LOCUS       NM_001004247            3030 bp    mRNA    linear   ROD 15-APR-2024
DEFINITION  Rattus norvegicus ubiquitin-like 7 (Ubl7), transcript variant 1,
            mRNA.
ACCESSION   NM_001004247 XM_217148
VERSION     NM_001004247.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3030)
  AUTHORS   Liu,S., Yu,Y., An,H., Li,N., Lin,N., Wang,W., Zhang,W., Wan,T. and
            Cao,X.
  TITLE     Cloning and identification of a novel ubiquitin-like protein,
            BMSC-UbP, from human bone marrow stromal cells
  JOURNAL   Immunol Lett 86 (2), 169-175 (2003)
   PUBMED   12644319
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Nov 3, 2022 this sequence version replaced NM_001004247.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.1893359.1,
                                           SRR26360186.775379.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-63                JAXUCZ010000008.1  67217259-67217321
            64-276              JAXUCZ010000008.1  67218611-67218823
            277-396             JAXUCZ010000008.1  67220227-67220346
            397-479             JAXUCZ010000008.1  67224318-67224400
            480-564             JAXUCZ010000008.1  67225035-67225119
            565-622             JAXUCZ010000008.1  67225486-67225543
            623-756             JAXUCZ010000008.1  67226591-67226724
            757-806             JAXUCZ010000008.1  67226941-67226990
            807-974             JAXUCZ010000008.1  67227214-67227381
            975-1100            JAXUCZ010000008.1  67227919-67228044
            1101-3030           JAXUCZ010000008.1  67234295-67236224
FEATURES             Location/Qualifiers
     source          1..3030
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..3030
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /note="ubiquitin-like 7"
                     /db_xref="GeneID:300744"
                     /db_xref="RGD:1303055"
     exon            1..63
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     exon            64..276
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     CDS             93..1238
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /note="isoform 1 is encoded by transcript variant 1; bone
                     marrow stromal cell-derived ubiquitin-like protein;
                     ubiquitin-like protein 7; ubiquitin-like 7 (bone marrow
                     stromal cell-derived)"
                     /codon_start=1
                     /product="ubiquitin-like protein 7 isoform 1"
                     /protein_id="NP_001004247.1"
                     /db_xref="GeneID:300744"
                     /db_xref="RGD:1303055"
                     /translation="MSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLK
                     QLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSWPEPDQKPE
                     PVDKVAALREFRVLHTALHSSSSYREAVFKMLNNKESLDQIIVATPGLSSDPIALGVL
                     QDKDLFSVFADPNMLDTLVPAHPALVNAIILVLHSVAGSTPMPGADSSSRSMPSSSYR
                     DMPGGFLFDGLSDDEDDFHPSTRSTPSSSTPSSRPASLGYSGAAGPRPITQSELATAL
                     ALASTPESSSHTPTPGTQGHSSGTSPMSSGVQSGTPITNDLFSQALQHALQASGQQPS
                     LQSQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGGAP"
     exon            277..396
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     exon            397..479
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     exon            480..564
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     exon            565..622
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     exon            623..756
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     exon            757..806
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     exon            807..974
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     exon            975..1100
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
     exon            1101..3030
