LOCUS       XM_039081289            3560 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus upstream binding protein 1 (Ubp1),
            transcript variant X4, mRNA.
ACCESSION   XM_039081289
VERSION     XM_039081289.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039081289.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3560
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3560
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /note="upstream binding protein 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 47 ESTs, 2 long SRA reads, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 136 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:301038"
                     /db_xref="RGD:1564700"
     CDS             284..1906
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /codon_start=1
                     /product="upstream-binding protein 1 isoform X3"
                     /protein_id="XP_038937217.1"
                     /db_xref="GeneID:301038"
                     /db_xref="RGD:1564700"
                     /translation="MAWVLSMDEVIESGLVHDFDSSLSGIGQELGAGAYSMSDVLALP
                     IFKQEDSSLSLEAEAKHPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKM
                     GDVPEISGKLVKSIIRVVFHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDT
                     RTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNEN
                     GEYTDHLHSASCQIKVFKPKGADRKQKNDREKMEKRTAHEKEKYQPSYDTTILTEMRL
                     EPIIEDAVEHEQKKSSKRTLPADYGDSLAKRGSCSPWPDTPTAYVNNSPSPAPTFTSS
                     QQSTCSVPDSNSSSPNHQGDGVAQASGEQIQPSATTQETQQWLLKNRFSSYTRLFSNF
                     SGADLLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCQEQPSSAVPQGQPQA
                     AGSGGEGGAGTPCVYHAIYLEEMVASEVARKLASVFNIPFHQINQVYRQGPTGIHILV
                     SDQMVQNFQDESCFLFSTVKAENNDGIHIILK"
ORIGIN      
        1 gaggggcggg cctgggaggg gagcggccgc gggggcgggg ccggggcggg gccggaggag
       61 gaggcggaag cggcgagcga gtccgagccg gagccgcatc gaagctgcgt ccgggccggc
      121 ggagcggcgg tggcgggccg cgtcccgcgc cgccgcaggt gaccactcgc cgcgccgccg
      181 gaggcttcac ccgcgtcctc cctcaggacg cgcccgcgga gctcgggcgc cttctccccg
      241 gacccggagg ccgcgctgcg cggggcggcg gcgaggccgg aagatggcct gggtgctcag
      301 tatggacgag gtgatcgagt ccgggctggt gcacgacttc gactccagcc tgtccggcat
      361 cggacaagag ctgggcgctg gcgcctacag catgagtgat gtgttggcgc tacccatttt
      421 caaacaagaa gactccagcc tttctttgga ggctgaggcc aagcaccccc cattccagta
      481 cgtaatgtgt gctgcaacct caccagccgt gaagctgcat gatgagacgc tcacttactt
      541 gaaccaaggc cagtcttatg aaattcggat gctggataat cgcaaaatgg gagatgtgcc
      601 tgagatcagt gggaagttgg tgaagagcat cataagagtg gtgttccatg acagacggct
      661 acagtacacg gagcatcagc agcttgaagg ctggaagtgg aatcgcccag gagaccggct
      721 tcttgattta gatattccaa tgtctgtggg aataattgac acaagaacaa atccaagcca
      781 gttaaatgca gttgaatttc tgtgggaccc tgcaaagcgc acatctgcct tcattcaggt
      841 acactgtatc agcaccgaat tcaccccacg taagcatgga ggtgaaaaag gagtgccttt
      901 taggatccag gttgacacct ttaagcagaa tgaaaacggg gaatacacag atcatcttca
      961 ctcagctagc tgccaaatca aagtctttaa gcctaaaggt gcggacagga aacaaaaaaa
