LOCUS       XM_039104848            8873 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin protein ligase E3 component
            n-recognin 3 (Ubr3), transcript variant X2, mRNA.
ACCESSION   XM_039104848
VERSION     XM_039104848.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104848.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8873
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8873
                     /gene="Ubr3"
                     /gene_synonym="RGD1565257"
                     /note="ubiquitin protein ligase E3 component n-recognin 3;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 75 ESTs, 2 long SRA reads, 1
                     Protein, and 98% coverage of the annotated genomic feature
                     by RNAseq alignments, including 15 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:311115"
                     /db_xref="RGD:1565257"
     CDS             321..6023
                     /gene="Ubr3"
                     /gene_synonym="RGD1565257"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase UBR3 isoform X2"
                     /protein_id="XP_038960776.1"
                     /db_xref="GeneID:311115"
                     /db_xref="RGD:1565257"
                     /translation="MAAAAAAAVGGPQPPQPEVSAQGPTLDKAATAAHLKAALSRPDN
                     RAGAEELQALLERVLNAERPLARAAGGEEAAGGGSPGEAEEDALEWCKCLLAGGGGYD
                     EFCAAVRAYDPAALCGLVWTANFVAYRCRTCGISPCMSLCAECFHQGDHTGHDFNMFR
                     SQAGGACDCGDSNVMRESGFCRRHQIKSSSNIPCVPKDLLMMSEFVLPRFIFCLIQYL
                     REGYNEPADTPSEKDLNKVLQLLEPQISFLEDLTKTGGAMRAVLTQVLTNQQSYKDLT
                     AGLGENTCAKKSHEKYLIALKSSGLTYPEDKLVYGIQEPSAGTSTLAAQGFAGATGTL
                     GQIDSSDEEDQDGSQGLGKRKRVKLSSGTKDQSIMDVLKHKSFLEELLFWTIKYEFPQ
                     KMVTFLLNMLPDQEYKVAFTKTFVQHYAFIMKTLKKSHESDTMSNRIVHISVQLFSNE
                     ELARQVTEECQLLDIMVTVLLYMMESCLIKSELQDEENSLHVVVNCGEALLKNNTYWP
                     LVSDFINILSHQSVAKRFLEDHGLLVTWMNFVSFFQGMNLNKRELNEHVEFESQTYYA
                     AFAAELEACAQPMWGLLSHCKVRETQEYTRNVVRYCLEALQDWFDAINFVDEPAPNQV
                     TFHLPLHRYYAMFLSKAVKCQELDLDSLLPDQEMLMKLMIHPLQIQASLAEIHSNMWV
                     RNGLQIKGQAMTYVQSHFCNSMIDPDIYLLQVCASRLDPDYFISSVFERFKVVDLLTM
                     ASQHHNMVLDVEHERSMLEGALTFLVILLSLRLHLGMSDDEILRAEMVAQLCMNDRTH
                     SSLLDLIPENPNPKSGIIPGSYSFESVLSAVADFKAPVFEPGGSMQQGMYTPKAEVWD
                     QEFDPVMVILRTVYRRDVQSAMDRYTAFLKQSGKFSGNPWPPYKKRTSLHPSYKGLMR
                     LLHCKTLHIVLFTLLYKILMDHQNLSEHVLCMVLYLIELGLEDSAEDDSEEEVSMGGP
                     ERCHDSWFPGSNLVSNMRHFINYVRVRVPETAPELKRDSLASTSSDGLGSLQNSRRPK
                     VLQRENSGTAQVFSLVAERRKKFQEIINRNNSEANQVVRPKTPSKWSAPGSAPQLTTA
                     ILEIKESILSLLIKLHHKLSGKQNSYYPPWLDDIEVLIQPEIPKYSHGDGITAVERIL
                     LKAAVQSRMNKRIIEEICRKVTPPVPPKKITTAEKKTLDKEERRQKARERQQKLLAEF
                     ASRQKSFMETAMDVDSPENDIPMEITTAEPQVSEAVYDCVICGQSGPSSEDRPTGLVV
                     LLQASSVLGQCRDNVEPKKLPITEEEQIYPWDTCAAVHDVRLSLLQRYFKDSSCLLAV
