LOCUS       NM_001109482            4454 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus UBX domain protein 2A (Ubxn2a), mRNA.
ACCESSION   NM_001109482 XM_001063667 XM_006239861
VERSION     NM_001109482.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4454)
  AUTHORS   Tarantino,C., Paolella,G., Cozzuto,L., Minopoli,G., Pastore,L.,
            Parisi,S. and Russo,T.
  TITLE     miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic
            stem cells
  JOURNAL   FASEB J 24 (9), 3255-3263 (2010)
   PUBMED   20439489
REFERENCE   2  (bases 1 to 4454)
  AUTHORS   Rezvani,K., Teng,Y., Pan,Y., Dani,J.A., Lindstrom,J., Garcia
            Gras,E.A., McIntosh,J.M. and De Biasi,M.
  TITLE     UBXD4, a UBX-containing protein, regulates the cell surface number
            and stability of alpha3-containing nicotinic acetylcholine
            receptors
  JOURNAL   J Neurosci 29 (21), 6883-6896 (2009)
   PUBMED   19474315
  REMARK    GeneRIF: The data of this study suggested that UBXD4 modulates the
            distribution of alpha3* nAChRs between specialized intracellular
            compartments and the plasma membrane.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On or before Jun 3, 2021 this sequence version replaced
            XM_006239861.4, NM_001109482.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.24781.1,
                                           SRR26360194.951005.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-228               JAXUCZ010000006.1  33631975-33632202   c
            229-282             JAXUCZ010000006.1  33628696-33628749   c
            283-424             JAXUCZ010000006.1  33622937-33623078   c
            425-531             JAXUCZ010000006.1  33618390-33618496   c
            532-669             JAXUCZ010000006.1  33614434-33614571   c
            670-828             JAXUCZ010000006.1  33612601-33612759   c
            829-4454            JAXUCZ010000006.1  33603804-33607429   c
FEATURES             Location/Qualifiers
     source          1..4454
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q14"
     gene            1..4454
                     /gene="Ubxn2a"
                     /gene_synonym="Ubxd4"
                     /note="UBX domain protein 2A"
                     /db_xref="GeneID:685859"
                     /db_xref="RGD:1589027"
     exon            1..228
                     /gene="Ubxn2a"
                     /gene_synonym="Ubxd4"
                     /inference="alignment:Splign:2.1.0"
     exon            229..282
                     /gene="Ubxn2a"
                     /gene_synonym="Ubxd4"
                     /inference="alignment:Splign:2.1.0"
     CDS             242..1018
                     /gene="Ubxn2a"
                     /gene_synonym="Ubxd4"
                     /note="UBX domain containing 4"
                     /codon_start=1
                     /product="UBX domain-containing protein 2A"
                     /protein_id="NP_001102952.1"
                     /db_xref="GeneID:685859"
                     /db_xref="RGD:1589027"
                     /translation="MKEVDNLDSIKEEWVCETGPPDNQPLNDNPQKDCEYFVDSLFEE
                     AEKAGAKCLSPTEQKKQVDVNIKLWKNGFTVNDDFRSYSDGASQQFLNSIKKGELPSE
                     LQGVFDKDEVDVKVEDKKNEVCMSTKPVFQPFSGQGHRLGSATPRIVSKAKSIEVDNK
