LOCUS       XM_039104850            8831 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin protein ligase E3 component
            n-recognin 3 (Ubr3), transcript variant X4, mRNA.
ACCESSION   XM_039104850
VERSION     XM_039104850.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104850.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8831
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8831
                     /gene="Ubr3"
                     /gene_synonym="RGD1565257"
                     /note="ubiquitin protein ligase E3 component n-recognin 3;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 77 ESTs, 2 long SRA reads, 2
                     Proteins, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments, including 194 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:311115"
                     /db_xref="RGD:1565257"
     CDS             321..5981
                     /gene="Ubr3"
                     /gene_synonym="RGD1565257"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase UBR3 isoform X4"
                     /protein_id="XP_038960778.1"
                     /db_xref="GeneID:311115"
                     /db_xref="RGD:1565257"
                     /translation="MAAAAAAAVGGPQPPQPEVSAQGPTLDKAATAAHLKAALSRPDN
                     RAGAEELQALLERVLNAERPLARAAGGEEAAGGGSPGEAEEDALEWCKCLLAGGGGYD
                     EFCAAVRAYDPAALCGLVWTANFVAYRCRTCGISPCMSLCAECFHQGDHTGHDFNMFR
                     SQAGGACDCGDSNVMRESGFCRRHQIKSSSNIPCVPKDLLMMSEFVLPRFIFCLIQYL
                     REGYNEPAADTPSEKDLNKVLQLLEPQISFLEDLTKTGGAMRAVLTQVLTNQQSYKDL
                     TAGLGENTCAKKSHEKYLIALKSSGLTYPEDKLVYGIQEPSAGTSTLAAQGFAGATGT
                     LGQIDSSDEEDQDGSQGLGKRKRVKLSSGTKDQSIMDVLKHKSFLEELLFWTIKYEFP
                     QKMVTFLLNMLPDQEYKVAFTKTFVQHYAFIMKTLKKSHESDTMSNRIVHISVQLFSN
                     EELARQVTEECQLLDIMVTVLLYMMESCLIKSELQDEENSLHVVVNCGEALLKNNTYW
                     PLVSDFINILSHQSVAKRFLEDHGLLVTWMNFVSFFQGMNLNKRELNEHVEFESQTYY
                     AAFAAELEACAQPMWGLLSHCKVRETQEYTRNVVRYCLEALQDWFDAINFVDEPAPNQ
                     VTFHLPLHRYYAMFLSKAVKCQELDLDSLLPDQEMLMKLMIHPLQIQASLAEIHSNMW
                     VRNGLQIKGQAMTYVQSHFCNSMIDPDIYLLQVCASRLDPDYFISSVFERFKVVDLLT
                     MASQHHNMVLDVEHERSMLEGALTFLVILLSLRLHLGMSDDEILRAEMVAQLCMNDRT
                     HSSLLDLIPENPNPKSGIIPGSYSFESVLSAVADFKAPVFEPGGSMQQGMYTPKAEVW
                     DQEFDPVMVILRTVYRRDVQSAMDRYTAFLKQSGKFSGNPWPPYKKRTSLHPSYKGLM
                     RLLHCKTLHIVLFTLLYKILMDHQNLSEHVLCMVLYLIELGLEDSAEDDSEEEVSMGG
                     PERCHDSWFPGSNLVSNMRHFINYVRVRVPETAPELKRDSLASTSSDGLGSLQNSGTA
                     QVFSLVAERRKKFQEIINRNNSEANQVVRPKTPSKWSAPGSAPQLTTAILEIKESILS
                     LLIKLHHKLSGKQNSYYPPWLDDIEVLIQPEIPKYSHGDGITAVERILLKAAVQSRMN
                     KRIIEEICRKVTPPVPPKKITTAEKKTLDKEERRQKARERQQKLLAEFASRQKSFMET
                     AMDVDSPENDIPMEITTAEPQVSEAVYDCVICGQSGPSSEDRPTGLVVLLQASSVLGQ
                     CRDNVEPKKLPITEEEQIYPWDTCAAVHDVRLSLLQRYFKDSSCLLAVSIGWEGGVYV
