LOCUS       XM_006247264            4002 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus upstream binding transcription factor
            (Ubtf), transcript variant X2, mRNA.
ACCESSION   XM_006247264
VERSION     XM_006247264.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006247264.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006247264.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4002
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4002
                     /gene="Ubtf"
                     /gene_synonym="Tcfubf"
                     /note="upstream binding transcription factor; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 36 ESTs, 2 long SRA reads, 10 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 203 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:25574"
                     /db_xref="RGD:3927"
     CDS             1081..3375
                     /gene="Ubtf"
                     /gene_synonym="Tcfubf"
                     /codon_start=1
                     /product="nucleolar transcription factor 1 isoform X1"
                     /protein_id="XP_006247326.1"
                     /db_xref="GeneID:25574"
                     /db_xref="RGD:3927"
                     /translation="MNGEADCPTDLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSS
                     KFKTTESHMDWEKVAFKDFSGDMCKLKWVEISNEVRKFRTLTELILDAQEHVKNPYKG
                     KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMK
                     YIQDFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKVYLKVR
                     PDATTKEVKDSLGKQWSQLSDKKRLKWIHKALEQRKEYEEIMRDYIQKHPELNISEEG
                     ITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMKDVPSTERMVLCSQQWKL
                     LSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQTTSPAS
                     KKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSE
                     KKKAKYKAREAALKAQSERKPGGEREDRGKLPESPKRAEEIWQQSVIGDYLARFKNDR
                     VKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGE
                     PKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQR
                     QYKVHLDLWVKSLSPQDRAAYKEYISNKRKNMTKLRGPNPKSSRTTLQSKSESEEDDD
                     EEDDDDDDEEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEDDDDDEDDDEDDDED
                     EDNESEGSSSSSSSSGDSSDSDSN"
ORIGIN      
        1 gcgtgacgcc ggtaacaaca aaggtggagt tggaagaaat tagattaaag gaaaggagaa
       61 aaaaaaaaat taaaggggga gctagcaggc gactggaagc agagaccgag gggagacgca
      121 ggaagctccg ttcccggttc gacttccccc ttccagttct ttcgcacaag cgctgcgggg
      181 ttttcctcta aacccccacc ccggccgcgg cctagttgca gaagcccggg gtagaaggga
      241 tgaccgctcc gctgcgtctt gaaaaatctc cccaactcct actgacaccc tactacaacc
      301 caggggcgaa ctttttgctc ttaactcctc ggatccttcg gccagtgaag atgggggctg
      361 gcatcgagaa caaccaaaga ctcgctctga aatccggaag gccctcgccc ggcaccaaac
      421 gaggcggggt gctcccccgg tctttccata tgttgcaaac ctaagagcct ctttattttt
      481 tctttttcgt ttttgtaaca tcccccttcg cccccacccc gctttagctt cagggttgca
      541 aaagcaaagc aataaaaaaa aaaaaaaaaa aaaaaacctg cgcacacact cagacacaca
      601 ccagtggcga caggggagag ttggaaaaac gcaggaggag gaggaggagg caggagacag
      661 ccgggatgaa gcaatgggag cgggagcagg caggatccct tacagatccc cctccggcct
      721 caagctgcct tgcccgcccc ggcaggagag cgaggagtcg ggcgagcaga tggagcggag
      781 ctcgctctag gcagctggct tggccggaga ctggaggagc cgccaagcga ccggctgatt
      841 ggagagaaac gcagagcgat ggaggcgggg gtaggaggac gatttctctg cggggactgg
      901 cggcggcgta cacgcccggg tcgggcgctg cagagcttgg ctagctttca acccgcgctc
      961 ggcggctcca gccccgcgca cccccgcccc cagccctgcc ggcggccccg cagggtgagg
     1021 tggctttgac cccgggttgc ccggccagcg cgaccgagga ggtggctgga cagctggaga
