LOCUS       NM_001013153            1938 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus ubiquitin domain containing 1 (Ubtd1), mRNA.
ACCESSION   NM_001013153 XM_347200
VERSION     NM_001013153.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1938)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 1938)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079260.1.
            
            On Mar 26, 2005 this sequence version replaced XM_347200.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079260.1, CO562593.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1938
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q54"
     gene            1..1938
                     /gene="Ubtd1"
                     /note="ubiquitin domain containing 1"
                     /db_xref="GeneID:309373"
                     /db_xref="RGD:1308172"
     exon            1..571
                     /gene="Ubtd1"
                     /inference="alignment:Splign:2.1.0"
     CDS             502..1185
                     /gene="Ubtd1"
                     /codon_start=1
                     /product="ubiquitin domain-containing protein 1"
                     /protein_id="NP_001013171.1"
                     /db_xref="GeneID:309373"
                     /db_xref="RGD:1308172"
                     /translation="MGNCVGRQRRERPAAPGHPRKRAGRNEPLKKERLKWKSDYPMTD
                     GQLRSKRDEFWDTAPAFEGRKEIWDALKAAAYAAEANDHELAQAILDGASITLPHGTL
                     CECYDELGNRYQLPIYCLSPPVNLLLEHTEEESLEPPEPTPSVRREFPLKVRLSTGKD
                     VRLSASLPDTVGQLKRQLHSQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKDFVIQVI
                     INQPPPPQD"
     exon            572..799
                     /gene="Ubtd1"
                     /inference="alignment:Splign:2.1.0"
     exon            800..1854
                     /gene="Ubtd1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggggcggtac gcaccctagg agaagccaat gagaaaacca ggcccggccc gaggggcggt
       61 gccgtcggtc acatgcgcac ctggggcggc tggcggccgt ggcgcgggca ccccgagcgg
      121 gaggaaggga gcggggccgg gccggggcgg ggttaggcag gtgagtgaca ggctccgggg
      181 ggccggcccc agctgggagc tccgagtgat cccggagtag ctgcgacggt gtccgccccc
      241 tccctccgcc cctccagccg ggctggtctc tggccgggca ctgtcgcggg cccccctggc
      301 ctggccacct ccttctcccc tggcccgcaa agtttgtggc gaagccggcg tcgggcagag
      361 tgcgccccag gggagatcca ggagctcccg atgccgggct gcgggagcca ttgactcggg
      421 gacgccgcgg ttcgggacag cagcgtggag cagcctgccg accgccgcct ctggtgcatg
      481 gggaccggct gagaagccag catgggcaac tgcgtgggga gacagcgccg ggagaggccg
      541 gctgctccgg gacacccccg caagcgagca ggtcgcaatg agcccttgaa gaaggagcgg
      601 ctcaagtgga agagtgacta ccccatgact gatgggcagc tgcggagcaa gcgagatgag
      661 ttctgggaca cagcgcctgc cttcgagggt cgcaaggaga tctgggatgc cctcaaggct
      721 gctgcctatg ctgctgaagc caacgaccat gagctggctc aggccatcct ggatggagcc
      781 agcatcaccc tgcctcatgg aactctttgt gaatgctatg acgagctggg caatcgctat
      841 caactgccca tctattgcct gtcaccgcct gtgaacctgc tgctggagca cacagaggag
      901 gagagcctgg agcctcctga gcccacccct agtgtgcgcc gtgaattccc actgaaagtg
      961 cgcctctcca caggcaagga cgtgaggctc agtgccagcc tgcctgacac agtggggcag
     1021 ctcaagaggc agctgcacag ccaggagggc attgagccat cctggcagag atggttcttc
     1081 tctgggaagc tgctcacaga ccgcacaagg ctccaggaga ccaagattca aaaagacttt
     1141 gtcatccagg tcatcattaa ccagccccca ccaccccagg actgaaggca tctgactcct
     1201 ggggaaagag gccatggagg tcccctgcag gctgtggggc ccaggcctgt tgctgccttc
     1261 cagtgctgct gtcttcaggg tcgcctcccg ccaccctgcc gtatggctct cagtgagctg
     1321 ggaagggact ggccttccag ggcactggat caaccagtgc tcagcaccca gggagcagtg
     1381 ctgcctgcca cacacaggcc ttgccaacct tgtcggagaa aaggcacgtg gcactctccg
     1441 ccacaggttg gaaccatggg ggccgtcctg cagacctgga acccagatct gtcatctggt
     1501 gccaccactg tgctcactcc agttttctgc tcagggtcgg aagcaattgc tgtctccccc
     1561 tttatccctc accataactc tgccctgggc acagtaccag tcccctggat ggggagggag
     1621 cccagtgtgc cccagggctt gaggagcttg aggtgggcct ctctgtctct tcctgcaccc
     1681 agcacaatct gcagagatga ggcaggtggc cagataggct ttatggcaga ggtttgcaca
     1741 gggctatctc caactgtaac ccaggcaggg tgggtcggaa gcctggccat ggccccagct
     1801 gggccctgtg tacacacaca tctgcatttt atcaataaag cctttgctcc tcttaaaaaa
     1861 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1921 aaaaaaaaaa aaaaaaaa
//