                     QTCGHTLHIDCHKSYMESLRNDQVLQGFSVDKGEFTCPLCRQFANSVLPCYPGSNVEN
                     NLWQRPSNKSTQDLIKEVEELQGRPGAFPSETNLSKEMESVMKDIKNTTQKKYRDYSK
                     TPGSPDNDFLFMYSVARTNLELELIHRGGSLCSGGASTAGKRSCLNQLFHVLALHMRL
                     YTIDSEYNPWKKLTHLVEDMNSQVGSEDQQPEVPVLYHDVTSLLLIQILMMPQPLQKE
                     HFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHLGALKKDTCDAEKSYEVLLGFVI
                     SELSKGKLYCEEGAQECTMVSPIAWSPESMERYIQDFCLPFLRISSLLQHHLFGEDLP
                     SCQEEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAFDIITQWCFEIRSFTERH
                     AEQGKALLIQESRWKLPHLLQLPENYNTIFQYYHRKTCSVCTKVPKDPAVCLVCGAFV
                     CLKGLCCKQQSYCECVLHSQNCGAGTGIFLLINASVIIIIRGHRFCLWGSVYLDAHGE
                     EDRDLRRGKPLYICEERYRVLEQQWVSHTFDHINKRWGPHYNGL"
ORIGIN      
        1 tgcagaaaag ccgcttttat taaaggttgc cttggcgctg agttcttgtg taaggagttg
       61 tcagttttga aagttgggag ccaacaggta gagagggatc acaggagcag tacccgggct
      121 cggtggaggc gatgaccggg gagcccgacg aggggcgggg ctcggccgga gggcgtgagc
      181 aggggcgggg accgcgcaga agtgctctgc ggcgcccggt atcgcgagag ttgggcgggc
      241 gagccatcgc agcagtcaat tcccccaccc tcccgggagg agccgggggc cctggactct
      301 ccaaattctg agctctcatc atggcggcgg cggccgcggc ggccgtcggg ggcccgcagc
      361 caccccagcc ggaggtgtcc gcgcaggggc cgaccttaga caaggcggct accgccgcgc
      421 acctgaaggc cgctctcagc cggccggata accgtgcggg cgccgaggag ctgcaggcgc
      481 tgctggagcg ggtgctgaac gcagagcggc cgctggcccg ggctgcgggc ggcgaggagg
      541 cggcgggcgg cggcagccca ggcgaggccg aggaggatgc cctggagtgg tgtaagtgcc
      601 ttctggccgg cggcggcggc tacgatgagt tctgcgcggc cgtgcgggcc tacgaccccg
      661 cggcgctctg cggcctggtc tggacggcca acttcgtggc ctaccgctgc cggacgtgcg
      721 gcatctcccc ctgcatgtcg ctgtgcgcgg agtgcttcca ccagggcgac cacactggac
      781 acgacttcaa catgttccgc agccaggccg gaggcgcctg cgactgcggg gacagcaacg
      841 taatgcggga gagtgggttt tgcagaagac atcagattaa atcaagttct aatattccct
      901 gtgtccccaa agacttactg atgatgtctg aatttgttct tccaagattc attttttgtc
      961 ttattcagta cttaagagaa ggctataatg aaccagcagc tgatacacca tcagaaaaag
     1021 atctgaacaa agtccttcag cttttggagc ctcagatttc ctttttagaa gacctgacta
     1081 aaacgggagg agcaatgagg gctgttctca ctcaggtgct gacaaaccag cagagctaca
     1141 aagacctgac tgctggtctt ggagaaaata cttgtgcaaa gaagagtcat gagaagtacc
     1201 ttatagcttt gaagagctcc ggactcacgt atcctgagga taagcttgtg tacgggatac
     1261 aggagccgtc tgctggcact agcactctgg cagctcaagg ctttgcaggt gctactggga
     1321 cactgggtca gatagactct tcagatgagg aggaccaaga cgggagtcaa ggcttgggca
     1381 agaggaagcg ggtaaagcta agcagtggca ccaaagatca atccataatg gatgttttga
     1441 aacataaaag ttttttagaa gaactattgt tttggacaat aaagtatgaa ttcccccaga
     1501 agatggtaac tttcttactc aatatgcttc cagatcaaga gtataaggtt gcttttacaa
     1561 aaacttttgt tcagcattat gcatttatta tgaaaacact gaagaaaagt cacgagtcag
     1621 acacgatgtc caacagaatt gtgcatatta gtgtccagtt gttcagcaat gaggagctag
