagaagctca gaagatgaca cagttactgg atgtgcttgg gaagatcgtg aacgtgagga
     3061 tgaagctgtt catgaactgc aggggtaagc tttcagaagc cccgttagac agcttttacc
     3121 gttttgttct ggaaccagag ccattctcag gggctagcaa tagtccttct caaggaccag
     3181 tggcaaagtt cctggacatc ccagaatcac accttctgac cctcaacatg atcaccccag
     3241 aaggatggct ggtggagcca gtacacagca actgtgacct tgacaacatt aacttaaagg
     3301 atattgagag gagtgttaca gcagagtatg aactagagca tctgctcctt gaaggacatt
     3361 gctttgacat gaccacagaa cagcccccgc agggcctgca gttcacgctg ggcacaagaa
     3421 gcaatcctga cgtagttgac acaatagtaa tggccaatct gggatatttt caactaaaag
     3481 ccaacccagg tgcatggata ctaaaattac gtgaaggaaa atcagaagat atttatgaaa
     3541 taattgggca tgaaggagca gactctgaga ctgacgtagg caatgtcatt gtcgtgttaa
     3601 atactttcaa gagcaagatt ctgaaagtgc aggtaaagaa aaaatcaggt aaaattaaag
     3661 aagatgtcct tgctgataaa catgaagata gaggcatgtg ggattcaatt aaaagcttca
     3721 cagaaagtct gcagaaagat ggcagaaagg acaacaacat cctaaacatt ttttcagttg
     3781 cctctggcca tttatatgag cggtttctac ggattatgat gctttctgtt ctgcggaaca
     3841 ccaaaacacc agtgaagttc tggttcctga agaattacct ctcgccaaca tttaaagagg
     3901 tgatccctca catggctaag gaatatggat tccagtacga gcttgtccag tacaagtggc
     3961 cccgctggct gcaccaacag agcgaaaagc agcggatcat ctggggctac aaaatccttt
     4021 tcctcgacgt ccttttccca ctggctgtgg acaaggtcat atttgttgat gctgaccaga
     4081 tcgtgaggca tgacctgaca gaacttcgag actttgatct ggatggagct ccttacggat
     4141 atactccgtt ctgtgatagc cgcactgaaa tggatggata ccgtttctgg aagacgggat
     4201 actgggcatc acatctcgta aaaaggaaat accatatcag cgccttatac gtggtggatc
     4261 ttaagaagtt caggagaatt tcagcaggtg acaggctccg gggccagtac caagctctta
     4321 gccaagatcc aaatagtctt tcaaacctag atcaggatct ccccaacaat atgatttacc
     4381 aagttgccat caagtctctt cctcaagact ggctgtggtg cgaaacctgg tgtgatgacg
     4441 aatctaagca aagagccaag acaatcgacc tgtgcaataa tcccaaaaca aaagaaccca
     4501 aactagaagc tgccgcaagg attgtcccag aatgggtaga gtatgatacc gagatccgga
     4561 aactattaga tcatcttgaa aataagaaga aaagtacaat tcatgatgaa ctctagcaca
     4621 gacgatgaga acgatggaaa tctgccacct gctggaaatt tgtggaactg ctaagactag
     4681 taggccattc gttccaatta ttgacataag gttggctggt tttttataag ctttatttaa
     4741 aacacatgta aagttttaaa ataaacttaa tttatgtgat tga
//