                     /gene="Ubl7"
                     /gene_synonym="Bmsc-UbP"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagtagcta actggtccca cgagagaggt ggggttgtca acactgtccc tactcacgac
       61 tagggagaaa gagagagcga gagagagaga ggatgtctct ctcagactgg cacttggcag
      121 tgaagctggc tgaccagcca cttgctccca aatctattct tcagttgcca gagacagaac
      181 tgggagaata ttccctcggg ggctatagca tttcgtttct aaagcagctt attgctggca
      241 agctccagga atctgttcca gacccggagc tgatagattt gatctactgt ggccggaagc
      301 ttaaagatga ccagactctt gacttctatg gtattcagcc tggatccaca gttcatgttc
      361 tccgaaaatc ttggcctgag cctgatcaga aacctgaacc agtggacaaa gtggctgccc
      421 tgagagagtt ccgagtcctg cacactgccc tgcacagcag ctcttcctac agagaggcag
      481 tctttaagat gctcaacaat aaagaatctc tggatcagat catcgtggca accccaggcc
      541 tcagcagtga ccccattgct ctaggggttc tccaggataa ggacctcttc tctgtctttg
      601 ctgatcccaa catgctagat acattggtgc ctgctcaccc agccctagtc aatgccatca
      661 tcctggttct gcactctgta gcaggcagca ccccaatgcc aggagctgat tcctcttccc
      721 gaagcatgcc ctccagctcc taccgagata tgccaggtgg tttcctgttt gacgggctct
      781 cagatgacga ggacgacttc cacccaagca ctcggtccac accctctagc agtacaccca
      841 gctcccgccc cgcctctctg ggatacagtg gagctgcagg gccccgcccc atcacccaga
      901 gcgagctggc cactgccctg gccctggcca gtactccaga gagcagttct catacaccaa
      961 ctcctggcac ccaggggcac tcttcgggca cctcgccaat gtcctctggt gtccagtcag
     1021 ggacacccat caccaacgat ctttttagcc aagccctcca gcatgccctg caggcctctg
     1081 ggcagcagcc cagccttcag agccagtggc agcctcagct gcagcagttg cgtgatatgg
     1141 gcatccagga tgacgagctg agcctccggg cccttcaggc cactggaggt gacatccaag
     1201 cagctctgga actcatcttt gctggaggag ccccatgaac ttcttgtacc caaacaccta
     1261 gcaaattgcg gaagctattc ctggcaggag gcacttgtga agttgcttct agatcccacc
     1321 ccaaccccac ccaatatatc tgatgctccc ctcgcctgct gtgtccagtg cttgaccttc
     1381 ctattgatct caactggggg gagcagcttg gcaagcaaga tgtatggttt tggaactgtg
     1441 gtgtcagggt tcagattgat ccttacttgg tttagatcct gagtaagaga gttggggcca
     1501 gtgtcatggg ggtgctgtgt aatacccatg ttcaccttag acgagtccct agcaatagcc
     1561 cccatctact tggtgcttta gagcctgagg ctgaagcaag ctacagccca gtcttcaggg
     1621 tagttgctca ttacagagaa ggccagaaga gactgtgacc tctgacaaaa gtctggggag
     1681 tgaccaggtg gattctgatg tggcagaaga gaatatttgt cagatgattc catgtcccta
     1741 cactggctgt gtctcaccaa acatcctttg atatatgttc tgtaattcag tactcacacc
     1801 gggccaggaa acgcatccct ttcctgtgtc ctaaaggcat aatgataaga gcagttaaaa
     1861 ataatactgc actagcagta cagacagctg gactttaata ctgaggagag ccccagctgc
     1921 ttactgtctg tactctggtt ctgagacagt ccctgcagca tcacagacgt gtccaagttg
     1981 accaaatggg tttcatgtgc tccagatctg ttagggggaa atgtctatgc cttcaatagt
     2041 tcttggactc atttggagct gatgtggcag gcaggagctc agaagtctgt cccagctttg
     2101 gccttggcaa acattccatt cacaccatct ccagttgtgg ccatgtggcc cctgcttgtc
     2161 tcctccctcc gttctcttac tctgcttgag gcttctgagc tcgtgcatcc ctttctgctg
     2221 cagaacattt gggtgtcttt gctctttctg gaacaactct tggtacctgt tacacagctt
     2281 cccagaattg aactgaacac agtttccctt gtttgtcagg tctttcctcc atgggcttgg
     2341 caccttggct ttgcttcctg tggtcatatt ttaaacagtc catgttgggc ctgataagtg
     2401 ccccactgag ccggggcttt ccatgggctg aggactcctt ccttgtgctt ttccctcttt
     2461 caacaaacag tgagcctcca tgtcatgtaa acatggtgac ctccttgctc ctcaagaact
     2521 gtgctattgg aaagacaggt agaccttgcc cactaaaccc tcatgatagc tgggccacac
     2581 aaggcccagg ttgagtgggc aactcatggg gaaggaagct cacttagatt agtagtgtct
     2641 gtgttaggag agtccacctg gagaaagtgg tattggagtc agattggaag gttaaggaag
     2701 gaaatgtatg tgctgtgtgg ccagccatag agaggggttg cccttgtgga cctgttggtg
     2761 tagaaaggaa gtcagggacc acaggagtca gaattgtaac tagggaagca gctttgcatc
     2821 ctagataggt cattctggct tctggtaggt aagtggattg gcgatagcaa gagagaaggg
     2881 tgaaaaggtt gaggcagtgg gccactttga ttagcagagg tccggcctgg cagtagagaa
     2941 gatcttgggg gatagttgcc atgatcaaaa cagacttcaa cctttgggag tgtactacta
     3001 gcattgccat taaacagatg gagaaaacaa
//
