LOCUS       NM_001106977            6379 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ubinuclein 1 (Ubn1), mRNA.
ACCESSION   NM_001106977 XM_001079088 XM_220175
VERSION     NM_001106977.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6379)
  AUTHORS   Aho,S., Lupo,J., Coly,P.A., Sabine,A., Castellazzi,M., Morand,P.,
            Sergeant,A., Manet,E., Boyer,V. and Gruffat,H.
  TITLE     Characterization of the ubinuclein protein as a new member of the
            nuclear and adhesion complex components (NACos)
  JOURNAL   Biol Cell 101 (6), 319-334 (2009)
   PUBMED   18823282
REFERENCE   2  (bases 1 to 6379)
  AUTHORS   Hendrickx,A., Beullens,M., Ceulemans,H., Den Abt,T., Van Eynde,A.,
            Nicolaescu,E., Lesage,B. and Bollen,M.
  TITLE     Docking motif-guided mapping of the interactome of protein
            phosphatase-1
  JOURNAL   Chem Biol 16 (4), 365-371 (2009)
   PUBMED   19389623
REFERENCE   3  (bases 1 to 6379)
  AUTHORS   Tagami,H., Ray-Gallet,D., Almouzni,G. and Nakatani,Y.
  TITLE     Histone H3.1 and H3.3 complexes mediate nucleosome assembly
            pathways dependent or independent of DNA synthesis
  JOURNAL   Cell 116 (1), 51-61 (2004)
   PUBMED   14718166
REFERENCE   4  (bases 1 to 6379)
  AUTHORS   Aho,S., Buisson,M., Pajunen,T., Ryoo,Y.W., Giot,J.F., Gruffat,H.,
            Sergeant,A. and Uitto,J.
  TITLE     Ubinuclein, a novel nuclear protein interacting with cellular and
            viral transcription factors
  JOURNAL   J Cell Biol 148 (6), 1165-1176 (2000)
   PUBMED   10725330
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Dec 21, 2010 this sequence version replaced NM_001106977.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on partial alignments and orthologous
            comparisons.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.35484.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-760               JAXUCZ010000010.1  11037707-11038466   c
            761-1048            JAXUCZ010000010.1  11033734-11034021   c
            1049-1135           JAXUCZ010000010.1  11028126-11028212   c
            1136-1231           JAXUCZ010000010.1  11027567-11027662   c
            1232-1366           JAXUCZ010000010.1  11027105-11027239   c
            1367-1470           JAXUCZ010000010.1  11026390-11026493   c
            1471-1909           JAXUCZ010000010.1  11025259-11025697   c
            1910-1980           JAXUCZ010000010.1  11018724-11018794   c
            1981-2110           JAXUCZ010000010.1  11017254-11017383   c
            2111-2229           JAXUCZ010000010.1  11017012-11017130   c
            2230-2358           JAXUCZ010000010.1  11016507-11016635   c
            2359-2505           JAXUCZ010000010.1  11016176-11016322   c
            2506-2556           JAXUCZ010000010.1  11015093-11015143   c
            2557-2599           JAXUCZ010000010.1  11014953-11014995   c
            2600-3823           JAXUCZ010000010.1  11011435-11012658   c
            3824-4067           JAXUCZ010000010.1  11007665-11007908   c
