LOCUS       NM_001191819            3469 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus upstream binding protein 1 (Ubp1), mRNA.
ACCESSION   NM_001191819 XM_238562
VERSION     NM_001191819.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3469)
  AUTHORS   Parekh,V., McEwen,A., Barbour,V., Takahashi,Y., Rehg,J.E.,
            Jane,S.M. and Cunningham,J.M.
  TITLE     Defective extraembryonic angiogenesis in mice lacking LBP-1a, a
            member of the grainyhead family of transcription factors
  JOURNAL   Mol Cell Biol 24 (16), 7113-7129 (2004)
   PUBMED   15282311
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            FN798828.1, FM064075.1, JAXUCZ010000008.1, BQ780402.1 and
            FM039161.1.
            
            On Aug 5, 2017 this sequence version replaced NM_001191819.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.32471.1,
                                           SRR26643291.24466.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-616               FN798828.1         58-673
            617-977             FM064075.1         226-586
            978-1009            JAXUCZ010000008.1  122775869-122775900
            1010-1117           JAXUCZ010000008.1  122776342-122776449
            1118-1190           JAXUCZ010000008.1  122781630-122781702
            1191-1874           BQ780402.1         17-700              c
            1875-3001           JAXUCZ010000008.1  122792230-122793356
            3002-3469           FM039161.1         1-468
FEATURES             Location/Qualifiers
     source          1..3469
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..3469
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /note="upstream binding protein 1"
                     /db_xref="GeneID:301038"
                     /db_xref="RGD:1564700"
     exon            1..303
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /inference="alignment:Splign:2.1.0"
     CDS             191..1813
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /note="upstream binding protein 1 (LBP-1a)"
                     /codon_start=1
                     /product="upstream-binding protein 1"
                     /protein_id="NP_001178748.1"
                     /db_xref="GeneID:301038"
                     /db_xref="RGD:1564700"
                     /translation="MAWVLSMDEVIESGLVHDFDSSLSGIGQELGAGAYSMSDVLALP
                     IFKQEDSSLSLEAEAKHPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKM
                     GDVPEISGKLVKSIIRVVFHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDT
                     RTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNEN
                     GEYTDHLHSASCQIKVFKPKGADRKQKNDREKMEKRTAHEKEKYQPSYDTTILTEMRL
                     EPIIEDAVEHEQKKSSKRTLPADYGDSLAKRGSCSPWPDTPTAYVNNSPSPAPTFTSS
                     QQSTCSVPDSNSSSPNHQGDGVAQASGEQIQPSATTQETQQWLLKNRFSSYTRLFSNF
                     SGADLLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCQEQPSSAVPQGQPQA
                     AGSGGEGGAGTPCVYHAIYLEEMVASEVARKLASVFNIPFHQINQVYRQGPTGIHILV
                     SDQMVQNFQDESCFLFSTVKAENNDGIHIILK"
     exon            304..455
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /inference="alignment:Splign:2.1.0"
     exon            456..532
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /inference="alignment:Splign:2.1.0"
     exon            533..638
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /inference="alignment:Splign:2.1.0"
     exon            639..745
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /inference="alignment:Splign:2.1.0"
     exon            746..898
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /inference="alignment:Splign:2.1.0"
     exon            899..1009
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /inference="alignment:Splign:2.1.0"
     exon            1010..1117
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /inference="alignment:Splign:2.1.0"
     exon            1118..1221
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /inference="alignment:Splign:2.1.0"
     exon            1222..1276
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /inference="alignment:Splign:2.1.0"
     exon            1277..1370
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /inference="alignment:Splign:2.1.0"
     exon            1371..1461
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /inference="alignment:Splign:2.1.0"
     exon            1462..1580
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /inference="alignment:Splign:2.1.0"
     exon            1581..1723
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /inference="alignment:Splign:2.1.0"
