LOCUS       NM_001413520            2978 bp    mRNA    linear   ROD 15-APR-2024
DEFINITION  Rattus norvegicus ubiquitin-like 7 (Ubl7), transcript variant 3,
            mRNA.
ACCESSION   NM_001413520
VERSION     NM_001413520.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2978)
  AUTHORS   Liu,S., Yu,Y., An,H., Li,N., Lin,N., Wang,W., Zhang,W., Wan,T. and
            Cao,X.
  TITLE     Cloning and identification of a novel ubiquitin-like protein,
            BMSC-UbP, from human bone marrow stromal cells
  JOURNAL   Immunol Lett 86 (2), 169-175 (2003)
   PUBMED   12644319
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.1969844.1,
                                           SRR26360172.2999091.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-11                JAXUCZ010000008.1  67217151-67217161
            12-224              JAXUCZ010000008.1  67218611-67218823
            225-344             JAXUCZ010000008.1  67220227-67220346
            345-427             JAXUCZ010000008.1  67224318-67224400
            428-512             JAXUCZ010000008.1  67225035-67225119
            513-570             JAXUCZ010000008.1  67225486-67225543
            571-704             JAXUCZ010000008.1  67226591-67226724
            705-754             JAXUCZ010000008.1  67226941-67226990
            755-922             JAXUCZ010000008.1  67227214-67227381
            923-1048            JAXUCZ010000008.1  67227919-67228044
            1049-2978           JAXUCZ010000008.1  67234295-67236224
FEATURES             Location/Qualifiers
     source          1..2978
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..2978
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /note="ubiquitin-like 7"
                     /db_xref="GeneID:300744"
                     /db_xref="RGD:1303055"
     exon            1..11
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     exon            12..224
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     CDS             41..1186
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /note="isoform 1 is encoded by transcript variant 3; bone
                     marrow stromal cell-derived ubiquitin-like protein;
                     ubiquitin-like protein 7; ubiquitin-like 7 (bone marrow
                     stromal cell-derived)"
                     /codon_start=1
                     /product="ubiquitin-like protein 7 isoform 1"
                     /protein_id="NP_001400449.1"
                     /db_xref="GeneID:300744"
                     /db_xref="RGD:1303055"
                     /translation="MSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLK
                     QLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSWPEPDQKPE
                     PVDKVAALREFRVLHTALHSSSSYREAVFKMLNNKESLDQIIVATPGLSSDPIALGVL
                     QDKDLFSVFADPNMLDTLVPAHPALVNAIILVLHSVAGSTPMPGADSSSRSMPSSSYR
                     DMPGGFLFDGLSDDEDDFHPSTRSTPSSSTPSSRPASLGYSGAAGPRPITQSELATAL
                     ALASTPESSSHTPTPGTQGHSSGTSPMSSGVQSGTPITNDLFSQALQHALQASGQQPS
                     LQSQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGGAP"
     exon            225..344
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     exon            345..427
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     exon            428..512
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     exon            513..570
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     exon            571..704
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     exon            705..754
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     exon            755..922
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     exon            923..1048
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     exon            1049..2978
