LOCUS       XM_039108544            5014 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin protein ligase E3C (Ube3c),
            transcript variant X1, mRNA.
ACCESSION   XM_039108544
VERSION     XM_039108544.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 9, 2024 this sequence was replaced by
            NM_001427087.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5014
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5014
                     /gene="Ube3c"
                     /note="ubiquitin protein ligase E3C; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 66 ESTs, 3 long SRA reads, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 216 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:362294"
                     /db_xref="RGD:1559986"
     CDS             272..3523
                     /gene="Ube3c"
                     /codon_start=1
                     /product="ubiquitin-protein ligase E3C isoform X1"
                     /protein_id="XP_038964472.1"
                     /db_xref="GeneID:362294"
                     /db_xref="RGD:1559986"
                     /translation="MFSFEGDFKTRPKVSLGGASRKEEKASLLHRTQEERRKREEERR
                     RLKNAVIIQSFIRGYRDRKQQYFTQRSAFDQCADSAQPGGTFRIADGPALTLLVRQLL
                     FFYKQSEDSKRLIWLYQNLIKHSSLFVKQLDGSERLTCLFQLKRLMSLCCRLLQNCSD
                     DSLNVALPMRMLEVFSSENTYLPVLQDSSYVVSVIEQILHYMVHSGYYRSLYLLINSK
                     LPSSIEYSDLSRVPMAKTLLENVLKPLHFTYSSCPEGARHQVFSAFTEEFLGAPFTDQ
                     IYHFIIPALADTQTVFPYEPFLNALLLLESRSSKRSSGVPWLFYFVLTIGENYLGALS
                     EDGLLVYLRVLQTFLSQLPASPTGVGRPDPTSDSEDDNEETDQPTSPEDGRVSAPYIT
                     EECLRKLDTKQQTNTLLNLVWRDSASEEVFTRMASICHTLMVQHRMMVPKVRLLYSLA
                     FNARFLRHLWFLISSMTTQMITGSMVPLLQVISRGSPMSFEDSSRIIPLFYLFSSLFS
                     HSLISIHDNEFFGDPIEVVGQRQLSMMPFTLEELILLSRCLRDACLGIIKLAYPETKP
                     EVREEYVSAFQSIGVTTNSEMQHCIQMEQKRWVQLFKVITNLVKMLKSRDTRRNFCPP
                     NHWLSEQEDIKADKVTQLYVPASRHVWRFRRMGRIGPLQSTLEVGLESPPLSVSEERQ
                     LAILTELPFVVPFEERVKIFQRLIYADKQEVQGDGPFLDGINVTIRRNYIYEDAYDKL
                     SPENEPDLKKRIRVHLLNAHGLDEAGIDGGGIFREFLNELLKSGFNPNQGFFKTTNEG
                     LLYPNPAAQMLVGDSFARHYYFLGRMLGKALYENMLVELPFAGFFLSKLLGTSADVDI
                     HHLASLDPEVYKNLLFLKSYEEDVEELGLNFTVVNNDLGEAQVVELKFGGKDIPVTGA
                     NRIAYIHLVADYRLNKQIRPHCLAFRQGLANVVSLEWLRMFDQQEIQVLISGAQVPVS
                     LEDLKSFTNYSGGYSADHPVIKIFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELY
                     PAFCIHNGGSDLERLPTASTCMNLLKLPEFYDEALLRSKLLYAIECAAGFELS"
ORIGIN      
        1 caccatcttg gttccgacgg caacgcggtg caggctcgag tcggagcgcc cctcgctcgg
       61 cggcggcgcg ccgtggatta agcagcgtgg acaggccggc ctccagcgtc gccgcgctcg
      121 cgcccgcgtg cagggcggag agcgctgagc cgcaggcggg gcggcgcggg acagcgaggc
      181 cgcgaccctg ccgggccccg cccagcccgc cgggcccgcc cccggccgct ctgtcgcctg
      241 ccgggccgcg cagatgggat aggcggcgaa gatgttcagc ttcgaaggcg acttcaagac