     exon            1724..1775
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /inference="alignment:Splign:2.1.0"
     exon            1776..3469
                     /gene="Ubp1"
                     /gene_synonym="RGD1564700"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cacgctgtgc cctgacagct gggcctcggc cgctctcgtc tcagccgcgt cccgcgccgc
       61 cgcaggtgac cactcgccgc gccgccggag gcttcacccg cgtcctccct caggacgcgc
      121 ccgcggagct cgggcgcctt ctccccggac ccggaggccg cgctgcgcgg ggcggcggcg
      181 aggccggaag atggcctggg tgctcagtat ggacgaggtg atcgagtccg ggctggtgca
      241 cgacttcgac tccagcctgt ccggcatcgg acaagagctg ggcgctggcg cctacagcat
      301 gagtgatgtg ttggcgctac ccattttcaa acaagaagac tccagccttt ctttggaggc
      361 tgaggccaag caccccccat tccagtacgt aatgtgtgct gcaacctcac cagccgtgaa
      421 gctgcatgat gagacgctca cttacttgaa ccaaggccag tcttatgaaa ttcggatgct
      481 ggataatcgc aaaatgggag atgtgcctga gatcagtggg aagttggtga agagcatcat
      541 aagagtggtg ttccatgaca gacggctaca gtacacggag catcagcagc ttgaaggctg
      601 gaagtggaat cgcccaggag accggcttct tgatttagat attccaatgt ctgtgggaat
      661 aattgacaca agaacaaatc caagccagtt aaatgcagtt gaatttctgt gggaccctgc
      721 aaagcgcaca tctgccttca ttcaggtaca ctgtatcagc accgaattca ccccacgtaa
      781 gcatggaggt gaaaaaggag tgccttttag gatccaggtt gacaccttta agcagaatga
      841 aaacggggaa tacacagatc atcttcactc agctagctgc caaatcaaag tctttaagcc
      901 taaaggtgcg gacaggaaac aaaaaaatga ccgagaaaag atggagaaga gaacagctca
      961 tgaaaaagaa aagtatcagc cgtcttacga caccaccatc ctcacagaga tgaggcttga
     1021 gcctataatt gaagatgcag ttgaacatga gcagaaaaag tccagcaagc ggactttgcc
     1081 agcagactac ggtgattctc tggcaaagcg aggcagttgc tctccatggc ccgacacccc
     1141 tacagcctat gtgaataaca gcccttcccc agcgcccact ttcacctcct cacagcagag
     1201 cacgtgcagt gtcccagaca gcaattcttc atccccaaat caccagggag atggagttgc
     1261 acaggcatcc ggggagcaaa ttcagccttc agctacaacc caggaaacac agcagtggct
     1321 gctcaaaaac aggttctctt cctacacaag actgttctct aatttttcag gtgccgactt
     1381 attaaagctg acaaaggagg atttagttca gatttgtggt gcagccgatg gaattaggct
     1441 ctataattcc ctgaagtcaa ggtcggttag gccccgctta accatctatg tctgccagga
     1501 gcagccgagc agtgctgtgc cacaagggca gccacaagct gcaggcagtg gaggtgaagg
     1561 tggcgctggg acgccctgcg tttatcatgc aatctacttg gaagaaatgg ttgcttcaga
     1621 agttgctcga aaacttgcct cggtgtttaa tattcctttc caccaaatta accaggttta
     1681 cagacagggc cccactggta tccacattct tgttagtgac cagatggttc agaactttca
     1741 agatgagagt tgttttttat tctctacagt aaaagctgaa aataatgatg gtattcacat
     1801 aattttgaag tgatacctta tacagactga actctattca gtaccaaata aagtcatgct
     1861 taaaagtgtg tgaagactga atccaagaag tctgggaatt ggattttact gtgaaatgtt
     1921 tcatattgaa aacacaagat gaccttccta atgagctgta ggagagacaa gtctcctcat
     1981 tgtcactgcc acagcccagc atcctcgtga gagagagcat gtcaggtgac gtgcaaccag
     2041 ctcctaacca tggtgatcac gagtacttgc ttccctggca ggggccagcg gaaagacccc
     2101 cgccccacct cccccagaag cagttgctgc tgcttttcac actgtatgcg gtttggattg
     2161 aatgtaaaac tcaaccgtgg gcatttacct ttctgtgcca gtttggcttt tgttgcctga
     2221 cccttatgct gacctgggga ggagataggg ggagcttctg ggggagctgc cctgcactgc
     2281 gctgacaaag cagaatcggt caggtaagag gctgagcacc tcctccgaag tgatcatgtc
     2341 tgaaggtgtt cgtcagaggg gatcctgcca gacaagaagg gccaagatga tgagcaaaca
     2401 gcactgtcag ccataccttg tgaggtcagt gtgagcccta agagtacaga gacttgggtg
     2461 tttggctttc gctcccagtt ttagcatttt agtttctgga tctcaccttt tgaagcctcc
     2521 ttgcctttta aactcgtgtg gtttcctttt ctcatctccc cattccccca cttcagcctc
     2581 ccaagtagct gggatgctag gtgtgcactc acttgtcttg tgcccagctc tgttcttaaa
     2641 tatgtctaaa gcccttcccc agacattaga actaggtgat ggaatggggg acagtattgt
     2701 tgttgatagt ttctgatgat attaaaggaa ttttttgaat gagacaaaat tacccatgga
     2761 aacactagat gtcataacaa gacactaaaa tgtaccataa accttccctt ttctcccctc
     2821 aaatactgag tttcaataca atcatggata gatagtgtgg tgattggtgg gggctctata
     2881 ctctgcatcc ttcttgcttt gtctgtgaca ggtgtgcctg tgagtcgtgt actcgcacac
     2941 tgctcagaaa gggagtcgtt ggcttttccc tttctacgcc gccattacct ctcccctcac
     3001 tccgagtttt taaaaacttc tttccatttt aattatgtag cgtctgtacc cgtttgctca
     3061 gctgctggct gtgaatgcgc ttgtctgacc cctgttgttc gggtgggtag gaatagttaa
     3121 ggtttaagtg taatctcccc cagaagacag actactccat ccttcagtgg gcagaagcgt
     3181 tgacagcctg ttttacctgt ccctggttaa ttacttgcca caaaacaaac tgtctcaata
     3241 ttttcctctg gggcttggca gtgctgtagc tctgcaagcc ctctaggggg cgctcccatc
     3301 cgtccttccc tttgcttttg tgtgaccaca tgctttcttt ctgtaccatt cacttacttg
     3361 ggaaagaagt gaatttatct cctaattgtt ttagaatttt gcttgtctat ttagctttct
     3421 tttttggatc tcatgattta tggaacaata aatgtcattt aatgctgtg
//