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaggaccag aggagaaaga gagagcgaga gagagagagg atgtctctct cagactggca
       61 cttggcagtg aagctggctg accagccact tgctcccaaa tctattcttc agttgccaga
      121 gacagaactg ggagaatatt ccctcggggg ctatagcatt tcgtttctaa agcagcttat
      181 tgctggcaag ctccaggaat ctgttccaga cccggagctg atagatttga tctactgtgg
      241 ccggaagctt aaagatgacc agactcttga cttctatggt attcagcctg gatccacagt
      301 tcatgttctc cgaaaatctt ggcctgagcc tgatcagaaa cctgaaccag tggacaaagt
      361 ggctgccctg agagagttcc gagtcctgca cactgccctg cacagcagct cttcctacag
      421 agaggcagtc tttaagatgc tcaacaataa agaatctctg gatcagatca tcgtggcaac
      481 cccaggcctc agcagtgacc ccattgctct aggggttctc caggataagg acctcttctc
      541 tgtctttgct gatcccaaca tgctagatac attggtgcct gctcacccag ccctagtcaa
      601 tgccatcatc ctggttctgc actctgtagc aggcagcacc ccaatgccag gagctgattc
      661 ctcttcccga agcatgccct ccagctccta ccgagatatg ccaggtggtt tcctgtttga
      721 cgggctctca gatgacgagg acgacttcca cccaagcact cggtccacac cctctagcag
      781 tacacccagc tcccgccccg cctctctggg atacagtgga gctgcagggc cccgccccat
      841 cacccagagc gagctggcca ctgccctggc cctggccagt actccagaga gcagttctca
      901 tacaccaact cctggcaccc aggggcactc ttcgggcacc tcgccaatgt cctctggtgt
      961 ccagtcaggg acacccatca ccaacgatct ttttagccaa gccctccagc atgccctgca
     1021 ggcctctggg cagcagccca gccttcagag ccagtggcag cctcagctgc agcagttgcg
     1081 tgatatgggc atccaggatg acgagctgag cctccgggcc cttcaggcca ctggaggtga
     1141 catccaagca gctctggaac tcatctttgc tggaggagcc ccatgaactt cttgtaccca
     1201 aacacctagc aaattgcgga agctattcct ggcaggaggc acttgtgaag ttgcttctag
     1261 atcccacccc aaccccaccc aatatatctg atgctcccct cgcctgctgt gtccagtgct
     1321 tgaccttcct attgatctca actgggggga gcagcttggc aagcaagatg tatggttttg
     1381 gaactgtggt gtcagggttc agattgatcc ttacttggtt tagatcctga gtaagagagt
     1441 tggggccagt gtcatggggg tgctgtgtaa tacccatgtt caccttagac gagtccctag
     1501 caatagcccc catctacttg gtgctttaga gcctgaggct gaagcaagct acagcccagt
     1561 cttcagggta gttgctcatt acagagaagg ccagaagaga ctgtgacctc tgacaaaagt
     1621 ctggggagtg accaggtgga ttctgatgtg gcagaagaga atatttgtca gatgattcca
     1681 tgtccctaca ctggctgtgt ctcaccaaac atcctttgat atatgttctg taattcagta
     1741 ctcacaccgg gccaggaaac gcatcccttt cctgtgtcct aaaggcataa tgataagagc
     1801 agttaaaaat aatactgcac tagcagtaca gacagctgga ctttaatact gaggagagcc
     1861 ccagctgctt actgtctgta ctctggttct gagacagtcc ctgcagcatc acagacgtgt
     1921 ccaagttgac caaatgggtt tcatgtgctc cagatctgtt agggggaaat gtctatgcct
     1981 tcaatagttc ttggactcat ttggagctga tgtggcaggc aggagctcag aagtctgtcc
     2041 cagctttggc cttggcaaac attccattca caccatctcc agttgtggcc atgtggcccc
     2101 tgcttgtctc ctccctccgt tctcttactc tgcttgaggc ttctgagctc gtgcatccct
     2161 ttctgctgca gaacatttgg gtgtctttgc tctttctgga acaactcttg gtacctgtta
     2221 cacagcttcc cagaattgaa ctgaacacag tttcccttgt ttgtcaggtc tttcctccat
     2281 gggcttggca ccttggcttt gcttcctgtg gtcatatttt aaacagtcca tgttgggcct
     2341 gataagtgcc ccactgagcc ggggctttcc atgggctgag gactccttcc ttgtgctttt
     2401 ccctctttca acaaacagtg agcctccatg tcatgtaaac atggtgacct ccttgctcct
     2461 caagaactgt gctattggaa agacaggtag accttgccca ctaaaccctc atgatagctg
     2521 ggccacacaa ggcccaggtt gagtgggcaa ctcatgggga aggaagctca cttagattag
     2581 tagtgtctgt gttaggagag tccacctgga gaaagtggta ttggagtcag attggaaggt
     2641 taaggaagga aatgtatgtg ctgtgtggcc agccatagag aggggttgcc cttgtggacc
     2701 tgttggtgta gaaaggaagt cagggaccac aggagtcaga attgtaacta gggaagcagc
     2761 tttgcatcct agataggtca ttctggcttc tggtaggtaa gtggattggc gatagcaaga
     2821 gagaagggtg aaaaggttga ggcagtgggc cactttgatt agcagaggtc cggcctggca
     2881 gtagagaaga tcttggggga tagttgccat gatcaaaaca gacttcaacc tttgggagtg
     2941 tactactagc attgccatta aacagatgga gaaaacaa
//
