LOCUS       NM_001012025            2508 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus UBX domain protein 4 (Ubxn4), mRNA.
ACCESSION   NM_001012025 XM_222627
VERSION     NM_001012025.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2508)
  AUTHORS   Lim,P.J., Danner,R., Liang,J., Doong,H., Harman,C., Srinivasan,D.,
            Rothenberg,C., Wang,H., Ye,Y., Fang,S. and Monteiro,M.J.
  TITLE     Ubiquilin and p97/VCP bind erasin, forming a complex involved in
            ERAD
  JOURNAL   J Cell Biol 187 (2), 201-217 (2009)
   PUBMED   19822669
REFERENCE   2  (bases 1 to 2508)
  AUTHORS   Akiyama,K., Morita,H., Suetsugu,S., Kuraba,S., Numata,Y.,
            Yamamoto,Y., Inui,K., Ideura,T., Wakisaka,N., Nakano,K., Oniki,H.,
            Takenawa,T., Matsuyama,M. and Yoshimura,A.
  TITLE     Actin -related protein 3 (Arp3) is mutated in proteinuric BUF/Mna
            rats
  JOURNAL   Mamm Genome 19 (1), 41-50 (2008)
   PUBMED   18064521
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Mar 18, 2021 this sequence version replaced NM_001012025.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088845.1, SRR26643290.41910.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-430               JAXUCZ010000013.1  42292498-42292927
            431-533             JAXUCZ010000013.1  42299509-42299611
            534-562             JAXUCZ010000013.1  42302260-42302288
            563-681             JAXUCZ010000013.1  42303297-42303415
            682-853             JAXUCZ010000013.1  42306662-42306833
            854-947             JAXUCZ010000013.1  42307242-42307335
            948-1002            JAXUCZ010000013.1  42309073-42309127
            1003-1167           JAXUCZ010000013.1  42310518-42310682
            1168-1292           JAXUCZ010000013.1  42313582-42313706
            1293-1395           JAXUCZ010000013.1  42318135-42318237
            1396-1527           JAXUCZ010000013.1  42320945-42321076
            1528-1730           JAXUCZ010000013.1  42322050-42322252
            1731-2508           JAXUCZ010000013.1  42324151-42324928
FEATURES             Location/Qualifiers
     source          1..2508
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q13"
     gene            1..2508
                     /gene="Ubxn4"
                     /gene_synonym="Ubxd2"
                     /note="UBX domain protein 4"
                     /db_xref="GeneID:304766"
                     /db_xref="RGD:1307451"
     exon            1..430
                     /gene="Ubxn4"
                     /gene_synonym="Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     CDS             349..1869
                     /gene="Ubxn4"
                     /gene_synonym="Ubxd2"
                     /note="erasin; UBX domain-containing protein 2; UBX domain
                     containing 2"
                     /codon_start=1
                     /product="UBX domain-containing protein 4"
                     /protein_id="NP_001012025.1"
                     /db_xref="GeneID:304766"
                     /db_xref="RGD:1307451"
                     /translation="MLWFQGAIPAAIASAKRSGAVFVVFVAGDDEQSTQMAASWEDEK
                     VREASSDNFVAIKIDTKSEACLQFSQIYPVVCVPSSFFIGDSGIPLEVIAGSVSADEL
                     VTRIHKVQQMHSLKGETSVTNDKQSESSVSTPSASFEPDICESAESRNTELCETPTTS
                     DPKSDTAAGGECAGHDSLSQEPPGCSNQRPAEDLTVRVERLTKKLEERREEKRKEEAQ
                     REIKKEIERRKTGKEMLDYKRKQEEELTKRMLEERSREKAEDRAARERIKQQIALDRA
                     ERAARFAKTKEAEAAKAAALLAKQAEAEVKRESSTRDRSTIARIQFRLPDGSSFTNQF
                     PSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRKLLDLELAPSASVVLL
                     PAGRPATSIVPSSSGDIWTLLGTVLYPFLAIWRLISNFLFSNPPPAQTSARATSTEPS
                     NSASSSKSEKREPVRKRVLEKRGEDFKKEGKIYRLRTQDDGEDENNTWNGNSTQQM"
     exon            431..533
                     /gene="Ubxn4"
                     /gene_synonym="Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            534..562
                     /gene="Ubxn4"
                     /gene_synonym="Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            563..681
                     /gene="Ubxn4"
                     /gene_synonym="Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            682..853
                     /gene="Ubxn4"