            4068-4157           JAXUCZ010000010.1  11007342-11007431   c
            4158-6379           JAXUCZ010000010.1  11003036-11005257   c
FEATURES             Location/Qualifiers
     source          1..6379
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..6379
                     /gene="Ubn1"
                     /note="ubinuclein 1"
                     /db_xref="GeneID:302935"
                     /db_xref="RGD:1311582"
     exon            1..760
                     /gene="Ubn1"
                     /inference="alignment:Splign:2.1.0"
     exon            761..1048
                     /gene="Ubn1"
                     /inference="alignment:Splign:2.1.0"
     CDS             800..4207
                     /gene="Ubn1"
                     /codon_start=1
                     /product="ubinuclein-1"
                     /protein_id="NP_001100447.2"
                     /db_xref="GeneID:302935"
                     /db_xref="RGD:1311582"
                     /translation="MSEPHRVQFTSLPGSLNPALLKKSRKEEVGGTEQHQDCEPAAAA
                     VRITLTLFEPDHKRCPEFFYPELVKNTRGKVKGLHPGDKKKDVLDPFNDEEKERHKVE
                     ALARKFEEKYGGKKRRKDRIQDLIDMGYGYDESDSFIDNSEAYDELVPASLTTKYGGF
                     YINSGTLQFRQASESEDDFIKEKKKKSPKKRKLKEGGEKIKKKKKDDTYDKEKKSKKS
                     KFSKAGFTALNASKEKKKKKYSGSLSVREMLKKFQKEKEAQKKREEEHKPVAVSSVEA
                     QGLRELEGTSDPLLSLFGSTSDNDLLQAATAMDSLTDLDLEQLLSESPEGSPFRDMDD
                     GSDSLGVGLDQEFRQPSSFPEGLPTPLEKRVKELAQAARAAEGDSKQKFFTQDINGIL
                     LDIEVQTRELTSQIRSGVFAYLASFLPCSKDALVKRARKLHLYEQGGRLKEPLQKLKD
                     AIGRAMPEQVAKYQDECQAHTQAKVAKMLEEEKDKEQRERICSDEEEDEEKGGRRIMG
                     PRKKFQWNDEIRELLCQVVKIKLESRDLERNSKAQAWEDCVKAFLDAEVKPLWPKGWM
                     QARTLFKESRRGHGHLTSLLAKKKVIAPSKVKTKESSVKPDKKVSIPSGQHGGPTTLL
                     SEHQGGGLNIGANSREHPSQATCGLTDPVPVTLEDSLDEDLVRNPASSVDAVSKELAV
                     LNSRAANSSEFTLPAPSKAPTEKVAGVLCTEEKRNFTKPSSSAPPPTNALQSPLNFLA
                     EQALALGQSSQEKKPEGSGYKELSCQAPLSKGMPELHQSKAKHHSLQRTSHGPQAAAP
                     VPGPQVKVFHAGTQQQKSFTPPSPFVNKLQGPKATSPQCHRSFLQLVKTAAKGQSFHA
                     TMPASSGSSPASSSSSHKTTASNSTTISHPAKLHPASSVGPSYKNNPFAGSISKHGAA
                     SSSTSSGGGAQVQSSVSGTLLPGVQPPSAGQPASRTAPSSAVKKTPVTQKLTLVAPPG
                     GPNGDSGGGTQGVAKLLTSSLKPAAVSSVTSSTSLPKGTGGAVLLSNNSSLSLLSSSY
                     KSNTPKLPGTMNSNSLGIITPFPLHVLSFSADSSAKAGVSKDAIVTGPAPGTFHHGLS
                     HSLLAGLHSSPPHTAPLPHAAVSTHVPQSLPDTSQLHGKGPVVPRKL"
     exon            1049..1135
                     /gene="Ubn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1136..1231
                     /gene="Ubn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1232..1366
                     /gene="Ubn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1367..1470
                     /gene="Ubn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1471..1909
                     /gene="Ubn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1910..1980
