LOCUS       XM_039081290            3542 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus upstream binding protein 1 (Ubp1),
            transcript variant X5, mRNA.
ACCESSION   XM_039081290
VERSION     XM_039081290.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039081290.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3542
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3542
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /note="upstream binding protein 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 48 ESTs, 2 long SRA reads, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 175 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:301038"
                     /db_xref="RGD:1564700"
     CDS             266..1888
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /codon_start=1
                     /product="upstream-binding protein 1 isoform X3"
                     /protein_id="XP_038937218.1"
                     /db_xref="GeneID:301038"
                     /db_xref="RGD:1564700"
                     /translation="MAWVLSMDEVIESGLVHDFDSSLSGIGQELGAGAYSMSDVLALP
                     IFKQEDSSLSLEAEAKHPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKM
                     GDVPEISGKLVKSIIRVVFHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDT
                     RTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNEN
                     GEYTDHLHSASCQIKVFKPKGADRKQKNDREKMEKRTAHEKEKYQPSYDTTILTEMRL
                     EPIIEDAVEHEQKKSSKRTLPADYGDSLAKRGSCSPWPDTPTAYVNNSPSPAPTFTSS
                     QQSTCSVPDSNSSSPNHQGDGVAQASGEQIQPSATTQETQQWLLKNRFSSYTRLFSNF
                     SGADLLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCQEQPSSAVPQGQPQA
                     AGSGGEGGAGTPCVYHAIYLEEMVASEVARKLASVFNIPFHQINQVYRQGPTGIHILV
                     SDQMVQNFQDESCFLFSTVKAENNDGIHIILK"
ORIGIN      
        1 cgtgaggggc gggcctggga ggggagcggc cgcgggggcg gggccggggc ggggccggag
       61 gaggaggcgg aagcggcgag cgagtccgag ccggagccgc atcgaagctg cgtccgggcc
      121 ggcggagcgg cggtggcggg gtgaccactc gccgcgccgc cggaggcttc acccgcgtcc
      181 tccctcagga cgcgcccgcg gagctcgggc gccttctccc cggacccgga ggccgcgctg
      241 cgcggggcgg cggcgaggcc ggaagatggc ctgggtgctc agtatggacg aggtgatcga
      301 gtccgggctg gtgcacgact tcgactccag cctgtccggc atcggacaag agctgggcgc
      361 tggcgcctac agcatgagtg atgtgttggc gctacccatt ttcaaacaag aagactccag
      421 cctttctttg gaggctgagg ccaagcaccc cccattccag tacgtaatgt gtgctgcaac
      481 ctcaccagcc gtgaagctgc atgatgagac gctcacttac ttgaaccaag gccagtctta
      541 tgaaattcgg atgctggata atcgcaaaat gggagatgtg cctgagatca gtgggaagtt
      601 ggtgaagagc atcataagag tggtgttcca tgacagacgg ctacagtaca cggagcatca
      661 gcagcttgaa ggctggaagt ggaatcgccc aggagaccgg cttcttgatt tagatattcc
      721 aatgtctgtg ggaataattg acacaagaac aaatccaagc cagttaaatg cagttgaatt
      781 tctgtgggac cctgcaaagc gcacatctgc cttcattcag gtacactgta tcagcaccga
      841 attcacccca cgtaagcatg gaggtgaaaa aggagtgcct tttaggatcc aggttgacac
      901 ctttaagcag aatgaaaacg gggaatacac agatcatctt cactcagcta gctgccaaat
      961 caaagtcttt aagcctaaag gtgcggacag gaaacaaaaa aatgaccgag aaaagatgga
