LOCUS       NM_001106346            2365 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ubiquitin-like 4A (Ubl4a), mRNA.
ACCESSION   NM_001106346 XM_001055202 XM_215228
VERSION     NM_001106346.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2365)
  AUTHORS   Topalidou,I., Cattin-Ortola,J., Pappas,A.L., Cooper,K.,
            Merrihew,G.E., MacCoss,M.J. and Ailion,M.
  TITLE     The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo
            Sorting to Dense-Core Vesicles
  JOURNAL   PLoS Genet 12 (5), e1006074 (2016)
   PUBMED   27191843
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2365)
  AUTHORS   Mock,J.Y., Chartron,J.W., Zaslaver,M., Xu,Y., Ye,Y. and
            Clemons,W.M. Jr.
  TITLE     Bag6 complex contains a minimal tail-anchor-targeting module and a
            mock BAG domain
  JOURNAL   Proc Natl Acad Sci U S A 112 (1), 106-111 (2015)
   PUBMED   25535373
REFERENCE   3  (bases 1 to 2365)
  AUTHORS   Xu,Y., Cai,M., Yang,Y., Huang,L. and Ye,Y.
  TITLE     SGTA recognizes a noncanonical ubiquitin-like domain in the
            Bag6-Ubl4A-Trc35 complex to promote endoplasmic
            reticulum-associated degradation
  JOURNAL   Cell Rep 2 (6), 1633-1644 (2012)
   PUBMED   23246001
REFERENCE   4  (bases 1 to 2365)
  AUTHORS   Wang,Q., Liu,Y., Soetandyo,N., Baek,K., Hegde,R. and Ye,Y.
  TITLE     A ubiquitin ligase-associated chaperone holdase maintains
            polypeptides in soluble states for proteasome degradation
  JOURNAL   Mol Cell 42 (6), 758-770 (2011)
   PUBMED   21636303
REFERENCE   5  (bases 1 to 2365)
  AUTHORS   Mariappan,M., Li,X., Stefanovic,S., Sharma,A., Mateja,A.,
            Keenan,R.J. and Hegde,R.S.
  TITLE     A ribosome-associating factor chaperones tail-anchored membrane
            proteins
  JOURNAL   Nature 466 (7310), 1120-1124 (2010)
   PUBMED   20676083
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC166513.1.
            
            On Apr 29, 2008 this sequence version replaced NM_001106346.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166513.1, FN802588.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00155305, SAMD00155325
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2365
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq37"
     gene            1..2365
                     /gene="Ubl4a"
                     /gene_synonym="RGD1563983; Ubl4"
                     /note="ubiquitin-like 4A"
                     /db_xref="GeneID:293864"
                     /db_xref="RGD:1563983"
     exon            1..124
                     /gene="Ubl4a"
                     /gene_synonym="RGD1563983; Ubl4"
                     /inference="alignment:Splign:2.1.0"
     CDS             77..550
                     /gene="Ubl4a"
                     /gene_synonym="RGD1563983; Ubl4"
                     /note="ubiquitin-like 4"
                     /codon_start=1
                     /product="ubiquitin-like protein 4A"
                     /protein_id="NP_001099816.1"
                     /db_xref="GeneID:293864"
                     /db_xref="RGD:1563983"
                     /translation="MQLTVKALQGRECSLQVAEDELVSTLKHLVSDKLNVPVRQQRLL
                     FKGKALADEKRLSDYNIGPNSKLNLVVKPLEKVLLEEGSAHRLVDSSATPIWQLISKV
                     LARHFSIGDASRVLEQLQRDYDRSLSRLTLDDIERLASRFLHPEVTEAMEKGFCK"
     exon            125..230
                     /gene="Ubl4a"