                     STLSAVSLNNLEPITRIQIWLANGERTVQRFNISHRVSHIKDFIEKYQGTQRSPPFAL
                     ATALPFLRFLDETLTLEEADLQNAVIIQRLQKTAEPFRKL"
     exon            283..424
                     /gene="Ubxn2a"
                     /gene_synonym="Ubxd4"
                     /inference="alignment:Splign:2.1.0"
     exon            425..531
                     /gene="Ubxn2a"
                     /gene_synonym="Ubxd4"
                     /inference="alignment:Splign:2.1.0"
     exon            532..669
                     /gene="Ubxn2a"
                     /gene_synonym="Ubxd4"
                     /inference="alignment:Splign:2.1.0"
     exon            670..828
                     /gene="Ubxn2a"
                     /gene_synonym="Ubxd4"
                     /inference="alignment:Splign:2.1.0"
     exon            829..4454
                     /gene="Ubxn2a"
                     /gene_synonym="Ubxd4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagcgcgctc ccgtttcctc aggcgcgctc ctccgagccg cgcggagtcg cgcggagccg
       61 tccccggcgc gcgccgcgcg gcctgaggga ggcgggtcag atctgcgcgg tctggccgct
      121 ggtcccgaga gggtttcccg gcgctcctgg gctgagggac tgaagcccgg cggcggcgct
      181 tgccggcccc cggggaccga ggactaggcc gtggggccgc gccctgagta gcacaaagag
      241 aatgaaagaa gtagataatc ttgacagtat aaaagaagaa tgggtttgtg aaacaggacc
      301 tcctgacaat caacccctca atgataatcc acaaaaggac tgtgaatatt ttgttgacag
      361 cctttttgag gaagcagaga aggctggtgc caaatgcttg tcccccactg aacagaagaa
      421 acaggtagat gtaaatataa aattgtggaa aaatggattc actgtcaatg atgattttag
      481 aagttactct gatggtgcaa gtcagcagtt tctgaactcc atcaaaaagg gggaattacc
      541 ttcagaatta cagggagttt ttgataaaga tgaggtggat gttaaagttg aagataaaaa
      601 aaatgaagta tgtatgtcta caaagcctgt gttccaaccc ttctcaggac agggccacag
      661 actaggaagt gctacaccaa gaatcgtttc taaagcaaag agtattgaag ttgacaataa
      721 aagcactttg tctgctgttt cactgaacaa cttggaaccc atcaccagga tccagatctg
      781 gttagccaac ggggaaagga ctgtccaaag atttaacatt tctcataggg tgagccacat
      841 caaagacttc attgaaaaat accaaggaac tcagagaagc cctccctttg ccctggcaac
      901 agctcttcct ttcctcagat ttctggatga gacgctcaca ttggaagaag cagacttgca
      961 gaatgctgta atcattcaga gactccaaaa aactgccgaa ccttttagaa aactctgata
     1021 gtttttattt ttgagagact gagagaaatg atggttggca tcagacatgc tgaagtggga
     1081 gatagaagtc agtatgacca aagttgtggt ttgagggctt cttaatccct tatgaggggt
     1141 tcaaacatca caagctaaga gagtctaaga gagagacatg actgtaaccc agagtcagta
     1201 cacttttctc aacaggctat tcagaaaaaa tacctatttt caaatacaag ttaacccata
     1261 tttattaaat agctgtatca ctaatcttaa tgtggtctaa gttagcagag tagtcagtta
     1321 gctaactcaa catcagcact caagtatttt gaaacagcag atatttatat aaatgttagc
     1381 taactcagtt ttaaatagca atacattaaa atactataca tgacatatta aagcatcaat
     1441 gtaattatta tattgcctgt gcttcatcct cggagctttc caggtttttt ttgttttgtt
     1501 ttgttttgtt ttttctcccc agagctgggg acggaaccca gggccttgcg cttgctagga
     1561 aagcgctcta ccactgagct aaatccccaa cccccagctt tccagttttt attctgtgat
     1621 ggcaagagat actcaaatat tcatttggca acagtatcca agatgtatac tcttctagga
     1681 ataaaattgt gtagcttaat gaaatattaa tattaatctg tccacacagt tttctatact
     1741 ttctataagt aattttatgg gctgggaacg tagttcagtg gtagagagca tatgccacga
     1801 atacatgaga ctctaggttc cttcaatccc tagcagtaaa aaaatatcct ttaaatttgt