                     /gene="Ubn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1981..2110
                     /gene="Ubn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2111..2229
                     /gene="Ubn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2230..2358
                     /gene="Ubn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2359..2505
                     /gene="Ubn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2506..2556
                     /gene="Ubn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2557..2599
                     /gene="Ubn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2600..3823
                     /gene="Ubn1"
                     /inference="alignment:Splign:2.1.0"
     exon            3824..4067
                     /gene="Ubn1"
                     /inference="alignment:Splign:2.1.0"
     exon            4068..4157
                     /gene="Ubn1"
                     /inference="alignment:Splign:2.1.0"
     exon            4158..6379
                     /gene="Ubn1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagcgccgcg ctctcagcgc gtcgaagccc agagactcca agctcctagc cccccacccc
       61 ccggctcgtg acaacgaagc atccgcggtc caaagcagcg gcggcggagg cggcgcggcc
      121 ggactagcgc gaaagggagc cgactgtgct acccgctcgc ttccgggact ctagactcct
      181 ctccagtctt tcttgctgct tccgttacgg ccgttagaca ggcgcgggcc ccgggccgtt
      241 tccgagcctg aggtgccggg cggatgggtg ttgaagtccg ggtgctgccc tgactgaccc
      301 tggtgcggcc tggaagccag tctcggtcca agccccgggc cgaagaggcc ctggttgccc
      361 gcgagcccgc gctcggggcg ggagctccag actgctgagg agcgcccagc tggacagtag
      421 gcttccggag cggcgtcccc gccaagcgtc ctcggcgtcg cccgacttgt tttcttggac
      481 gtggacttgg catatctcgg ctccccccgc tggctgacga gagaaagcgg cagtttgtcg
      541 agaggcttcc ttcccgcgga ctggggaccc ggccatgggc cgcggcgcgg gctctccgcg
      601 cgcccgcctg cagcgctcgg gagcgggccg ctgagccgcg ccgcagccca gggtcccggg
      661 ccggcatgag gaccgccacg gggggacgtc tgcggcccgg gtcggctctg gggacaacgg
      721 tgtgcgccgc ggtctggtcc agcctcccgc gttagccttc aaaccatgca gtgacacctg
      781 ctaagacttg ttggtagcca tgtcggagcc ccacagggtc cagttcacct ctctcccagg
      841 ttctttgaat cctgcattgt taaagaagtc caggaaagag gaggttggag gaacagagca
      901 gcatcaagac tgcgagccag ctgcagcggc tgttcggatt acactcactc tcttcgaacc
      961 cgatcacaag cgctgtccag agttcttcta cccagagctg gtgaagaaca cccgcggaaa
     1021 ggtgaaaggc cttcatcctg gagataagaa aaaagatgtc ttggatcctt tcaatgatga
     1081 agaaaaagaa aggcataagg tggaggccct tgcacggaaa tttgaagaaa aatatggtgg
     1141 aaagaaacgt agaaaagacc gaatacagga tttgattgat atggggtatg gctacgatga
     1201 atcggattct ttcatcgata actctgaggc gtatgatgaa cttgttcctg cttctctgac
     1261 tacaaagtat ggaggatttt acatcaactc aggaaccttg cagtttagac aagcttcaga
     1321 atctgaggat gacttcatta aagaaaagaa gaaaaaatct ccaaagaagc ggaagttgaa
     1381 ggaaggtggt gaaaagataa aaaagaagaa aaaagatgac acttatgaca aggagaagaa
     1441 atcgaaaaag tccaagtttt ccaaagccgg cttcacagcc ctcaatgcca gcaaggagaa
     1501 aaagaagaag aagtactctg ggtcattaag tgttcgagag atgctcaaga aatttcagaa
