LOCUS       NM_001034911            1235 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus ubiquitin family domain containing 1 (Ubfd1),
            mRNA.
ACCESSION   NM_001034911 XM_215053
VERSION     NM_001034911.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1235)
  AUTHORS   Guo Z, Neilson LJ, Zhong H, Murray PS, Zanivan S and Zaidel-Bar R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1235)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC101866.1 and CK839597.1.
            
            On Oct 21, 2005 this sequence version replaced XM_215053.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-829               BC101866.1         1-829
            830-1235            CK839597.1         1-406               c
FEATURES             Location/Qualifiers
     source          1..1235
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q36"
     gene            1..1235
                     /gene="Ubfd1"
                     /gene_synonym="RGD1306614; Ubph"
                     /note="ubiquitin family domain containing 1"
                     /db_xref="GeneID:293454"
                     /db_xref="RGD:1306614"
     exon            1..35
                     /gene="Ubfd1"
                     /gene_synonym="RGD1306614; Ubph"
                     /inference="alignment:Splign:2.1.0"
     CDS             11..940
                     /gene="Ubfd1"
                     /gene_synonym="RGD1306614; Ubph"
                     /note="ubiquitin-binding protein homolog"
                     /codon_start=1
                     /product="ubiquitin domain-containing protein UBFD1"
                     /protein_id="NP_001030083.1"
                     /db_xref="GeneID:293454"
                     /db_xref="RGD:1306614"
                     /translation="MAAAGAPDGMEEPSMDTEAEAVATEAPARPLNCVEAEAVVGTAA
                     EDSCDARGNLQPAPAQPPGDPAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKVP
                     LDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDV
                     LAVNTPKDAAQQDAKAEESKKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPTVPL
                     SGMYNKSGGKVRLTFKLEQDQLWIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMAFQ
                     LGPTEASYYWVYWVPTQYVDAIKDTVLGKWQYF"
     exon            36..365
                     /gene="Ubfd1"
                     /gene_synonym="RGD1306614; Ubph"
                     /inference="alignment:Splign:2.1.0"
     exon            366..574
                     /gene="Ubfd1"
                     /gene_synonym="RGD1306614; Ubph"
                     /inference="alignment:Splign:2.1.0"
     exon            575..640
                     /gene="Ubfd1"
                     /gene_synonym="RGD1306614; Ubph"
                     /inference="alignment:Splign:2.1.0"
     exon            641..746
                     /gene="Ubfd1"
                     /gene_synonym="RGD1306614; Ubph"
                     /inference="alignment:Splign:2.1.0"
     exon            747..829
                     /gene="Ubfd1"
                     /gene_synonym="RGD1306614; Ubph"
                     /inference="alignment:Splign:2.1.0"
     exon            830..1221
                     /gene="Ubfd1"
                     /gene_synonym="RGD1306614; Ubph"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cacaatcatc atggcggcgg ccggagcccc ggatggcatg gaggagccaa gcatggacac
       61 ggaggccgag gctgtggcca ccgaggcacc cgcacggccc ctcaactgcg tggaggccga
      121 agcagtcgta gggacagcgg cggaggactc ctgcgacgcg cgaggcaacc tgcagccggc
      181 cccggcccag ccccctgggg accctgcggc ccaggcctcg gtcagcaacg gtgaggacgc
      241 gggtggcggt gcgggcagag agctggtgga tctgaagata atctggaaca agaccaagca
      301 cgacgtgaag gttcctctgg acagcacggg ttccgagcta aagcagaaga ttcactccat
      361 tacaggtctc ccacccgcca tgcagaaagt catgtataag ggacttgttc ctgaagacaa
      421 gacgttgaga gaaataaaag tgaccagtgg ggccaagatc atggtggttg gctccactat
      481 aaatgatgtt ttagcagtaa acaccccaaa agatgctgcc cagcaggatg caaaggctga
      541 agaaagcaag aaggagcccc tctgcaggca gaagcaacac aggaaagtgt tggacaaagg
      601 aaaacctgaa gatgtgatgc catctgttaa gggtgcccag gagcgcctgc caacggtacc
      661 cttgtctggc atgtacaata agtctggagg gaaagtgaga ctgaccttta agctagagca
      721 agaccagctg tggatcggca ctaaagagcg gactgagaaa ctgcccatgg gctccattaa
      781 aaatgttgtc agtgaaccta ttgaaggaca tgaagactac cacatgatgg cgtttcagtt
      841 gggccccacg gaagcctctt actactgggt gtactgggtt ccaactcaat atgtggatgc
      901 aatcaaagac actgtgctgg gcaagtggca gtatttttga aagcactttc acctctggcc
      961 caggagactg acccaaagtg aaggacattg ccgggagagg tccgcagcat ccctggattg
     1021 cagagttctg ggactttgtt cacacacaca cacaaaaatc tctattcaat ctgaggtgat
     1081 gtggtgactg aagccagagg tgatgtactt tcaccattag cttaatttga acttaaaatc
     1141 accggttccc tttcttgcag tcagcttcat accgttttta aagtcagtat ggtggaaatt
     1201 aataaatcca agtttcgaac aaaaaaaaaa aaaaa
//