     1861 aatgtaaaag cacacacaaa aaaattgacc aaagccgggt ggtagtggca gagcatgcct
     1921 ttaattccag catttctgag gcagaggcag gaggatctct gagttcaagg acagcctgtc
     1981 ttacagagct aacttccagg gttacataga gaaaccctgt ctagaaaaaa aaatcaaagt
     2041 tttcagatct ttactcattt aaaatcaact ctgaaactgc ctgcagcggt gcgtgccttg
     2101 cagctccagc tcacaccaag ccgagaggga aggagcacag gcgttcgtgt cagcctgagc
     2161 aacatagcaa accttgtgat agtaacaact ttcacaccct gagagctggc tcagcattta
     2221 agggcactgg gtgtcctttc tgtaaatgta gattcaattt cagctcacag gtggtcatgc
     2281 acagccatct gaaactcctg ctaaaaaata ttcaactccc tcttctgacc tctgtgggca
     2341 ctgcactcaa gttatacata ggcgtacatg cagacaaagc atcatgcata ttatattttt
     2401 aaaaattaaa ctaaatgata attttccaaa ggatggaaag atttatctag aaaggtagca
     2461 ttgtatttcc ttttctctaa aaatgtaatg tctgacttca tgaagacaag gattctcaac
     2521 tgtttctgca ttatcacgta gcttatggtc tcttatgaag acagcagttt tcatttgtgg
     2581 gaataaaaaa gacatgtaac tatatgatta ggaaagacag tttgacaaag gatcatttag
     2641 gagtccttcc caaagggcca atacctggcc aaacatggga gttcacattg gaacttaaaa
     2701 agctgaggca gaaggattac catgaggtca agaccagctt gggctacaga atgagagtct
     2761 gttaaaataa agtctattcc tgcctctgtc acaagcattg tgtgtcattg agatgggtgc
     2821 caactgcact tggaatctcg agtgacacag aggtgtttag tgtaaatgca ggagttctag
     2881 gcccgagtcc accctatatg ctccacccaa gtagtttcca cacttcagct ttatcctccc
     2941 aagtttactc aggctgtccc tctttaagct aaactactcc tggcataacc tgtgccttgc
     3001 ctcccatcca cagatgaggc agggctggaa agtgaatgag gttttaggta agactcagga
     3061 ataacgggag ggagcctatg tacacaccta gatgtccttc ctttcagccc ttctgcagtc
     3121 ccgtcttaac gatgctttct tccctagctc ccagtcttcc atatgctgga ctttgtattt
     3181 tgggtggccc atggaataga gaatgacagg gagcacctcc atttgccctt atctagaaaa
     3241 tcagcaggta tacgatagaa aattaaatat ctgtccataa cgtttacaca tcactatcag
     3301 agcccttttt agcaatataa ataatttcct aacaaaaagg ggatagtaaa atcaatggtt
     3361 ttatttttca gatataagca gaaacttttg attgttaaca tgttcaggaa tctctaagga
     3421 aatgtttcat aataggccta tcctgaaacc ttcctattta catagttata actgataaat
     3481 ggttctctgt attcttatga ggagcctctc acaagaatgt ctcttgtgta tgtacaaata
     3541 aagcctccat ctctaattaa ccagaaggta cagtgggggt ttcttgtatg tagagcacat
     3601 gccagggaga tgttccagta ggaaggactg tcatcagcaa taacttgcat ttttttaaaa
     3661 ctgtgaaaat gtttgtgtaa ataatgttct caaagatttc cttaaagata atcatctgat
     3721 gaatcttttt acttgaaaat tcaaaagtcg taaagttgct aatgtgtaga ctccttattg
     3781 caggttgatt ctgagaataa actgccaagg gaagcaaaac ttaaagtgaa catctcagga
     3841 gaatacagtt tgacccagtc attgctccag aaccgtcatg gtcagttgtc ttatcttgca
     3901 gatgagatag acagagaaat actgtctgat tgacatgtca taatcggctg gttagattac
     3961 tatgcactgt caaagctaaa ataatcttcc ttcatcacga ctcattcagt acacctcatg
     4021 acgtctccat tcgttgacaa tgtagtacta tgtatttatt ttagtgcctt aatatatttt
     4081 tgatgtattt tgctaatggt aaactgaaat gtctcttaaa gataaaatgc tgttcattga
     4141 aaggatctgt taagtaattt acacttgttc tacagtagta acggtgaatg cttttgtcat
     4201 tttttaattt ggccaagtcc tgcagtttga gaatcaatga ttatttgatc taatgattat
     4261 tagatgccct ttccttaacc aatgctgttt tcatttcata ctcagaaatg tgaaaagtga
     4321 tattgtagga gctgtccaat ggttgttatt tattcttatg gcctagcatg caggcttgtt
     4381 tatagcgctg actcccttgt acttccctgc ctcagaacta accacttcag taaagagatg
     4441 ctcatcacac tgga
//