     1561 ggagaaagag gctcagaaaa agagagagga agaacataag cctgtagctg tgtcatcagt
     1621 agaagctcag ggcctgaggg aactggaggg cacttctgac ccattgctct cactctttgg
     1681 ctctacttct gacaatgact tgctccaagc tgccactgcc atggactccc tgacggattt
     1741 ggacttggag cagctgctca gtgagtctcc agaaggaagc cctttccgag atatggatga
     1801 tggaagtgat tcccttgggg tgggattgga tcaggaattc aggcagccct cctccttccc
     1861 cgaaggcctg ccaacacccc tggagaagcg tgttaaggag ctggctcagg ctgccagagc
     1921 tgcggaggga gacagcaagc agaagttctt cactcaagat attaatggca tcttgctaga
     1981 catagaggta caaacccggg agctgactag ccaaatccgt tctggggtgt ttgcctatct
     2041 ggcttcattc ctgccctgca gcaaggatgc tctggtcaag cgtgctcgga agcttcatct
     2101 ctacgaacag ggtgggcgcc taaaagagcc actccagaag ctcaaggatg ccattggtag
     2161 ggccatgcct gagcaggtgg ccaagtacca ggatgaatgc caagcacaca cacaagcaaa
     2221 ggttgctaag atgctggagg aagagaaaga caaggagcag agagaacgga tttgttctga
     2281 tgaagaagaa gatgaagaaa aggggggccg gagaataatg ggaccccgga agaaattcca
     2341 gtggaatgat gaaatcaggg aacttctttg ccaggtggtg aagatcaagc tggagagccg
     2401 tgatctggag aggaacagca aggcccaggc ctgggaggac tgtgtgaaag cttttctgga
     2461 tgctgaggtc aagcctctct ggcccaaagg ctggatgcag gccaggactc tatttaagga
     2521 gagtcgacga ggccatgggc atctgacatc acttctggcc aagaagaaag taatagcacc
     2581 ctcaaaagtc aagacgaagg aatcatctgt taagcctgac aaaaaagttt ctatcccatc
     2641 aggacagcat ggtggtccca ccactttgct ctcagaacat caaggcggag gcctgaacat
     2701 tggggcaaac agcagggagc atccgtccca ggcaacttgc ggcctcactg accctgttcc
     2761 tgtcaccctg gaggattcac tggatgaaga cttggtccgg aatccagcct cctctgtgga
     2821 tgctgtgtct aaggagctgg ctgtattgaa cagcagagca gccaacagtt ctgaattcac
     2881 actgcctgct ccctccaaag caccaacaga aaaagttgct ggtgttttgt gtacagaaga
     2941 gaaacggaac tttacaaagc ccagctcttc tgcaccaccc cctacgaatg ctctgcagtc
     3001 acctctcaat tttctggctg aacaggctct agcactgggg cagtcctctc aggagaaaaa
     3061 gccagagggt tctggctaca aagagctatc ctgtcaggct ccccttagca agggtatgcc
     3121 tgaattgcac cagtctaaag caaagcacca tagcttgcaa cggacgtctc atggacccca
     3181 ggcagcagct cccgtgcctg gtccccaagt taaagtcttt catgcaggca ctcaacagca
     3241 gaaaagcttc acacccccat ccccatttgt caacaagctt caaggcccaa aggccacctc
     3301 tccacagtgt catcgttcct tcttgcagct ggtaaagaca gcagccaaag gccagtcctt
     3361 ccatgccact atgccagcct cctccggaag ttcaccagcc tccagcagca gttcccataa
     3421 gacgacagcc tcaaattcta ccaccatcag ccatccagca aagctgcatc cagccagctc
     3481 tgtggggcca tcttataaga ataacccttt tgcaggctca atctctaaac atggggctgc
     3541 ttctagcagc acatcgtctg gaggaggagc ccaagtacag agctctgttt ctgggacctt
     3601 gctccctggc gtgcagcctc cctcggcagg acagcctgct agccgaactg ccccaagttc
     3661 tgctgtgaaa aaaacacctg ttactcagaa gctgaccctt gtggctccgc ctggaggtcc
     3721 aaatggagat tctggtggtg ggacccaggg agtggcaaag ttactgacct cctccctgaa
     3781 gcctgctgca gttagtagtg tgacatcgtc tacctccttg ccaaaaggaa ctggcggggc
     3841 agtgctgctg tccaacaact cttctttaag tctgctgtct tcatcctata agtccaacac
     3901 ccccaagctt ccagggacta tgaactcaaa ctcactagga atcataaccc catttccact