     1021 gaagagaaca gctcatgaaa aagaaaagta tcagccgtct tacgacacca ccatcctcac
     1081 agagatgagg cttgagccta taattgaaga tgcagttgaa catgagcaga aaaagtccag
     1141 caagcggact ttgccagcag actacggtga ttctctggca aagcgaggca gttgctctcc
     1201 atggcccgac acccctacag cctatgtgaa taacagccct tccccagcgc ccactttcac
     1261 ctcctcacag cagagcacgt gcagtgtccc agacagcaat tcttcatccc caaatcacca
     1321 gggagatgga gttgcacagg catccgggga gcaaattcag ccttcagcta caacccagga
     1381 aacacagcag tggctgctca aaaacaggtt ctcttcctac acaagactgt tctctaattt
     1441 ttcaggtgcc gacttattaa agctgacaaa ggaggattta gttcagattt gtggtgcagc
     1501 cgatggaatt aggctctata attccctgaa gtcaaggtcg gttaggcccc gcttaaccat
     1561 ctatgtctgc caggagcagc cgagcagtgc tgtgccacaa gggcagccac aagctgcagg
     1621 cagtggaggt gaaggtggcg ctgggacgcc ctgcgtttat catgcaatct acttggaaga
     1681 aatggttgct tcagaagttg ctcgaaaact tgcctcggtg tttaatattc ctttccacca
     1741 aattaaccag gtttacagac agggccccac tggtatccac attcttgtta gtgaccagat
     1801 ggttcagaac tttcaagatg agagttgttt tttattctct acagtaaaag ctgaaaataa
     1861 tgatggtatt cacataattt tgaagtgata ccttatacag actgaactct attcagtacc
     1921 aaataaagtc atgcttaaaa gtgtgtgaag actgaatcca agaagtctgg gaattggatt
     1981 ttactgtgaa atgtttcata ttgaaaacac aagatgacct tcctaatgag ctgtaggaga
     2041 gacaagtctc ctcattgtca ctgccacagc ccagcatcct cgtgagagag agcatgtcag
     2101 gtgacgtgca accagctcct aaccatggtg atcacgagta cttgcttccc tggcaggggc
     2161 cagcggaaag acccccgccc cacctccccc agaagcagtt gctgctgctt ttcacactgt
     2221 atgcggtttg gattgaatgt aaaactcaac cgtgggcatt tacctttctg tgccagtttg
     2281 gcttttgttg cctgaccctt atgctgacct ggggaggaga tagggggagc ttctggggga
     2341 gctgccctgc actgcgctga caaagcagaa tcggtcaggt aagaggctga gcacctcctc
     2401 cgaagtgatc atgtctgaag gtgttcgtca gaggggatcc tgccagacaa gaagggccaa
     2461 gatgatgagc aaacagcact gtcagccata ccttgtgagg tcagtgtgag ccctaagagt
     2521 acagagactt gggtgtttgg ctttcgctcc cagttttagc attttagttt ctggatctca
     2581 ccttttgaag cctccttgcc ttttaaactc gtgtggtttc cttttctcat ctccccattc
     2641 ccccacttca gcctcccaag tagctgggat gctaggtgtg cactcacttg tcttgtgccc
     2701 agctctgttc ttaaatatgt ctaaagccct tccccagaca ttagaactag gtgatggaat
     2761 gggggacagt attgttgttg atagtttctg atgatattaa aggaattttt tgaatgagac
     2821 aaaattaccc atggaaacac tagatgtcat aacaagacac taaaatgtac cataaacctt
     2881 cccttttctc ccctcaaata ctgagtttca atacaatcat ggatagatag tgtggtgatt
     2941 ggtgggggct ctatactctg catccttctt gctttgtctg tgacaggtgt gcctgtgagt
     3001 cgtgtactcg cacactgctc agaaagggag tcgttggctt ttccctttct acgccgccat
     3061 tacctctccc ctcactccga gtttttaaaa acttctttcc attttaatta tgtagcgtct
     3121 gtacccgttt gctcagctgc tggctgtgaa tgcgcttgtc tgacccctgt tgttcgggtg
     3181 ggtaggaata gttaaggttt aagtgtaatc tcccccagaa gacagactac tccatccttc
     3241 agtgggcaga agcgttgaca gcctgtttta cctgtccctg gttaattact tgccacaaaa
     3301 caaactgtct caatattttc ctctggggct tggcagtgct gtagctctgc aagccctcta
     3361 gggggcgctc ccatccgtcc ttccctttgc ttttgtgtga ccacatgctt tctttctgta
     3421 ccattcactt acttgggaaa gaagtgaatt tatctcctaa ttgttttaga attttgcttg
     3481 tctatttagc tttctttttt ggatctcatg atttatggaa caataaatgt catttaatgc
     3541 tg
//