     1021 tgaccgagaa aagatggaga agagaacagc tcatgaaaaa gaaaagtatc agccgtctta
     1081 cgacaccacc atcctcacag agatgaggct tgagcctata attgaagatg cagttgaaca
     1141 tgagcagaaa aagtccagca agcggacttt gccagcagac tacggtgatt ctctggcaaa
     1201 gcgaggcagt tgctctccat ggcccgacac ccctacagcc tatgtgaata acagcccttc
     1261 cccagcgccc actttcacct cctcacagca gagcacgtgc agtgtcccag acagcaattc
     1321 ttcatcccca aatcaccagg gagatggagt tgcacaggca tccggggagc aaattcagcc
     1381 ttcagctaca acccaggaaa cacagcagtg gctgctcaaa aacaggttct cttcctacac
     1441 aagactgttc tctaattttt caggtgccga cttattaaag ctgacaaagg aggatttagt
     1501 tcagatttgt ggtgcagccg atggaattag gctctataat tccctgaagt caaggtcggt
     1561 taggccccgc ttaaccatct atgtctgcca ggagcagccg agcagtgctg tgccacaagg
     1621 gcagccacaa gctgcaggca gtggaggtga aggtggcgct gggacgccct gcgtttatca
     1681 tgcaatctac ttggaagaaa tggttgcttc agaagttgct cgaaaacttg cctcggtgtt
     1741 taatattcct ttccaccaaa ttaaccaggt ttacagacag ggccccactg gtatccacat
     1801 tcttgttagt gaccagatgg ttcagaactt tcaagatgag agttgttttt tattctctac
     1861 agtaaaagct gaaaataatg atggtattca cataattttg aagtgatacc ttatacagac
     1921 tgaactctat tcagtaccaa ataaagtcat gcttaaaagt gtgtgaagac tgaatccaag
     1981 aagtctggga attggatttt actgtgaaat gtttcatatt gaaaacacaa gatgaccttc
     2041 ctaatgagct gtaggagaga caagtctcct cattgtcact gccacagccc agcatcctcg
     2101 tgagagagag catgtcaggt gacgtgcaac cagctcctaa ccatggtgat cacgagtact
     2161 tgcttccctg gcaggggcca gcggaaagac ccccgcccca cctcccccag aagcagttgc
     2221 tgctgctttt cacactgtat gcggtttgga ttgaatgtaa aactcaaccg tgggcattta
     2281 cctttctgtg ccagtttggc ttttgttgcc tgacccttat gctgacctgg ggaggagata
     2341 gggggagctt ctgggggagc tgccctgcac tgcgctgaca aagcagaatc ggtcaggtaa
     2401 gaggctgagc acctcctccg aagtgatcat gtctgaaggt gttcgtcaga ggggatcctg
     2461 ccagacaaga agggccaaga tgatgagcaa acagcactgt cagccatacc ttgtgaggtc
     2521 agtgtgagcc ctaagagtac agagacttgg gtgtttggct ttcgctccca gttttagcat
     2581 tttagtttct ggatctcacc ttttgaagcc tccttgcctt ttaaactcgt gtggtttcct
     2641 tttctcatct ccccattccc ccacttcagc ctcccaagta gctgggatgc taggtgtgca
     2701 ctcacttgtc ttgtgcccag ctctgttctt aaatatgtct aaagcccttc cccagacatt
     2761 agaactaggt gatggaatgg gggacagtat tgttgttgat agtttctgat gatattaaag
     2821 gaattttttg aatgagacaa aattacccat ggaaacacta gatgtcataa caagacacta
     2881 aaatgtacca taaaccttcc cttttctccc ctcaaatact gagtttcaat acaatcatgg
     2941 atagatagtg tggtgattgg tgggggctct atactctgca tccttcttgc tttgtctgtg
     3001 acaggtgtgc ctgtgagtcg tgtactcgca cactgctcag aaagggagtc gttggctttt
     3061 ccctttctac gccgccatta cctctcccct cactccgagt ttttaaaaac ttctttccat
     3121 tttaattatg tagcgtctgt acccgtttgc tcagctgctg gctgtgaatg cgcttgtctg
     3181 acccctgttg ttcgggtggg taggaatagt taaggtttaa gtgtaatctc ccccagaaga
     3241 cagactactc catccttcag tgggcagaag cgttgacagc ctgttttacc tgtccctggt
     3301 taattacttg ccacaaaaca aactgtctca atattttcct ctggggcttg gcagtgctgt
     3361 agctctgcaa gccctctagg gggcgctccc atccgtcctt ccctttgctt ttgtgtgacc
     3421 acatgctttc tttctgtacc attcacttac ttgggaaaga agtgaattta tctcctaatt
     3481 gttttagaat tttgcttgtc tatttagctt tcttttttgg atctcatgat ttatggaaca
     3541 ataaatgtca tttaatgctg
//
