LOCUS       NM_001107543            2195 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus ubiquilin 3 (Ubqln3), mRNA.
ACCESSION   NM_001107543 XM_001073416 XM_219039
VERSION     NM_001107543.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2195)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2195)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC161885.1.
            
            On Apr 6, 2008 this sequence version replaced NM_001107543.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC161885.1, CK470809.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2195
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q32"
     gene            1..2195
                     /gene="Ubqln3"
                     /note="ubiquilin 3"
                     /db_xref="GeneID:308905"
                     /db_xref="RGD:1304920"
     exon            1..64
                     /gene="Ubqln3"
                     /inference="alignment:Splign:2.1.0"
     exon            65..2171
                     /gene="Ubqln3"
                     /inference="alignment:Splign:2.1.0"
     CDS             102..2069
                     /gene="Ubqln3"
                     /codon_start=1
                     /product="ubiquilin-3"
                     /protein_id="NP_001101013.1"
                     /db_xref="GeneID:308905"
                     /db_xref="RGD:1304920"
                     /translation="MAKSGEALPQGSPAPVQDSQLIRVTVKTPKDKEDFSVVDTCTIR
                     QLKEKISHRFKAHPNQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKMQRRTTGTEC
                     PAPPVSTPGPNPLELPQPNSAYPVDGSPSFSLGVLTGLSGLGLTSGSFSDQPGSLMWQ
                     HMSVPELVAQLVDDPFIQGLLSNTGLMRQLVLDNPHMQQLIQQNPEIGHILNNPEIMR
                     QTMEFLRNPSMMQEMMRSQDRALSNLESIPGGYNVLRTMYTDIMDPMLNAVQEQFGGN
                     PFATATTASTTTTSSQPSRTENCDPLPNPWTSTCGVSGSRQGRQPGDQDTSESRNRLP
                     SFLGNIGLFDYLQQLHETSQALGSYLQGTVPTPSSSQETPLSGNRVPPNLPPSPKPGS
                     GQPLPKDSVAIKGKSSCPAFLRHSSENSTGQGGSLHDSGKSSTGPSTGLPNLTSQIGD
                     NANRSPFVSTPSSLISPTPGAPESPWLPPTGYPRSLRSALTNQVPRMQNELHQQLPLL
                     LHLQTAMTNPRVMQALLQIEQGLQILATEAPRLLLWFMPCLAGLSGVIGGTESREGVV
                     MSEDPRPTPTSQISLVQGSAELGFHSSPFLQVLQALASTNPQQLQLEAHFRVQLEQLR
                     AMGFLNLEANLQALIATGGDVDAAVEKLRKS"
ORIGIN      
        1 gtacagcaag atgagggcag tttggagccc tgcctaagag gaaggacggg gccacagcag
       61 attgctgtgt ccccacagac ctgggcctcc tgctgcccat catggccaaa agtggagagg
      121 ctctaccaca gggcagccca gcgccagtac aggattccca gctcatccgg gtgacagtga
      181 agacacccaa ggacaaggag gatttctcag ttgtagacac gtgtaccatc cggcagttaa
      241 aggaaaagat atcacaccgc tttaaggcac atccaaatca gctggtcctg atctttgcgg
      301 gaaaaatcct caaggaccct gactcattgg cacagtgtgg agttcgagat ggcctcacag
      361 ttcacctcgt catcaagatg cagcgtcgga ccacaggcac tgagtgccca gcaccaccag
      421 tctccactcc aggcccaaat cctctagaac tccctcagcc aaattctgct taccctgtgg
      481 atgggtctcc ttctttcagc ttaggggtcc tcacaggcct cagtgggttg ggtctgacct
      541 caggtagctt ctctgaccag ccaggctcac tgatgtggca gcacatgtca gtgcctgaac
      601 ttgtggctca gctggttgat gaccccttca tccagggtct gctgtccaac acgggcctaa
      661 tgcgccagct ggttcttgat aatcctcaca tgcagcagct gatccagcag aaccctgaga
      721 ttggtcatat tcttaataac cccgagatca tgcggcagac aatggagttt ttacgtaacc
      781 cttccatgat gcaggagatg atgcgtagcc aggatcgagc actcagtaac ctggagagca
      841 tccctggtgg ctacaatgtg ctgcgtacta tgtacacaga tattatggat cccatgctta
      901 atgcggtaca ggagcagttt ggtggcaatc cttttgctac tgctactact gctagtacca
      961 ccaccaccag cagccaaccc tcaaggacag agaactgtga ccctcttccc aatccctgga
     1021 cttccacttg tggggtttca ggtagcagac aagggagaca gcctggggac caggatacat
     1081 ctgagagtag aaataggctt ccaagctttc tgggtaacat aggactcttt gattatctcc
     1141 aacagttaca cgagacttct caggccctgg gatcctacct gcagggtact gtgccaactc
     1201 caagttcaag ccaggaaaca ccactatcag gaaacagagt tcctccaaat ttacccccat
     1261 cccctaaacc tgggtcaggc caacctctgc ccaaagactc agtagcaatc aagggaaagt
     1321 cgtcctgccc agctttcttg agacattcat ctgagaacag tactggacaa ggtggaagcc
     1381 tacatgattc agggaagagc tctactggcc cgagtactgg cctgcccaat cttacctctc
     1441 agatagggga taatgccaac agatccccat ttgtttctac accatcatcc cttatatcac
     1501 ctactcctgg agccccagaa tctccctggc ttcctccaac aggttaccca agatctctga
     1561 gatcagcttt aacaaatcaa gtccctcgaa tgcagaatga gctacatcaa cagctcccac
     1621 tactgctgca ccttcagaca gccatgacaa atccccgtgt catgcaagcc ttgctgcaga
     1681 ttgagcaggg tctgcagatt ctggctactg aagcaccccg cctcctgctc tggttcatgc
     1741 cttgcctagc agggttgagt ggtgtaatag gaggtacaga atctagggaa ggtgttgtta
     1801 tgtctgagga tccccgacca accccaactt ctcagatttc cttagtacag ggttctgcag
     1861 agctaggttt ccattcctcc ccctttctcc aggtgttgca agcgttagct agtaccaatc
     1921 cccagcagct acaactggag gctcacttcc gggtacagct ggagcaacta cgggctatgg
     1981 gctttctgaa tctggaagcc aatctccagg ccctcattgc tacagggggt gatgtagatg
     2041 ctgctgtgga gaaactgagg aagtcttagg aactcttgtt atttggacca tatcttttcc
     2101 tttgtgttct tcccccatgt cttattaccc tagttctcct attcttgaat acagctgcac
     2161 tataaaccaa aaaaaaaaaa aaaaaaaaaa aaaaa
//