                     SIGWEGGVYVQTCGHTLHIDCHKSYMESLRNDQVLQGFSVDKGEFTCPLCRQFANSVL
                     PCYPGSNVENNLWQRPSNKSTQDLIKEVEELQGRPGAFPVSISSETNLSKEMESVMKD
                     IKNTTQKKYRDYSKTPGSPDNDFLFMYSVARTNLELELIHRGGSLCSGGASTAGKRSC
                     LNQLFHVLALHMRLYTIDSEYNPWKKLTHLVEDMNSQVGSEDQQPEVPVLYHDVTSLL
                     LIQILMMPQPLQKEHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHLGALKKDTC
                     DAEKSYEVLLGFVISELSKGKLYCEEGAQECTMVSPIAWSPESMERYIQDFCLPFLRI
                     SSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTFYQTDHPFISASCLDWPVAAFDII
                     TQWCFEIRSFTERHAEQGKALLIQESRWKLPHLLQLPENYNTIFQYYHRKTCSVCTKV
                     PKDPAVCLVCGAFVCLKGLCCKQQSYCECVLHSQNCGAGTGIFLLINASVIIIIRGHR
                     FCLWGSVYLDAHGEEDRDLRRGKPLYICEERYRVLEQQWVSHTFDHINKRWGPHYNGL
                     "
ORIGIN      
        1 tgcagaaaag ccgcttttat taaaggttgc cttggcgctg agttcttgtg taaggagttg
       61 tcagttttga aagttgggag ccaacaggta gagagggatc acaggagcag tacccgggct
      121 cggtggaggc gatgaccggg gagcccgacg aggggcgggg ctcggccgga gggcgtgagc
      181 aggggcgggg accgcgcaga agtgctctgc ggcgcccggt atcgcgagag ttgggcgggc
      241 gagccatcgc agcagtcaat tcccccaccc tcccgggagg agccgggggc cctggactct
      301 ccaaattctg agctctcatc atggcggcgg cggccgcggc ggccgtcggg ggcccgcagc
      361 caccccagcc ggaggtgtcc gcgcaggggc cgaccttaga caaggcggct accgccgcgc
      421 acctgaaggc cgctctcagc cggccggata accgtgcggg cgccgaggag ctgcaggcgc
      481 tgctggagcg ggtgctgaac gcagagcggc cgctggcccg ggctgcgggc ggcgaggagg
      541 cggcgggcgg cggcagccca ggcgaggccg aggaggatgc cctggagtgg tgtaagtgcc
      601 ttctggccgg cggcggcggc tacgatgagt tctgcgcggc cgtgcgggcc tacgaccccg
      661 cggcgctctg cggcctggtc tggacggcca acttcgtggc ctaccgctgc cggacgtgcg
      721 gcatctcccc ctgcatgtcg ctgtgcgcgg agtgcttcca ccagggcgac cacactggac
      781 acgacttcaa catgttccgc agccaggccg gaggcgcctg cgactgcggg gacagcaacg
      841 taatgcggga gagtgggttt tgcagaagac atcagattaa atcaagttct aatattccct
      901 gtgtccccaa agacttactg atgatgtctg aatttgttct tccaagattc attttttgtc
      961 ttattcagta cttaagagaa ggctataatg aaccagctga tacaccatca gaaaaagatc
     1021 tgaacaaagt ccttcagctt ttggagcctc agatttcctt tttagaagac ctgactaaaa
     1081 cgggaggagc aatgagggct gttctcactc aggtgctgac aaaccagcag agctacaaag
     1141 acctgactgc tggtcttgga gaaaatactt gtgcaaagaa gagtcatgag aagtacctta
     1201 tagctttgaa gagctccgga ctcacgtatc ctgaggataa gcttgtgtac gggatacagg
     1261 agccgtctgc tggcactagc actctggcag ctcaaggctt tgcaggtgct actgggacac
     1321 tgggtcagat agactcttca gatgaggagg accaagacgg gagtcaaggc ttgggcaaga
     1381 ggaagcgggt aaagctaagc agtggcacca aagatcaatc cataatggat gttttgaaac
     1441 ataaaagttt tttagaagaa ctattgtttt ggacaataaa gtatgaattc ccccagaaga
     1501 tggtaacttt cttactcaat atgcttccag atcaagagta taaggttgct tttacaaaaa
     1561 cttttgttca gcattatgca tttattatga aaacactgaa gaaaagtcac gagtcagaca
     1621 cgatgtccaa cagaattgtg catattagtg tccagttgtt cagcaatgag gagctagcca
