LOCUS       NM_001039610            1883 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus ubiquitin protein ligase E3D (Ube3d), mRNA.
ACCESSION   NM_001039610
VERSION     NM_001039610.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1883)
  AUTHORS   Kobirumaki,F., Miyauchi,Y., Fukami,K. and Tanaka,H.
  TITLE     A novel UbcH10-binding protein facilitates the ubiquitinylation of
            cyclin B in vitro
  JOURNAL   J Biochem 137 (2), 133-139 (2005)
   PUBMED   15749827
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC101916.1.
            
            [WARNING] On Oct 7, 2024 this sequence was replaced by
            NM_001039610.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC101916.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1883
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q31"
     gene            1..1883
                     /gene="Ube3d"
                     /gene_synonym="RGD1306773; Ube2cbp"
                     /note="ubiquitin protein ligase E3D"
                     /db_xref="GeneID:315863"
                     /db_xref="RGD:1306773"
     exon            1..198
                     /gene="Ube3d"
                     /gene_synonym="RGD1306773; Ube2cbp"
                     /inference="alignment:Splign:2.1.0"
     CDS             122..1234
                     /gene="Ube3d"
                     /gene_synonym="RGD1306773; Ube2cbp"
                     /EC_number="2.3.2.26"
                     /note="UbcH10 binding protein with a hect-like domain;
                     ubiquitin-conjugating enzyme E2C-binding protein;
                     ubcH10-binding protein with a HECT-like domain; HECT-type
                     E3 ubiquitin transferase E3D"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase E3D"
                     /protein_id="NP_001034699.1"
                     /db_xref="GeneID:315863"
                     /db_xref="RGD:1306773"
                     /translation="MAVVEAETRVFLEVRRRLQSALLILGEPDEGGMNLDISVTPTSL
                     LMRSPDGCTEIRLPAGVRLAPSSCGGLQYISGDGLHLRLRAQAESSPQPISGFNQSLQ
                     AQECCSFYCQSCGEVTIKDRKLLRVLPLPSENWSALVGEWCCHPDPFANKPLHPREND
                     CFVGDSFFLVNSRSDLEQEPKANTKVICKRCKVMLGETVSSETTKFYMTEVIVQPSEG
                     SFPNIPRSQFVQSVIARCLVELCTARSTFRFTIQGQDGKVYILLWVLNSDSLVMEPLS
                     SSGCIRKFPLLEDSLEADSGSAWNAIKVLYQPCIKSRNKELASSWEGDISVHPLTLPS
                     TTCLELLLILSRNNASLPLSLRQMNSFQLWCSHCKT"
     exon            199..395
                     /gene="Ube3d"
                     /gene_synonym="RGD1306773; Ube2cbp"
                     /inference="alignment:Splign:2.1.0"
     exon            396..486
                     /gene="Ube3d"
                     /gene_synonym="RGD1306773; Ube2cbp"
                     /inference="alignment:Splign:2.1.0"
     exon            487..655
                     /gene="Ube3d"
                     /gene_synonym="RGD1306773; Ube2cbp"
                     /inference="alignment:Splign:2.1.0"
     exon            656..725
                     /gene="Ube3d"
                     /gene_synonym="RGD1306773; Ube2cbp"
                     /inference="alignment:Splign:2.1.0"
     exon            726..795
                     /gene="Ube3d"
                     /gene_synonym="RGD1306773; Ube2cbp"
                     /inference="alignment:Splign:2.1.0"
     exon            796..904
                     /gene="Ube3d"
                     /gene_synonym="RGD1306773; Ube2cbp"
                     /inference="alignment:Splign:2.1.0"
     exon            905..1068
                     /gene="Ube3d"
                     /gene_synonym="RGD1306773; Ube2cbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1069..1207
                     /gene="Ube3d"
                     /gene_synonym="RGD1306773; Ube2cbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1208..1274
                     /gene="Ube3d"
                     /gene_synonym="RGD1306773; Ube2cbp"
                     /inference="alignment:Splign:2.1.0"
     exon            1275..1857
                     /gene="Ube3d"
                     /gene_synonym="RGD1306773; Ube2cbp"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcctggccg ccgcgctgcc tccgccagga agccagcggc ttgccacggc cgcacgtgct
       61 cccacccagt cccagttctg gtaactgcgg gctcggtccc gcgtgggccc ctgagtcggc
      121 catggcggtg gttgaggcgg aaacacgcgt gttcctggaa gtgcggagac ggctccagag
      181 cgcgctgcta atcctggggg agccagatga aggagggatg aacctggaca tatccgtaac
      241 gcctacctct cttttgatga gaagccctga cggctgcacc gagatccggc ttccagcagg
      301 ggtcagactt gcaccttcct cgtgcggcgg gctgcagtac atcagtggag atggtttaca
      361 cctgcgcctg cgggcccagg ctgaatccag cccacagccg atttcagggt ttaatcaaag
      421 cttgcaagcc caagaatgtt gctcatttta ttgccagtcc tgtggtgaag tcacgataaa
      481 ggacaggaag ctcctcaggg tgctccccct gcccagtgag aactggagcg ctctggttgg
      541 agagtggtgc tgtcatcccg accccttcgc taataagcct ctccatccac gggagaatga
      601 ctgttttgtt ggggattctt tctttttagt gaattcgaga agtgatttgg agcaggaacc
      661 aaaagcaaat accaaagtca tttgtaagcg ttgcaaggta atgttgggag agaccgtatc
      721 atcagaaaca accaaatttt acatgacaga ggtaatcgtc cagccatctg agggaagttt
      781 ccctaacata ccaaggtctc agtttgttca gagcgttatt gcccggtgcc tggtggaact
      841 ctgcactgct agaagcactt tcagattcac cattcaaggc caggacggca aggtgtatat
      901 cttgctctgg gtgttgaact cagacagttt ggtgatggaa cctctgagta gttccggttg
      961 tatcaggaag ttcccactgt tggaagactc attggaagct gactctggct ctgcctggaa
     1021 cgccatcaaa gtcctctacc agccctgtat caaaagcagg aataaagagc ttgccagctc
     1081 ctgggaaggt gacatcagtg tccacccttt aaccctgccc tccacaacct gtttggagct
     1141 gctgttgata ctatcgagga acaatgcctc cctacctctg tcccttcgcc aaatgaattc
     1201 ttttcagctt tggtgctctc attgcaaaac ctgatgtagg agctcagcag gaagctgatg
     1261 tggaaactca gcaggtggcc tttttgaaga tgtaactgtg gaagctgcag ctttctggtc
     1321 taccagcaga cagctctcca gcacagaata cagccaaggc cagcaggtag ctctgtgagc
     1381 acagcctgct gacatgaaca agaactaagc tgcagaacag ggccttgtgc tgaaatttcc
     1441 agtttttctt gtttgcattt attctctaag agttgacttt agatccctgc aaactcaagg
     1501 ctacaaggaa agtcgtagtg ttgtagtagc aggttgtcgg caggttaagt atagaagttg
     1561 cacctctact cccacagaga ggaatattca aatcggcact gcgtcagcac cacctggaag
     1621 catattagct aatggaaacc catctgtcct gtgtgaacac agcgagggaa cttcactgga
     1681 gagctgagtg tcaactgctc taaatcctgg gaaataaact tttaaagagt tccaggtttg
     1741 tttaaagcat gtctttaaaa actaaaatat acaagttttc atatcttatt caaagaagat
     1801 gcttgctggt tggttgttga gtgattatcc aattaaagtt ttcctgaggg aataaaaaaa
     1861 aaaaaaaaaa aaaaaaaaaa aaa
//
