LOCUS       XM_039105715            1862 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uridine-cytidine kinase 1-like 1
            (Uckl1), transcript variant X3, mRNA.
ACCESSION   XM_039105715
VERSION     XM_039105715.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039105715.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1862
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1862
                     /gene="Uckl1"
                     /gene_synonym="RGD1565465"
                     /note="uridine-cytidine kinase 1-like 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 14 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     165 samples with support for all annotated introns"
                     /db_xref="GeneID:499956"
                     /db_xref="RGD:1565465"
     CDS             75..1718
                     /gene="Uckl1"
                     /gene_synonym="RGD1565465"
                     /codon_start=1
                     /product="uridine-cytidine kinase-like 1 isoform X3"
                     /protein_id="XP_038961643.1"
                     /db_xref="GeneID:499956"
                     /db_xref="RGD:1565465"
                     /translation="MAAPPGSAGAAPSPLQSTVTPDVPGRPAEQNETSCEDRNAGSLD
                     RLLPPVGTGRSPRKRTTSQCKSEPPLLRTSKRTIYTAGRPPWYNEHGTQSKEAFAIGL
                     GGGSASGKTTVARMIIEALDVPWVVLLSMDSFYKVLTQQQQEQAACNNFNFDHPDAFD
                     FDLIISTLKKLKQGRSVQIPIYDFTTHSRKKDWKTLYGANVIIFEGIMAFADKTLLEL
                     LDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPAFDQYIQPTMRLADI
                     VVPRGSGNTVAIDLIVQHVHSQLEERELSVRAALASAHQCHPLPQTLSVLKSTPQVRG
                     MHTIIRDKETSRDEFIFYSKRLMRLLIEHALSFLPFQDCTVQTPQGQDYVGKCYAGKQ
                     ITGVSILRAGETMEPALRAVCKDVRIGTILIQTNQLTGEPELHYLRLPKDISDDHVIL
                     MDCTVSTGAAAMMAVRVLLDHDVPEDKIFLLSLLMAEMGVHSVAYAFPRVRIITTAVD
                     KRVNDLFRIIPGIGNFGDRYFGTDAVPDGSDDDEVTSVG"
ORIGIN      
        1 cttgtgggga ttgtagtccg cagcgcgcct gcctccgggc gcgcctcccc ggcctccgcc
       61 aggttcggga cgccatggct gcgccgcccg gctccgcggg tgctgcccct tcgcccctgc
      121 aatccactgt gaccccagac gtgcctggcc gcccggccga gcagaatgaa acatcgtgcg
      181 aggaccgcaa tgcagggtcc ttggacagac ttctcccacc agtgggtact gggcgctcac
      241 cccggaagcg caccaccagc cagtgcaagt ccgagccacc cctgcttcgt acaagcaaac
      301 gaaccattta cacagctggg cggccaccat ggtacaacga acatggtacc cagtccaagg
      361 aagcctttgc cattggctta ggaggcggca gtgcgtctgg gaagaccact gtggccagga
      421 tgatcattga ggccctagat gtaccctggg tggtcctgct gtccatggac tccttctata
      481 aggttctgac acagcagcag caggaacagg ccgcctgcaa caatttcaac tttgaccacc
      541 ctgatgcctt cgacttcgat ctcatcattt ccaccctcaa gaaactaaag cagggcagga
      601 gtgtccaaat acccatctat gatttcacca cccatagccg gaaaaaggac tggaaaacac
      661 tgtacggtgc aaatgtcatc atctttgagg gtatcatggc ctttgctgac aagacactgc
      721 tagagcttct ggacatgaag atctttgtgg acacagactc tgacatccga ctggtacggc
      781 ggctgcgcag ggacatcagt gagcgaggcc gggacattga gggtgtcatc aagcagtaca
      841 acaagtttgt caaacctgct ttcgatcagt acatccagcc caccatgcgc ctggcagata
      901 tcgtggtgcc cagagggagc gggaacacag tagccattga cctgattgtg cagcatgttc
      961 acagccagct ggaagagcgt gaactcagcg tcagggccgc gttggcctct gctcaccagt
     1021 gccatcccct tccccagaca ctgagtgtcc tcaagagcac accacaggta cgaggcatgc
     1081 acaccatcat cagggacaag gagactagcc gggacgaatt cattttctac tccaaaagac
     1141 tgatgcggct gcttattgaa cacgcgctgt ctttcctgcc ctttcaggac tgcactgtac
     1201 agactccaca ggggcaggac tacgtgggaa agtgctacgc tggaaaacag atcaccggcg
     1261 tgtccattct gcgtgcggga gaaaccatgg agcctgcgct gcgtgctgtg tgcaaggacg
     1321 tgcgtatcgg caccatcctc atccagacca accagctcac aggggagcct gagctccatt
     1381 acctgagact tcccaaggat attagtgatg accatgtgat cctgatggac tgcacagtat
     1441 ctacgggtgc tgcagccatg atggctgtac gtgtactcct ggaccatgat gtgcctgagg
     1501 acaagatctt tttgctatcc ctgcttatgg cagagatggg cgtacattct gtggcctatg
     1561 cattcccacg tgtgagaatc atcaccacag ccgtggacaa gcgtgtcaat gaccttttcc
     1621 gtatcatccc aggcattggg aactttggtg accggtactt tgggacagat gcagtccctg
     1681 acggcagtga tgatgatgag gttacctctg tgggttaatt ccctgtccga gctactctta
     1741 cttctaccca gccttctgtc cggagtcaca gacacgacac attaacttat ttgaatttta
     1801 aaatgttacc aataatattc agtttacaca ttttataaaa taaataaagc ttcagaaaat
     1861 ga
//