     1681 gacaggtgac agaggagtgt cagctcctgg acatcatggt caccgtgctg ctgtacatga
     1741 tggagagctg cctcatcaaa agtgagctgc aagatgaaga gaacagttta catgtggtgg
     1801 tgaactgtgg agaagcctta ctgaagaata acacctactg gcctcttgtt agtgacttta
     1861 ttaatattct ttctcaccaa agtgtggcga agaggttttt ggaggatcat ggcttgttag
     1921 ttacgtggat gaactttgtt tctttctttc aaggtatgaa cttgaacaag cgagagctca
     1981 atgaacacgt ggagtttgag tctcaaactt actatgctgc ctttgctgct gagcttgaag
     2041 cctgtgcaca acccatgtgg gggcttttat cacattgcaa agtcagggaa actcaagagt
     2101 atacccgaaa tgttgtaagg tactgccttg aagctcttca agattggttt gatgctatta
     2161 actttgtaga tgagccagct cctaaccaag tcactttcca cctgccactg caccgttact
     2221 atgctatgtt tttgagtaag gctgtgaaat gtcaagaact agatttggat tcacttttac
     2281 cggatcagga aatgttaatg aaactaatga tccacccact ccaaattcaa gctagtcttg
     2341 ctgaaattca cagtaacatg tgggtaagaa atggtctgca aatcaaagga caagctatga
     2401 cctatgtcca gtctcatttc tgtaactcca tgattgatcc agatatttac ttattacagg
     2461 tctgtgcttc tagacttgac ccagattact ttatatcatc tgtctttgaa aggtttaagg
     2521 tggtggactt actgaccatg gcttcccagc accacaacat ggtgctcgat gtggagcacg
     2581 agcggtcaat gctagagggc gcgctcacct tcctcgtgat tcttttgagt cttcgtttac
     2641 acctagggat gtctgatgat gagattctca gggcagagat ggtagcccag ctgtgtatga
     2701 atgacaggac gcatagctct ttgcttgacc tcatcccaga aaatcccaac cctaaaagtg
     2761 gcattattcc tggaagctat agctttgaat cagttttatc tgctgtagct gactttaagg
     2821 ctcccgtttt tgaacctgga ggctccatgc aacaaggcat gtatactccc aaagctgaag
     2881 tctgggatca ggagtttgat cctgtcatgg tcattcttcg aacagtttat cgccgagatg
     2941 tgcagtctgc catggacaga tacacagcat ttttaaaaca gagtggaaaa ttttctggaa
     3001 atccctggcc tccttataag aaaagaacat cactccatcc cagttataaa ggtctcatga
     3061 gacttctgca ttgtaaaacc ttacacattg tgctgttcac tctgctttac aagattctga
     3121 tggatcatca aaatctgtct gaacacgtgc tctgcatggt gttgtatctg attgaattag
     3181 gcctggaaga ctctgctgag gacgactctg aggaagaggt atcaatgggt ggaccagaac
     3241 gttgtcatga tagttggttc cctggcagta acttggtatc aaacatgcgg cactttataa
     3301 attatgtcag agtgcgagtc ccagagactg ctcctgagtt gaaaagggat tccctcgcca
     3361 gcacgagctc tgatggcttg ggctctttac aaaattcccg acggcctaaa gttcttcaaa
     3421 gagagaattc tggtacagct caagttttca gcttagtagc agagcgtaga aagaaatttc
     3481 aggagatcat caatcgaaac aacagtgaag caaatcaggt ggttcggccc aagactccaa
     3541 gtaaatggtc agctcctggc tcagctcccc agttaaccac agccattttg gaaattaagg
     3601 aaagcatatt gtctttgcta ataaaacttc accacaaact ctcaggaaaa caaaactctt
     3661 actatcctcc atggcttgat gacatagaag ttttaataca accagaaatt ccaaaataca
     3721 gtcatggaga cggtataact gctgtagaaa ggattttgct aaaagctgca gtgcaaagca
     3781 gaatgaacaa gcgcatcatt gaagagatat gcagaaaagt gactcctccc gtgccaccca
     3841 aaaagatcac cacagcagag aagaagactc tggacaagga ggaaaggcgc caaaaggcta
     3901 gagaaaggca gcagaaattg cttgcagagt ttgcctcacg acagaaaagc tttatggaga
     3961 ctgcaatgga tgtcgattct cctgaaaacg atattcctat ggaaattacc acagcagaac
     4021 ctcaagtttc tgaagctgtg tatgactgtg ttatttgtgg acagagtggt ccttcttctg