     1681 ccagacaggt gacagaggag tgtcagctcc tggacatcat ggtcaccgtg ctgctgtaca
     1741 tgatggagag ctgcctcatc aaaagtgagc tgcaagatga agagaacagt ttacatgtgg
     1801 tggtgaactg tggagaagcc ttactgaaga ataacaccta ctggcctctt gttagtgact
     1861 ttattaatat tctttctcac caaagtgtgg cgaagaggtt tttggaggat catggcttgt
     1921 tagttacgtg gatgaacttt gtttctttct ttcaaggtat gaacttgaac aagcgagagc
     1981 tcaatgaaca cgtggagttt gagtctcaaa cttactatgc tgcctttgct gctgagcttg
     2041 aagcctgtgc acaacccatg tgggggcttt tatcacattg caaagtcagg gaaactcaag
     2101 agtatacccg aaatgttgta aggtactgcc ttgaagctct tcaagattgg tttgatgcta
     2161 ttaactttgt agatgagcca gctcctaacc aagtcacttt ccacctgcca ctgcaccgtt
     2221 actatgctat gtttttgagt aaggctgtga aatgtcaaga actagatttg gattcacttt
     2281 taccggatca ggaaatgtta atgaaactaa tgatccaccc actccaaatt caagctagtc
     2341 ttgctgaaat tcacagtaac atgtgggtaa gaaatggtct gcaaatcaaa ggacaagcta
     2401 tgacctatgt ccagtctcat ttctgtaact ccatgattga tccagatatt tacttattac
     2461 aggtctgtgc ttctagactt gacccagatt actttatatc atctgtcttt gaaaggttta
     2521 aggtggtgga cttactgacc atggcttccc agcaccacaa catggtgctc gatgtggagc
     2581 acgagcggtc aatgctagag ggcgcgctca ccttcctcgt gattcttttg agtcttcgtt
     2641 tacacctagg gatgtctgat gatgagattc tcagggcaga gatggtagcc cagctgtgta
     2701 tgaatgacag gacgcatagc tctttgcttg acctcatccc agaaaatccc aaccctaaaa
     2761 gtggcattat tcctggaagc tatagctttg aatcagtttt atctgctgta gctgacttta
     2821 aggctcccgt ttttgaacct ggaggctcca tgcaacaagg catgtatact cccaaagctg
     2881 aagtctggga tcaggagttt gatcctgtca tggtcattct tcgaacagtt tatcgccgag
     2941 atgtgcagtc tgccatggac agatacacag catttttaaa acagagtgga aaattttctg
     3001 gaaatccctg gcctccttat aagaaaagaa catcactcca tcccagttat aaaggtctca
     3061 tgagacttct gcattgtaaa accttacaca ttgtgctgtt cactctgctt tacaagattc
     3121 tgatggatca tcaaaatctg tctgaacacg tgctctgcat ggtgttgtat ctgattgaat
     3181 taggcctgga agactctgct gaggacgact ctgaggaaga ggtatcaatg ggtggaccag
     3241 aacgttgtca tgatagttgg ttccctggca gtaacttggt atcaaacatg cggcacttta
     3301 taaattatgt cagagtgcga gtcccagaga ctgctcctga gttgaaaagg gattccctcg
     3361 ccagcacgag ctctgatggc ttgggctctt tacaaaattc tggtacagct caagttttca
     3421 gcttagtagc agagcgtaga aagaaatttc aggagatcat caatcgaaac aacagtgaag
     3481 caaatcaggt ggttcggccc aagactccaa gtaaatggtc agctcctggc tcagctcccc
     3541 agttaaccac agccattttg gaaattaagg aaagcatatt gtctttgcta ataaaacttc
     3601 accacaaact ctcaggaaaa caaaactctt actatcctcc atggcttgat gacatagaag
     3661 ttttaataca accagaaatt ccaaaataca gtcatggaga cggtataact gctgtagaaa
     3721 ggattttgct aaaagctgca gtgcaaagca gaatgaacaa gcgcatcatt gaagagatat
     3781 gcagaaaagt gactcctccc gtgccaccca aaaagatcac cacagcagag aagaagactc
     3841 tggacaagga ggaaaggcgc caaaaggcta gagaaaggca gcagaaattg cttgcagagt
     3901 ttgcctcacg acagaaaagc tttatggaga ctgcaatgga tgtcgattct cctgaaaacg
     3961 atattcctat ggaaattacc acagcagaac ctcaagtttc tgaagctgtg tatgactgtg
     4021 ttatttgtgg acagagtggt ccttcttctg aagacagacc tacaggactg gttgtactgt