     3961 tcatgtactc tccttcagtg cagactcctc tgccaaagca ggagtctcta aggatgccat
     4021 tgtcacaggt ccagcccctg ggaccttcca ccatggcctc agccacagtc ttctggctgg
     4081 cttgcattcc agcccacccc acacagcgcc tctcccacat gctgctgtgt ctacccatgt
     4141 cccacagagt ctgccagata cttcacagct tcatgggaaa gggcctgttg tcccgaggaa
     4201 attgtgacca cgttggagga tggaattgaa tggcataggt ctaggaggaa gcccaacatg
     4261 tatgtctctg ataacagaca tttgctgtgc tcttcttgcc cactgctttt cttctggagc
     4321 aggcatgagt ctgaaatgga gcacttctta gcacttcaga tgggcctcca accaagggca
     4381 gcttctgctg ctcacaaagc acttactgac ctggtgctct aggccttgtg gctttgtcgc
     4441 tggacgacat caaggggcag ctctgtgcgg ggaagtgtgc ctagactgtt gggaagcata
     4501 gtgtacatga gcacctgtgg cagatctgtt ggctactggg ttctagatct gcgtagctcc
     4561 tggcattggt gtgtctcaga gctccctact ggtcagggct cctcctggcc acagtagaat
     4621 ccctggatgg ttgtgactcc atcccatcct caggttatgt gctcaagagg acaagaccca
     4681 ggccagagcc gcatgtgggg aaccttgcaa aattctaaga acacataatg tgtgctcctt
     4741 gtagggagtt tctccttaga gcatgacaat gaagctctca tagagaaaag gatctttata
     4801 gattcaacaa tcgtggtagg atttttaaag acacctatct tgggctgttt gcgtcattac
     4861 cattgaatgc ttggatagaa tgggactgct cttcacacat cacattatag gaagacttaa
     4921 ttccagtgcc tttttggtgg agcagacttt gacaactcac acctatccat tcagcccact
     4981 gaatggatct gagatgaaga tcttttttta aagctagtct gtatttaaga cagttttatt
     5041 taattgggtt ttttaatgac tgcacaccaa cctgtgctgt cctgacttga aagtcatctg
     5101 agcctccaga tcccaggttc ccgtggagct acagctctgg tttgtttttt gtagagttga
     5161 tgcaggtgga ctacagggga gcccctcagc cctctgtgtc tgagagccca ggggttccaa
     5221 gccacaggta gacattccac tttgtcttac tcttagaaat ctctctctgg cagagccgaa
     5281 ggacaggcct ctctgaagta tctgccacag agaagaggtc tggggtgctg gtgctttcta
     5341 gacagcgagc ttctgtgtgg acttaggagg gatgtccaga gggtctggag agtagacaga
     5401 gatcaaagac agagatcaaa gagcttccat tgttgggcta tcacacttag ccagtggcta
     5461 tttcatatga acttggaggg ctcttgccta acctgtaaat ctgcctcaca gtgggtctgg
     5521 ctgactgcct agccagacaa catttgggga ggtgatcact cagtatgcac cctagggtgg
     5581 gtcaagtgtg cttttggttc ctgcctcaag ggtgtggagc tcagtagctc tctattcctg
     5641 tggaggtgtc cacctttcca ccttactggg agcaagacct ttgtcagctc tttggtctag
     5701 cctctgctct gactcctttt gtatggaaga accaactgtt ttcacattgg ccatgtggat
     5761 tccttatcct tttattacat atattttttg caacatggat ttccagtttg tttacagaat
     5821 agtcttaggt agtagcaaaa agagccaaag aagagatttg tatagctgag ctctaagccg
     5881 agctgaggct gcccgcaaag ctgagcagtg ggaactctcc aggctcctct gcccgtcaaa
     5941 caacgggccc tagcacccca cccctttggt gctccctcct ccccatgtcc actgcttgtg
     6001 cagctagagc aggatgccct catctttagg aatccagcga tgcctcttgc ctcagggaaa
     6061 cgtttctttg atggggagtt tatgagattt cttttccttg tttatgcttt atttgtggta
     6121 atgaacgagt gaatgactta aacagccatg gccagggaga cctgcggccc ggcttcagca
     6181 gagggtggag gtagagcaag ctcagtggga tgcaagggtt tctttggtgg gtgcaaggtt
     6241 ctgagactta accaggcgtg gccgtttctt aggtgtgaga ggggcttttg tgccgcaact
     6301 atgttggtgt tagggggtgg tatggaaatt gttaatcttg tataaagcaa ctcaataaat
     6361 tgttttgagg tttccaaaa
//