     1081 atgaacggag aagccgactg tcccacagac ctggaaatgg ccgcccccaa aggccaagac
     1141 cgctggtccc aggaagatat gctaactttg ctggaatgca tgaagaacaa ccttccatcc
     1201 aatgacagct ccaagttcaa gaccacagag tcgcatatgg actgggaaaa agtcgcattt
     1261 aaggattttt caggagatat gtgcaagctc aaatgggtgg agatttctaa cgaggtaagg
     1321 aagttccgta ctttgacaga attgatcctt gatgctcagg aacatgttaa aaacccttac
     1381 aaaggcaaaa aactcaagaa acacccggat tttccaaaga aacctctcac cccctacttc
     1441 cgcttcttca tggagaagcg ggccaagtac gcgaaactcc accctgagat gagcaacctg
     1501 gacttgacta agatcctgtc taagaaatac aaggagcttc cagagaagaa gaagatgaaa
     1561 tatattcagg acttccagag ggagaaacag gagttcgagc gaaacctggc ccgattcagg
     1621 gaggatcacc ctgaccttat ccagaatgcc aagaagtcgg acatccccga gaagcccaaa
     1681 actccccagc aactgtggta cacccatgag aagaaggtgt atctcaaagt gcggccggat
     1741 gccactacga aggaggtgaa ggactccctg gggaagcagt ggtctcagct ctcggacaaa
     1801 aagaggctga aatggattca taaggccctg gagcagcgga aggagtacga ggagattatg
     1861 cgtgattata tccagaagca ccctgagcta aacatcagcg aggaaggtat caccaagtct
     1921 accctcacta aggccgaacg ccagctcaag gacaaatttg atggacgacc caccaagcca
     1981 cctccgaaca gctactccct gtactgtgca gagctcatgg caaacatgaa ggatgtgccc
     2041 agcacagagc gcatggtgct atgcagccag cagtggaagc tgctctccca gaaggaaaag
     2101 gatgcttatc acaagaagtg tgaccagaaa aagaaagatt atgaagtgga gctgctgcgg
     2161 ttccttgaga gcttgccaga ggaagagcag cagcgggtcc tgggagagga gaagatgttg
     2221 aacatcaata agaagcagac caccagtcca gcctccaaga agccttcaca ggaaggtggc
     2281 aaaggtggtt cggagaagcc caagcggcct gtgtctgcca tgttcatctt ctcagaggag
     2341 aagagaaggc agcttcagga ggaacgacct gagctctcag aaagtgagct gacccgcctg
     2401 ctggcccgca tgtggaacga cttgtccgag aagaagaagg ctaaatataa ggcccgggag
     2461 gccgcgctga aggcacagtc cgagaggaag cctggcggag agcgtgaaga taggggcaag
     2521 ttgccagagt cgcccaagag agctgaggag atctggcagc agagtgtcat cggagactat
     2581 ctggcccgct ttaagaatga ccgggtgaaa gccttgaaag ccatggagat gacgtggaac
     2641 aacatggaga agaaggagaa gctcatgtgg attaagaagg ctgcagaaga ccaaaaacga
     2701 tatgagagag agttaagtga gatgcgggcc cctccagctg ctacgaactc ttccaagaag
     2761 atgaagttcc agggagagcc caagaaaccg cctatgaacg gttaccagaa gttctcccag
     2821 gagctgctgt ccaatgggga actaaatcac ctgccactca aggagcgcat ggtggagatc
     2881 ggcagccgtt ggcagcgcat ctcccagagc cagaaggagc actataagaa gctggctgag
     2941 gaacagcaga ggcagtacaa ggtgcacttg gacctctggg tcaagagcct atctccccag
     3001 gaccgcgcag catacaaaga atacatctcc aataaacgta agaacatgac taagcttcga
     3061 ggcccaaacc ccaagtctag ccggaccacc ctgcagtcca agtcggagtc agaggaagac
     3121 gacgatgagg aagatgatga tgatgatgac gaggaggaag aggaagatga tgagaacggc
     3181 gactcgtccg aggacggtgg ggattcttct gagtcgagca gtgaagatga aagcgaggac
     3241 ggggatgaga atgaggatga tgacgacgac gaggatgacg acgaggatga cgatgaggat
     3301 gaagacaacg agtctgaggg cagtagctcc agctcctcat cttcagggga ctcctcagat
     3361 tctgactcca attgaggctc cgcctccacc ccaggcaggc gggcaggcag gcagccaagg
     3421 agagccgctg cagagcttac ctccccaact gaccaccttt gtctccccct atgttctgtc
     3481 ccctgtcccc cccagactcc cccactttct ttctttcctt taaaaaaaaa attcagtggg
     3541 gtaggaggct gcgtgagccc aggctaggac tctgcagcct tggagcgtca gctgcagagg
     3601 ttctccaggg acaacaacca tcagactgag ccagcactgg accggcccgc cccgcccctc
     3661 ttctgcactt gcagttccgg catggacagt ggaccggaga gtttgggggt gggagcgtgt
     3721 tctaaagagt ttggtgaggc cctccgagtc tgcagcctgc cgcaaggtgg atgttcaggg
     3781 gggccttccc agacgggctt gccacctgga cccccacatt gaaccggagg gggagaaagg
     3841 tgctgccttc gagaaagcag gcagcgtccg tgtccctctt ccctgcccct gcaggaagga
     3901 gctgccagga cccgttcgtg ggggaggggc agagtgtttt ttatatatgt gtatatattt
     3961 ttttttaagc tctgagctgt caacgagacg tttcctaccg at
//