     4081 tacaagcatc atcagtttta ggtcagtgcc gggacaatgt tgagccaaaa aagttgccta
     4141 tcactgaaga ggaacagatt tacccttggg acacatgtgc agccgttcac gatgtgaggc
     4201 tttcattact gcaacgttat tttaaagata gttcttgcct tttggcagta tcaattggct
     4261 gggaaggagg tgtttatgta caaacttgtg gccacacgtt gcacatagat tgtcataagt
     4321 cctatatgga atcattacgg aatgaccagg ttcttcaggg cttctcagtg gacaaaggag
     4381 aattcacatg tccactctgc agacagtttg ctaacagcgt tcttccatgt tatcctggaa
     4441 gcaatgtgga aaataacctt tggcaacgtc ctagtaacaa aagcacacaa gatctcataa
     4501 aggaagtgga ggagctgcag ggacggccgg gagctttccc atcagaaacc aacctaagta
     4561 aagaaatgga gtctgtaatg aaagatataa aaaacaccac tcagaagaaa tacagagact
     4621 atagcaagac cccaggctcg ccagacaatg actttctctt tatgtactct gttgctagaa
     4681 ccaatttaga gctggagctg attcacagag gaggcagcct gtgctcaggc ggtgcaagca
     4741 cggctgggaa gaggtcttgt ttgaatcagc tgttccatgt attagccttg cacatgcggc
     4801 tttataccat tgactctgag tataatccat ggaaaaaact cacccactta gtggaagata
     4861 tgaattcaca ggtggggagt gaagaccagc agcctgaagt tccagtcctt tatcatgatg
     4921 tgacatcgct cctgctcatc cagatcttaa tgatgccaca gcccttacag aaagagcact
     4981 tcacctgcat tgtcaaagtt ctcttcaccc tgctctacac ccaggccctg gcagcgctct
     5041 cagtgaaggg cactgaagag gatcggtcag cctggaaaca ccttggagct cttaaaaagg
     5101 atacatgtga tgcagagaag tcttacgaag tattgttggg ctttgtcata agtgagctgt
     5161 ctaaagggaa gttatattgt gaagaaggcg ctcaggagtg taccatggtc agtcctattg
     5221 cttggtctcc tgagtccatg gaaagataca tacaggattt ctgcttacct ttcctcagga
     5281 tcagcagcct tcttcagcac cacctctttg gggaagattt acccagttgc caggaagaag
     5341 aggaattttc agtccttgcc agctgcctgg gacttctgcc aactttttac caaacagatc
     5401 acccattcat cagtgcctcg tgtctggact ggccagttgc agcatttgac attataactc
     5461 agtggtgttt tgagataaga tcatttacag agaggcatgc agaacaaggg aaggctttgc
     5521 taatccaaga gtcaagatgg aaattaccac acctgttaca gctgcccgag aattacaaca
     5581 ctatttttca gtactaccac agaaaaacct gcagtgtctg caccaaggtt cctaaagacc
     5641 cagctgtttg tcttgtgtgt ggcgccttcg tctgcctgaa aggcctgtgc tgcaagcagc
     5701 agagctactg tgaatgtgtg ctgcattctc agaattgtgg tgccggaaca gggattttcc
     5761 ttttaatcaa tgcgtcagtg attatcatca tccgaggcca ccgcttctgc ctctggggct
     5821 ctgtctatct ggatgctcat ggagaagagg accgggacct caggcggggc aagcctctct
     5881 acatctgcga ggagcggtac cgagttctcg agcagcagtg ggtttcccac acttttgacc
     5941 acatcaataa aagatggggt ccacattaca atgggctgtg acacacacct cagcatcgca
     6001 catattatca ttttcactga gattgacttt catcaactat aagctttaat ttaatttggg
     6061 ggattgatgt ctttgctgag agataaaaag taaacatcca ttatgaagcc ttcccaaagt
     6121 taggtgcttg gcaaccacat caatggtctg atattcttct aaaggatctc agcaacagta
     6181 acttagatca tcctgcagtg gtcactttta agtgcacaat taataaaaag cacaacttgt
     6241 ccacagaaat cattcagaaa tgattttccc tgcaatgccc ttagcggttg ttcactgaca
     6301 gagaggatgt gatttatttg aggttttact gctctttttg tgtttttatt tgcatctgct
     6361 aaacacaatg catcatttcc tttgtcatcc ttgtgttgat ttgagatttt tgctgtatgt
     6421 aattagaaac aaatgtaaaa catgatttat gtgaaatatt gtatagtaaa acttggtcta