     4081 aagacagacc tacaggactg gttgtactgt tacaagcatc atcagtttta ggtcagtgcc
     4141 gggacaatgt tgagccaaaa aagttgccta tcactgaaga ggaacagatt tacccttggg
     4201 acacatgtgc agccgttcac gatgtgaggc tttcattact gcaacgttat tttaaagata
     4261 gttcttgcct tttggcagta tcaattggct gggaaggagg tgtttatgta caaacttgtg
     4321 gccacacgtt gcacatagat tgtcataagt cctatatgga atcattacgg aatgaccagg
     4381 ttcttcaggg cttctcagtg gacaaaggag aattcacatg tccactctgc agacagtttg
     4441 ctaacagcgt tcttccatgt tatcctggaa gcaatgtgga aaataacctt tggcaacgtc
     4501 ctagtaacaa aagcacacaa gatctcataa aggaagtgga ggagctgcag ggacggccgg
     4561 gagctttccc agtaagcatc agttcagaaa ccaacctaag taaagaaatg gagtctgtaa
     4621 tgaaagatat aaaaaacacc actcagaaga aatacagaga ctatagcaag accccaggct
     4681 cgccagacaa tgactttctc tttatgtact ctgttgctag aaccaattta gagctggagc
     4741 tgattcacag aggaggcagc ctgtgctcag gcggtgcaag cacggctggg aagaggtctt
     4801 gtttgaatca gctgttccat gtattagcct tgcacatgcg gctttatacc attgactctg
     4861 agtataatcc atggaaaaaa ctcacccact tagtggaaga tatgaattca caggtgggga
     4921 gtgaagacca gcagcctgaa gttccagtcc tttatcatga tgtgacatcg ctcctgctca
     4981 tccagatctt aatgatgcca cagcccttac agaaagagca cttcacctgc attgtcaaag
     5041 ttctcttcac cctgctctac acccaggccc tggcagcgct ctcagtgaag ggcactgaag
     5101 aggatcggtc agcctggaaa caccttggag ctcttaaaaa ggatacatgt gatgcagaga
     5161 agtcttacga agtattgttg ggctttgtca taagtgagct gtctaaaggg aagttatatt
     5221 gtgaagaagg cgctcaggag tgtaccatgg tcagtcctat tgcttggtct cctgagtcca
     5281 tggaaagata catacaggat ttctgcttac ctttcctcag gatcagcagc cttcttcagc
     5341 accacctctt tggggaagat ttacccagtt gccaggaaga agaggaattt tcagtccttg
     5401 ccagctgcct gggacttctg ccaacttttt accaaacaga tcacccattc atcagtgcct
     5461 cgtgtctgga ctggccagtt gcagcatttg acattataac tcagtggtgt tttgagataa
     5521 gatcatttac agagaggcat gcagaacaag ggaaggcttt gctaatccaa gagtcaagat
     5581 ggaaattacc acacctgtta cagctgcccg agaattacaa cactattttt cagtactacc
     5641 acagaaaaac ctgcagtgtc tgcaccaagg ttcctaaaga cccagctgtt tgtcttgtgt
     5701 gtggcgcctt cgtctgcctg aaaggcctgt gctgcaagca gcagagctac tgtgaatgtg
     5761 tgctgcattc tcagaattgt ggtgccggaa cagggatttt ccttttaatc aatgcgtcag
     5821 tgattatcat catccgaggc caccgcttct gcctctgggg ctctgtctat ctggatgctc
     5881 atggagaaga ggaccgggac ctcaggcggg gcaagcctct ctacatctgc gaggagcggt
     5941 accgagttct cgagcagcag tgggtttccc acacttttga ccacatcaat aaaagatggg
     6001 gtccacatta caatgggctg tgacacacac ctcagcatcg cacatattat cattttcact
     6061 gagattgact ttcatcaact ataagcttta atttaatttg ggggattgat gtctttgctg
     6121 agagataaaa agtaaacatc cattatgaag ccttcccaaa gttaggtgct tggcaaccac
     6181 atcaatggtc tgatattctt ctaaaggatc tcagcaacag taacttagat catcctgcag
     6241 tggtcacttt taagtgcaca attaataaaa agcacaactt gtccacagaa atcattcaga
     6301 aatgattttc cctgcaatgc ccttagcggt tgttcactga cagagaggat gtgatttatt
     6361 tgaggtttta ctgctctttt tgtgttttta tttgcatctg ctaaacacaa tgcatcattt
     6421 cctttgtcat ccttgtgttg atttgagatt tttgctgtat gtaattagaa acaaatgtaa