      301 aaggcccaag gtgtctctcg gtggcgcgag caggaaggaa gaaaaggctt ctcttttaca
      361 tcgcactcag gaagaaagac gcaagagaga ggaagaaagg cgaagattga aaaatgcagt
      421 gataatccag tcatttattc gaggatatag agacaggaaa caacaatact tcacccaaag
      481 aagcgcattt gaccagtgtg cagactctgc gcagcccggt ggcaccttcc gcattgctga
      541 tggtcccgcc cttaccctct tggtaaggca gcttctcttc ttttacaaac agagtgaaga
      601 ctccaaacgt ttgatatggc tttatcagaa cttaattaaa cacagctctc tgtttgtcaa
      661 gcaattggat ggatcagaaa gactgacatg cttatttcaa ttaaagaggt tgatgagcct
      721 ctgttgcagg ttgctgcaaa actgtagtga tgacagtttg aatgttgcac ttccaatgcg
      781 aatgctggag gtgttttcat ctgagaatac atacttgcct gttttacaag attctagcta
      841 tgtggtgtca gtgattgaac aaattttgca ctacatggtg cacagtggat attatagatc
      901 tctctacttg ttgattaata gcaagcttcc atcaagtatt gaatattctg atttatctcg
      961 agttcctatg gcaaaaacgt tgctggagaa tgtcctaaaa ccattgcact ttacgtacag
     1021 ctcctgccct gaaggtgcaa ggcatcaagt tttctcagcc ttcacagagg aatttctggg
     1081 agcacctttt actgatcaga tttatcattt catcattccg gccttagcag atacacaaac
     1141 tgtgttccct tatgagccct ttctgaatgc attattgtta ctcgagagtc gaagttcaaa
     1201 acggagtagt ggagtgccgt ggctcttcta ttttgtttta actattggcg agaattattt
     1261 aggagcactc tctgaggatg gcttgctggt ttatctgcgc gtgcttcaga ccttcctctc
     1321 tcagctacct gcttcaccca ctggtgtagg ccgtcctgat cccaccagtg actctgagga
     1381 tgataatgaa gagactgacc aacccaccag ccctgaggat ggcagggtct cagccccata
     1441 cattactgaa gagtgtctaa gaaaactaga tacgaagcaa cagaccaaca ccctattgaa
     1501 cctggtgtgg agggactcgg ccagtgagga ggttttcaca aggatggctt ctatctgcca
     1561 cacattgatg gtgcagcacc gaatgatggt gcccaaagtc aggcttctct acagtttagc
     1621 cttcaatgcc aggtttttga ggcacctttg gtttctcatc tcttcaatga caacacagat
     1681 gatcacaggg tctatggtgc cgttgcttca ggtgatatca aggggttcgc ccatgtcttt
     1741 tgaagattct agtcgaatca tcccactctt ttacctcttc agctccttgt tcagtcattc
     1801 actgatttcc atacatgaca acgaattttt cggtgacccc atagaagttg taggtcagag
     1861 acaattatcc atgatgcctt tcactctgga ggagctaatc ctgctgtcga gatgccttcg
     1921 agatgcctgc ttggggatca tcaagctagc atatccagaa acaaagccgg aagttcggga
     1981 agagtatgtc agcgcatttc agagtattgg ggtgactact aattctgaga tgcagcactg
     2041 catacagatg gagcagaagc gatgggtcca gttgttcaag gttatcacca acctagtgaa
     2101 aatgctgaag tctagagaca cgagaagaaa tttctgtcct ccaaaccact ggctgtcaga
     2161 acaagaagat atcaaagcag ataaagttac ccagctctat gtacctgcat ctagacatgt
     2221 gtggcgattc cggaggatgg gcagaattgg cccactgcag tccaccctgg aagtgggtct
     2281 ggaatcccca cccctgtctg tgtctgagga acgacagctg gccatcctga cagagctgcc
     2341 ttttgtggtt ccatttgagg agcgagtgaa gatctttcaa aggttgattt atgctgataa
     2401 gcaagaagtt caaggagatg ggccatttct ggatggaatc aatgtcacta taaggagaaa
     2461 ttatatatat gaagatgctt atgacaaact ttctccagaa aatgaacctg acttgaaaaa
     2521 acggatccgg gtgcacttgc tcaatgccca tggcctggac gaagctggca tcgatggtgg
     2581 tggtattttc agagagtttt taaatgaact actgaaatct ggttttaacc ccaaccaggg
