LOCUS       NM_138853               1574 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus UBX domain protein 11 (Ubxn11), mRNA.
ACCESSION   NM_138853
VERSION     NM_138853.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1574)
  AUTHORS   Katoh,H., Harada,A., Mori,K. and Negishi,M.
  TITLE     Socius is a novel Rnd GTPase-interacting protein involved in
            disassembly of actin stress fibers
  JOURNAL   Mol Cell Biol 22 (9), 2952-2964 (2002)
   PUBMED   11940653
  REMARK    GeneRIF: Socius is a novel Rnd GTPase-interacting protein involved
            in disassembly of actin stress fibers
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC078730.1.
            
            On Aug 8, 2004 this sequence version replaced NM_138853.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC078730.1, SRR8487227.210813.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1574
                     /gene="Ubxn11"
                     /gene_synonym="Soc; Ubxd5"
                     /note="UBX domain protein 11"
                     /db_xref="GeneID:192207"
                     /db_xref="RGD:620769"
     exon            1..39
                     /gene="Ubxn11"
                     /gene_synonym="Soc; Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            40..143
                     /gene="Ubxn11"
                     /gene_synonym="Soc; Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     CDS             73..1530
                     /gene="Ubxn11"
                     /gene_synonym="Soc; Ubxd5"
                     /note="UBX domain-containing protein 5; UBX domain
                     containing 5; socius"
                     /codon_start=1
                     /product="UBX domain-containing protein 11"
                     /protein_id="NP_620208.1"
                     /db_xref="GeneID:192207"
                     /db_xref="RGD:620769"
                     /translation="MSSPLASLSKTRKVPLESEPVNPGRRGIRIYGDEDEVDMVNDGQ
                     DSEEKISLPSCYGGIGRQGLMIHDSELLTSMARKLQELEQQLKARNEEMLSKEQKILA
                     LEDLVQTLQQHQSSTTREEELETQCIQLQRQVGEMERFLNDYGLQWVGEPMDQENSEG
                     KIISESDERDWMKAKKFWKPGDSIVPPEVDFDRLLSSLQDLSELVVEGEAQVTPVPGG
                     AQFRTLEPIPLKLYRNGIMMFDGPFRPFYDPYTQRCLRDILDGFFPSELQRLYPDGVP
                     FKVSDLRNQVYPEDGLGPFPGEGRVVGRQKIRKVTDRVEETSGSRMTAEKFLNRLPKC
                     VIRQGEVIDIRGPIRDTLQNCCPMPVRIQEIIVETPALASERQRTQESPNMPVPPLSM
                     LRIKSENGEQAFLLMMRPEDTIGDVRNLLAQARDMDSAAFEILSTFPPTVYRDDTVTL
                     QAAGLVPNATLLLRTRRVLPANPSFGTDSGPGSLP"
     exon            144..172
                     /gene="Ubxn11"
                     /gene_synonym="Soc; Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            173..259
                     /gene="Ubxn11"
                     /gene_synonym="Soc; Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            260..360
                     /gene="Ubxn11"
                     /gene_synonym="Soc; Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            361..415
                     /gene="Ubxn11"
                     /gene_synonym="Soc; Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            416..486
                     /gene="Ubxn11"
                     /gene_synonym="Soc; Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            487..613
                     /gene="Ubxn11"
                     /gene_synonym="Soc; Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            614..828
                     /gene="Ubxn11"
                     /gene_synonym="Soc; Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            829..906
                     /gene="Ubxn11"
                     /gene_synonym="Soc; Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            907..1027
                     /gene="Ubxn11"
                     /gene_synonym="Soc; Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1028..1131
                     /gene="Ubxn11"
                     /gene_synonym="Soc; Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1132..1205
                     /gene="Ubxn11"
                     /gene_synonym="Soc; Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1206..1346
                     /gene="Ubxn11"
                     /gene_synonym="Soc; Ubxd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1347..1548
                     /gene="Ubxn11"
                     /gene_synonym="Soc; Ubxd5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caagatggcg gcgccgcggg acggctcgct ggccccgtgg agtccctgac agtgaacccc
       61 aacactggag ctatgagctc acccctggcc tctcttagca agactcggaa ggtgccctta
      121 gagtcggagc ctgtgaatcc cgggaggcga gggataagaa tctacggaga tgaagatgag
      181 gtggacatgg tgaatgacgg acaggactca gaagagaaga tctctctccc ttcctgctat
      241 ggaggcattg gtaggcaagg ccttatgatc catgactcgg agttgctgac ctccatggcc
      301 aggaagctgc aggagctgga gcagcagttg aaggcacgga atgaggagat gctgtccaag
      361 gagcagaaga tcctggccct ggaggatttg gtgcagaccc tccagcagca ccagagcagc
      421 acaaccaggg aggaggagct ggagacacag tgcattcagc tgcaacggca ggttggagag
      481 atggagcggt tcctcaatga ctatggcctg cagtgggtgg gcgagcccat ggaccaggag
      541 aactcagagg gaaagataat ctctgaaagt gatgagcgag actggatgaa ggccaagaag
      601 ttctggaagc caggggattc cattgtgccc cccgaggtgg acttcgacag actgctgtcc
      661 agtctacagg atctgagtga gctggtggtg gagggagagg cccaggtgac accagtacct
      721 ggtggggctc agttccgtac tctagagccc atcccgctga agctctaccg gaatggaatc
      781 atgatgttcg atggaccctt ccggcccttc tacgatccct acacgcagcg ctgcctccgg
      841 gacatactgg atggcttctt tccctcagag ctgcagcggc tgtatcctga tggagtcccc
      901 tttaaggtaa gcgacctgcg aaatcaggtc tacccagagg acgggctggg cccattccca
      961 ggtgagggtc gtgtggtggg ccggcagaaa atacgcaagg tcacagacag ggtggaggag
     1021 acttcaggct ccaggatgac tgctgagaaa tttctgaaca ggcttcccaa gtgtgtaatc
     1081 cgacaaggcg aggtgattga catccggggc cccatcaggg acaccttgca gaactgctgc
     1141 ccaatgcctg tccggatcca ggagatcata gtggagacac ctgccttggc ctctgagcgg
     1201 cagaggaccc aggagtcgcc taacatgcca gtgcctccac tctccatgct gcgcatcaag
     1261 tccgagaatg gggaacaggc cttcctgtta atgatgcggc ctgaggacac cattggtgac
     1321 gtgcgaaacc tcttagcaca ggccagggac atggattcag ctgcctttga aatcttgagc
     1381 accttcccac ccacagtcta ccgggatgac acagtgactc tgcaggccgc aggcctggtt
     1441 cccaatgcaa cactgctctt acggactcgc agggttctgc cagcgaaccc cagctttggg
     1501 actgattctg gcccgggctc actgccctga ataaagtggc gcccctgaaa aaaaaaaaaa
     1561 aaaaaaaaaa aaaa
//