                     /gene_synonym="Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            854..947
                     /gene="Ubxn4"
                     /gene_synonym="Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            948..1002
                     /gene="Ubxn4"
                     /gene_synonym="Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1003..1167
                     /gene="Ubxn4"
                     /gene_synonym="Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1168..1292
                     /gene="Ubxn4"
                     /gene_synonym="Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1293..1395
                     /gene="Ubxn4"
                     /gene_synonym="Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1396..1527
                     /gene="Ubxn4"
                     /gene_synonym="Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1528..1730
                     /gene="Ubxn4"
                     /gene_synonym="Ubxd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1731..2508
                     /gene="Ubxn4"
                     /gene_synonym="Ubxd2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tagcggttag tcatccttcc tgatacttcc acttcctgga gtcggaacct gaggcttcgc
       61 gggggcgcgc acacacggac ttacctagga gacaaggcac cggggcgcgc gacccctgac
      121 gaggagtgtt gtcacgtgac acaggggcgt gctattcttg ccttgcgcgc tcctgtgcgc
      181 gtccccaggg ggcggctgtc gggcgtacgg gccagctggg tcgtcaggcc aggggctagg
      241 ctagccggtg gttgccgggg ccacgaggcc agagaacgag gagggcgggg tcggctgtga
      301 gaccgcggcg acgacacacc gagcgagcgc ccgggcctga ggggagcgat gctgtggttc
      361 cagggcgcca tcccggcggc catcgcgtct gctaagagga gcggcgcggt cttcgtggtg
      421 ttcgtggcag gggacgatga gcaatctaca cagatggctg caagttggga agatgagaaa
      481 gtgagggaag catcatcaga caactttgtt gctattaaaa ttgatactaa aagcgaagcc
      541 tgtctacagt tttcacaaat ttatcctgta gtgtgtgttc cgtccagttt ctttatagga
      601 gacagtggaa tccctttgga agtaatagca gggagtgttt ctgcagatga acttgttaca
      661 agaattcaca aagtccaaca gatgcactca ttgaaaggtg aaacatcagt gacaaatgac
      721 aaacagtcag aaagttccgt atctacccca tctgcctcat ttgaacctga catatgtgaa
      781 agtgccgagt ccagaaatac agagctttgt gagacaccaa ctacttctga cccaaagtca
      841 gatactgcag caggaggaga atgcgcaggt catgacagcc tctctcagga gcctcctgga
      901 tgttcaaacc agagaccagc agaggacctc accgtcagag tggaaagatt aacaaaaaag
      961 cttgaagaaa ggagagaaga gaagaggaag gaagaggccc agagagagat taagaaggaa
     1021 attgaaagga gaaaaactgg aaaggaaatg ttggattata aaagaaaaca agaagaagaa
     1081 ttaacaaaaa gaatgttaga agaaagaagc agagaaaagg cagaagatag agcagctcgg
     1141 gagcgcatca agcagcagat tgcactggat cgtgcagaaa gagctgctcg ttttgcaaag
     1201 acaaaggaag cagaggctgc caaagctgct gccttgctgg ccaaacaggc agaagcagaa
     1261 gtcaagaggg agtcttccac acgggacaga agcaccattg caagaattca gttccggctg
     1321 cctgatggtt cttcctttac aaaccagttt ccttctgatg ctcctttaga agaagcaagg
     1381 cagtttgctg cacagactgt tggcaacaca tatggtaatt tttcactagc aactatgttt
     1441 cccagaagag agttcaccag agaggactat aagaggaagc tgctggatct ggagctggcc
     1501 cccagcgcct ctgtggtgct gctgccagca ggacggccag ccacatccat tgtcccctct
     1561 tctagtggag acatttggac attactggga acggtgcttt atccattcct ggccatatgg
     1621 agactaatta gcaatttttt atttagtaat cctcctcctg cacagacttc agcaagagcc
     1681 acgtccacag agccttcaaa ctcggcgtca tccagcaagt cagagaaaag ggaacctgtc
     1741 cggaaaagag tgctggaaaa acgaggagaa gactttaaaa aggaggggaa aatataccga
     1801 ctgcggactc aagatgacgg cgaagatgag aacaacactt ggaatgggaa ctccacgcag
     1861 cagatgtagt ccggagtgta cgctccccgc tgcttccttt aggatccact cagcactttt
     1921 ctgctgggga agtgggtctg ctctatgttt ccagaccatt atagtctatt tctgctaaga
     1981 gattgtgagt taagttgttt aacctgaaaa agtcagaaca tgaagtagct ggatgctagg
     2041 tccttgtcta atcaataggg taaccagctg ctcagcctaa aagaagccaa ggctgccccc
     2101 gccaccgcca cttcctactc agacttcaca gccctctagc ccagcgtttc atttaggaca
     2161 ctttttgctg caagattctc aagccacaca gtaattggta tgtcactgag tagtctgagc
     2221 cccgagcact taagcgagct aatcaggtga taactgatgt ttagcgtttc tctttgcact
     2281 catcagcctc aaaaaaaatc ttgttgtttc taatcttact taaatattaa ataaaagttt
     2341 tcaaaaaacc agaatgatct tatttttgct gtaaagcatc tttttgttgt acagggctgt
     2401 accgaggtca cttttgtttg actttttcct cccagtgctg ccctgattct gtcagcaaaa
     2461 caactgactg actgcctttc ttttaaaaaa taaaatgtag agactgtg
//