     6481 atagtagaac tttaaatttt tttcttattg tgaggaatct gttaaaagtt taaggctttg
     6541 ctgaaaactt aattcattct caggaatttc ataaatgctt tccccgggta aataatttaa
     6601 ctagctgtaa aatatagtgc agtgtagtgc agcgcacaag gcggggcaag gtgtatgtgt
     6661 ggtcgggggg tccttaaaaa taaacatttg tgggctgagg gtgtagctca gtggcagaat
     6721 gcttacttgg ctaacatgta tagaacccga gtttcatctt aagcaccaca cacgcacaca
     6781 cacaaaatca acttgccatt tcaactgaat gaattattag agttgttagt gacgagcaga
     6841 tgttacaata aaatcaaagg gttaagaaca tatacatggc agagttttga ttctgtgcat
     6901 gcccaccttt tattaccaac caagccttta tttatatgat cagatcgaaa agctcatttg
     6961 tcccaacaca tgaactttaa gttctggaac tcccctgact gactgaagaa gctcatctgt
     7021 gttacagtcc tgcagggtca cagttcacgg ctgcttctgt gtgctttcct ccggcagaaa
     7081 aggctcagag gtcttgaccc tgacaaagag ccatgcttct gctttagaca tggctgtgaa
     7141 ggtcagcttg tgtgtggggg tttaattcag aatgggaatg agtgggctca aatcctctga
     7201 gtaagagggg aagaagaaca tattttattg gtaccaggat ttttccaggt gattatttca
     7261 cccatagtac ttactatcaa gcaattcctg gtacttttga tttccaaggc ttattacata
     7321 aaattacatt ttttacttgt gaaagtaaga aatattgaat aagaaaatat caaagtaaca
     7381 tcagacccat gttccaaaat gttttgaatt gacacagcat tacagaatat gaaattaacg
     7441 taaaacagtg gctttgcatt aaaatacagg aaacagagaa ggacacacac agatgtcttc
     7501 agaatgtcag aagactgcct gaggcatttt aagaaaatat gtgggaatag cttgctattt
     7561 ttatatacat ttccaaatgg tgagataact ttgttaagac aagaatgact tgttcaggta
     7621 aatccctgtc cttcctacac ctgctcctta aaacgctgtg ctacgagctc agcctgctac
     7681 ctttttgctt tggtcattat aaatagcaga ccattcgtaa gtgtggttga agagcaaatg
     7741 ctaactacat ctctagtaaa tactgttaca ggactcatga acttgagcaa ttttacagtt
     7801 tggaactctg atgctatata tacatggtat aatgtattca gactttgatc actacatatt
     7861 taaatggaat gtttatggtg ttgcatatgg atgtgaagtg aaaatattag ccttaacttt
     7921 aaaatttgga tatttgatag tgtttatttt gatattggtg aattagtcac cagtaaattt
     7981 taaaaaagca cttggttgaa attgtacttg aaaacgtaca tgcatgctgc taaattagag
     8041 cctccatttc ccctaacttt tataagtccc atttataaac ccacttttaa aataacaggt
     8101 ccaagttaga gtgatgtgtg tatattattc aaaaacatgt actggtgtga tcttgtatga
     8161 atgatcattt aaatacagta cattactgta gaagtgaaat caacctttat aattaagcag
     8221 aaattacaaa actaggaata attgacattg taagatatgt taataaaacc tactgtcatt
     8281 tgctttgtgc aagatcctta aaatgttgaa tgtttatgtt ttcttttcca atgatgtgac
     8341 acaggagagg gatggcataa ttaggacctg cctttcactg tgctctcttg cttcctgcag
     8401 gaccaggtcc tgcttgtttt ctgtggtctc ttgatcgcac ttttgctaag agtaagtgtt
     8461 tgtgctgaga gcagaagcat gatgctggcc tggtccctgc ctgctatctg ctgagagttc
     8521 ccatctaggc ctggaaactg cttcctaagg gcatttgtct tgagtggtct gtggtcttac
     8581 atgaactcac cattctcttc agtgcacctc tgtcctgtag ttcaccaggt agttataaaa
     8641 gatgctgacc ataagcactg aaggggatgt aacccaagac cttccatact gcctttggga
     8701 ttgtaactgc tcattctcaa attccttttg tgtggttttt tttgtttgtt ttgttttatt
     8761 ttgtttgttt ttttttgttt ttttgagttc atgtttgaaa acaacaaaat aaagtatcaa
     8821 caaaaacaaa a
//