     2641 gttctttaag actactaatg aagggcttct gtaccccaac ccagctgctc agatgctcgt
     2701 gggagattct tttgcaaggc attactactt cctaggcaga atgcttggaa aggctctata
     2761 tgaaaacatg ttggtggaac taccctttgc tggctttttc ctgtccaagc tactgggaac
     2821 cagtgcagat gtggacatcc accatcttgc ctcattggat cctgaagtct acaagaacct
     2881 gcttttcctt aagagctatg aagaggatgt ggaggagctg ggactgaact ttactgtggt
     2941 gaacaatgac cttggagaag cccaggtggt tgaactaaaa tttggtggga aagacatccc
     3001 tgtaactggg gccaaccgaa ttgcctacat ccacctggtg gctgactacc gactgaacaa
     3061 gcagatccga ccgcactgcc tagctttccg acagggcctg gccaatgttg tgagcctaga
     3121 gtggctccga atgtttgacc aacaggaaat tcaggtatta atttctggtg cacaagttcc
     3181 tgtaagtctg gaggacctaa aatcctttac aaactattca gggggctatt ctgccgatca
     3241 tcctgtcatt aaaatctttt ggagagttgt agaaggtttt actgatgaag aaaaacgcaa
     3301 gttgctcaaa tttgtaacaa gttgctcacg tccccctctc ctgggtttca aggagctata
     3361 ccctgcattt tgcattcaca atggaggctc tgaccttgag cggctaccta cagccagcac
     3421 ctgcatgaac ctgctgaagc tcccagagtt ttatgatgaa gccctgctgc gaagcaagct
     3481 gctgtatgcc atcgagtgtg ctgctggctt tgagttgagc tgagctgaat tgagcccagg
     3541 gaacttgatc tgacccaaag gcagccagca cctaccagac ccaagagagc actcaggcgg
     3601 gaccctcggc tctcctcagg ccttctatct ggcatccctc cctttctgat tttttttaag
     3661 atggttttat tgtgacacag tcacatacat agatggacat ttgcttttca cataacctag
     3721 ctattgttat gtgctatgtg gctggtttag taattttgcc aagaagagca caggttttag
     3781 aatagtggca actcaatgaa attaaccaaa gatgaagctc tggctttgct gatctggttt
     3841 atatcccctc ctgggtcagg caccagtatc tgtagacaga atctggggct gatacacaga
     3901 gccccgagcc actgcttctc atgtggttga ttgtttacaa gcctaattgt aaaactgaag
     3961 gtattttttc ctgctgcctt ttcccaaagt ggttaggttt ggaaaatgga taactctagt
     4021 attattttat ttgtgctttt taagccatgt cccccaccca ggtgggaatc gcatgcttgt
     4081 cttcagactc ctactgacct gcatcatgag gtttggacat ggctgtgtgg gtgagaggtg
     4141 actgctgtcc tcattgctct ttccttgtct ctgctttgtg cctgggaagc tttccaggag
     4201 gcagagaagg agcatcccta tacttcctga ggtactgtgt cacctgtagt gagttggcaa
     4261 ctgggggatg tgggcactgc agcttttatt aaagtcattt gaaccaaagt ggcaggctgc
     4321 gtctctccgt gatccacatg ctctcctggc ctaacagtgc tgcccatcat cttgcgcatc
     4381 ttggggggat tcatccaggc ctcagcacct ttgttttctg ccgctgtttt aataagaaga
     4441 cagcatccct ggcatctgtc agggaagagc atcaggccag gtgattctca tttaggcact
     4501 ttatcagggt ccagcttgtt gccagttgac ctcagcttct gcaaacagga atcagggaag
     4561 catctgggag gctagcatgc aaggatcatg gagctggtga ggactccaga ctgcttctca
     4621 tccaagtcca gcatcgtgcc tagaggctcg gtaaccagaa ttagcaatat gcttttaaat
     4681 gtgggaaaac tgaatgacac ttttaagaca atgacaatta tcagacaaaa tgtataattt
     4741 cttaatttga ataataaagt atttaaatgc tatttgtagt cctgacacat aggaagaaat
     4801 agcatttatc cttgattttg ttttttgttt ggggatattt atattgaatg tcctacatct
     4861 ttttattagt taatttgtgt attagtattt tagaattgac gtatctgaga ctgaagataa
     4921 attggcagtt tgtttttttt ctgctggctc ttctgagctt atttatttgt acgtcctaat
     4981 ggatgaatat ctacattaaa tcttttcccc aaga
//