     6481 aacatgattt atgtgaaata ttgtatagta aaacttggtc taatagtaga actttaaatt
     6541 tttttcttat tgtgaggaat ctgttaaaag tttaaggctt tgctgaaaac ttaattcatt
     6601 ctcaggaatt tcataaatgc tttccccggg taaataattt aactagctgt aaaatatagt
     6661 gcagtgtagt gcagcgcaca aggcggggca aggtgtatgt gtggtcgggg ggtccttaaa
     6721 aataaacatt tgtgggctga gggtgtagct cagtggcaga atgcttactt ggctaacatg
     6781 tatagaaccc gagtttcatc ttaagcacca cacacgcaca cacacaaaat caacttgcca
     6841 tttcaactga atgaattatt agagttgtta gtgacgagca gatgttacaa taaaatcaaa
     6901 gggttaagaa catatacatg gcagagtttt gattctgtgc atgcccacct tttattacca
     6961 accaagcctt tatttatatg atcagatcga aaagctcatt tgtcccaaca catgaacttt
     7021 aagttctgga actcccctga ctgactgaag aagctcatct gtgttacagt cctgcagggt
     7081 cacagttcac ggctgcttct gtgtgctttc ctccggcaga aaaggctcag aggtcttgac
     7141 cctgacaaag agccatgctt ctgctttaga catggctgtg aaggtcagct tgtgtgtggg
     7201 ggtttaattc agaatgggaa tgagtgggct caaatcctct gagtaagagg ggaagaagaa
     7261 catattttat tggtaccagg atttttccag gtgattattt cacccatagt acttactatc
     7321 aagcaattcc tggtactttt gatttccaag gcttattaca taaaattaca ttttttactt
     7381 gtgaaagtaa gaaatattga ataagaaaat atcaaagtaa catcagaccc atgttccaaa
     7441 atgttttgaa ttgacacagc attacagaat atgaaattaa cgtaaaacag tggctttgca
     7501 ttaaaataca ggaaacagag aaggacacac acagatgtct tcagaatgtc agaagactgc
     7561 ctgaggcatt ttaagaaaat atgtgggaat agcttgctat ttttatatac atttccaaat
     7621 ggtgagataa ctttgttaag acaagaatga cttgttcagg taaatccctg tccttcctac
     7681 acctgctcct taaaacgctg tgctacgagc tcagcctgct acctttttgc tttggtcatt
     7741 ataaatagca gaccattcgt aagtgtggtt gaagagcaaa tgctaactac atctctagta
     7801 aatactgtta caggactcat gaacttgagc aattttacag tttggaactc tgatgctata
     7861 tatacatggt ataatgtatt cagactttga tcactacata tttaaatgga atgtttatgg
     7921 tgttgcatat ggatgtgaag tgaaaatatt agccttaact ttaaaatttg gatatttgat
     7981 agtgtttatt ttgatattgg tgaattagtc accagtaaat tttaaaaaag cacttggttg
     8041 aaattgtact tgaaaacgta catgcatgct gctaaattag agcctccatt tcccctaact
     8101 tttataagtc ccatttataa acccactttt aaaataacag gtccaagtta gagtgatgtg
     8161 tgtatattat tcaaaaacat gtactggtgt gatcttgtat gaatgatcat ttaaatacag
     8221 tacattactg tagaagtgaa atcaaccttt ataattaagc agaaattaca aaactaggaa
     8281 taattgacat tgtaagatat gttaataaaa cctactgtca tttgctttgt gcaagatcct
     8341 taaaatgttg aatgtttatg ttttcttttc caatgatgtg acacaggaga gggatggcat
     8401 aattaggacc tgcctttcac tgtgctctct tgcttcctgc aggaccaggt cctgcttgtt
     8461 ttctgtggtc tcttgatcgc acttttgcta agagtaagtg tttgtgctga gagcagaagc
     8521 atgatgctgg cctggtccct gcctgctatc tgctgagagt tcccatctag gcctggaaac
     8581 tgcttcctaa gggcatttgt cttgagtggt ctgtggtctt acatgaactc accattctct
     8641 tcagtgcacc tctgtcctgt agttcaccag gtagttataa aagatgctga ccataagcac
     8701 tgaaggggat gtaacccaag accttccata ctgcctttgg gattgtaact gctcattctc
     8761 aaattccttt tgtgtggttt tttttgtttg ttttgtttta ttttgtttgt ttttttttgt
     8821 ttttttgagt tcatgtttga aaacaacaaa ataaagtatc aacaaaaaca aaa
//