                     /gene_synonym="RGD1563983; Ubl4"
                     /inference="alignment:Splign:2.1.0"
     exon            231..439
                     /gene="Ubl4a"
                     /gene_synonym="RGD1563983; Ubl4"
                     /inference="alignment:Splign:2.1.0"
     exon            440..2333
                     /gene="Ubl4a"
                     /gene_synonym="RGD1563983; Ubl4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcgcccggg gcagcgtcgc gcagtaggag accgttgggg tttgcgttgg ccgtagtgga
       61 cggtgcggtg gacaccatgc agctgaccgt gaaagcgctc cagggcaggg agtgcagcct
      121 acaggtggcg gaggacgagc tagtgtctac actgaagcac ctggtctcgg ataagctgaa
      181 tgtccctgtg cgccagcaac gtctgctgtt caagggcaag gccctagcag atgagaagcg
      241 actgtcagat tacaacattg ggcccaattc taagctcaac ctagttgtta agcctttgga
      301 gaaggtgcta ctggaagaag ggtctgccca cagactggtc gactcctcag ccacccctat
      361 ctggcagctg atctccaaag tcctggctcg tcacttcagt ataggagatg ccagcagggt
      421 cctggaacaa ctacagaggg attatgacag gtccttgagc cgcctaacac tggatgacat
      481 cgaacgtttg gccagccgct ttctacaccc tgaagtgact gaggccatgg aaaaggggtt
      541 ctgcaaatag cattgtggga ttgtggggag aaatcccagg tcaggccaca gctgcatgtt
      601 gcattaaatg tgttctcatg tcgcagtttg gctcatagtg ataataatag ctggtatgta
      661 tccggctctt gctaggtgct acatactcag agtacatggc ctgagttctc ttctgcctcc
      721 cacagccaag ttgaggcttc actgtagaga cacctagcaa tggcttgtga caggcagggt
      781 ccaagtctag acagcctgta gaagtgcctc tggaggagaa agagtgtgat gttttgagag
      841 atgggcctta gcattccctt tagcccactc agcatacacc ctcaaaagac tccctcagga
      901 agccactaat ccctgtcacc tgccctctag tatatctgtc atagcccttg gcaaatctcc
      961 ataggaagcc aagtgatagc tatccagggc ccctccactg ctgcagccag tgtgctcttg
     1021 aataacaagc aggttagggg ctggaggatc agaaagatac cccagctcca ttcttgagtc
     1081 aacttctgtg ctactttggt ccccaaccaa agtgagtcta gtctgttcca tgttagccac
     1141 ttctctgacc tgaataagtt tccttcccct ttctcagctc aaggtaggag tctctgctct
     1201 catcacctgc agttccatca tgtgttcagt aagcaaactg aagtcaaaag tgaagtgata
     1261 gccaagcatg ggccactgga tgaagtatcc tgggcctttg taacatagct cttctccgga
     1321 ggagggacac cctatctgct tggctcctcc tggcagtaag tctcacccac aagggacaac
     1381 cagtgattca gcaaggcagt gtcacaacta ggactctctg ccttggtctc cttaccaagt
     1441 gttcacccac agtatgggac ggatgcttcc tctgcccctg tatacagggg cttttacttt
     1501 gcacaccttc attgcttaag aaggaactca gggtgctgag aaagagaaat atatactgaa
     1561 gacagtgatt cctcttttca ctgtacctat gtctgggtgc taaaggtcat gtaagtacta
     1621 gctcctttga ggaggatccc tgggagcagt caagctagaa gatagtcacc tgcaggacac
     1681 tactgtcctt ccacttttgc taggaaagcc actctactct gaatgttctt gggctacact
     1741 tgcctttcct gcccactggc ctcctgcata ggccttgtgg atcaaatctt gagtacagga
     1801 atataaagta aggcctgtgg ggatgttcag gtgatgatag accctggtat tcctaagacc
     1861 tggggtacca catcggggac ctgcttgtga gcttatgtag agagtggcag ctcagataat
     1921 gagcttgcca atgaccttgt tcactttgag tcagggaatg tatttataaa attaacacta
     1981 aagatgcatg tgagatgttt caccaaaagg aactctatta ataagctaga gtgcttttga
     2041 tttacaataa ttggtttaag aacagtaaac ttactggctt ataaaactga aaaagcctag
     2101 gagtactggc agtggatgaa caatttcacc aaacatccag cttttttcct gcctccctct
     2161 gaattctcca ggatctgctt catcctcacc accacttcca aggatcaaag ctgtctacag
     2221 cttcatcaaa atcttttatt cactgccagt gaggagcact ttctctctgt agcatagctt
     2281 ctgtctcaga tgccccagca aataaatgct gtctcttatt ggtcataact gaaaaaaaaa
     2341 aaaaaaaaaa aaaaaaaaaa aaaaa
//
