LOCUS       NM_001143894            5201 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus ubiquitin protein ligase E3B (Ube3b), mRNA.
ACCESSION   NM_001143894 XM_001077953 XM_001077967
VERSION     NM_001143894.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5201)
  AUTHORS   Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M,
            Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail
            S, Li P and Sutton G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473973.1.
            
            On or before Jan 22, 2009 this sequence version replaced
            XM_001077967.1, XM_001077953.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5201
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..5201
                     /gene="Ube3b"
                     /note="ubiquitin protein ligase E3B"
                     /db_xref="GeneID:687633"
                     /db_xref="RGD:1583074"
     exon            1..326
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            327..414
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            415..596
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     CDS             436..3648
                     /gene="Ube3b"
                     /EC_number="2.3.2.26"
                     /note="ubiquitin protein ligase E3"
                     /codon_start=1
                     /product="ubiquitin-protein ligase E3B"
                     /protein_id="NP_001137366.1"
                     /db_xref="GeneID:687633"
                     /db_xref="RGD:1583074"
                     /translation="MFTVSQTSRAWFLDKARQAREERLEQKERERSAVLIQALVRSFL
                     CRRRLHKDVRREIDEFFTADESGSSKRSALCIFKIARKLLFICKTTEDNERMEKLCRS
                     ILSSMDAENEPKVWYVSLALSKDLTLLWIKQIKSILWYCCELLGQLKPEILQDSRLIT
                     LYLTMLVTFTDTSTWKILRGKGESLRPALNHICANIMGHLNQRGFYSVLQVLLTRGLA
                     RPRPCLSKSTLTAAFTLALRPVVAAQFSDSLMRPFIIHIMSVPALVAHLSTMAPERLG
                     VLESHDMLRKFIVFLRDRDRCQDACESLEGCHTLCLMGNLLHLGSLNLKMLEEETDGF
                     VSLLTQMLCYCQKYVSQKKSNLTHWHPVLGWFSQSVDYGLNDSMYLITKQLQFLWGVP
                     LIRIFFSDILSKKLLEPPEPVPAQPQPSSPQTVLPVKSLLKRAFQKSASVRNILKPVG
                     GRRVDSTEVRKVCSICVLYQTSLTTLTQIRLQILTGLTYLDDLLPKLWAFICELGPHG
                     GLKLFLECLNNDTGESKQLLAMLMLFCDCSRHLITILDDIEVYEEQISFKLEELVTIS
                     SFLNSFVFKMIWDGIVENAKGETLELFQSVHGWLMVLYERDCRRRFAPEDHWLRKDLK
                     PGVLFQELDKDRKRAQLILLHIPHVVPHKNRVLLFRNMVIKEKEKLGLVETSSASPHV
                     THITIRRSRMLEDGYEQLRQLPQHAMKGAIRVKFVSDLGVDEAGIDQDGVFKEFLEEI
                     IKRVFDPALNLFKTTSGDERLYPSPTSYIHENYLQLFEFVGKMLGKAVYEGIVVDVPF
                     ASFFLSQMLGHHHSVFYSSVDELPSLDSEFYKNLTSIKRYDGDVADLGLTLSYDEDVM
                     GQLVCHELVPGGKTIPVTDENKISYIHLMAHFRMHTQIKNQTAALISGFRSIIKPEWI
                     RMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIVWLWDILASDFTPGERA
                     MFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGG
                     RLPTSSTCFNLLKLPNYSKKSVLREKLRYAISMNTGFELS"
     exon            597..717
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            718..777
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            778..882
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            883..979
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            980..1065
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1066..1148
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1149..1254
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1255..1375
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1376..1553
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1554..1723
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1724..1891
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            1892..2063
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            2064..2182
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            2183..2297
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            2298..2397
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            2398..2517
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            2518..2694
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            2695..2805
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            2806..2943
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            2944..3009
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            3010..3068
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            3069..3251
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            3252..3363
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            3364..3456
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
     exon            3457..5201
                     /gene="Ube3b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctccccttg gctgagtcag gcttttatcc ccacttctgg acgcttgtta cttctattcg
       61 gctgctaaag aagaagacag gatgaagaga ggttttcccc gtcgccacca tgggcaaaga
      121 agctgtgcgg aactgttgtt tcccggaact gaatgattgc ttccaggcgg agttcggaac
      181 acaacacccg gggcaagatg gcggccaggc ttcggccgct gccccgggtc tggcggaact
      241 cgggggtatc gggctgaggc ggcagtagct gcggcccgga ccccgagtgc gggggcctcg
      301 aacggataaa gatctccgga ctgcgggcca gaaagaccaa ctcctctgaa gccagaggct
      361 gcgcagggtc actgatggtc acctagcgtc tccactgcac aagcaggtcc tcagggttcg
      421 tgtcagtttg caaacatgtt cactgtatct cagacctcca gagcatggtt cctcgacaaa
      481 gccaggcagg cacgggaaga gaggctggag cagaaggagc gggagcgctc agcagtgctg
      541 atccaggcac tagtccgcag tttcctctgt cggaggcgac tgcacaaaga tgtcaggaga
      601 gagatcgatg agtttttcac tgctgatgag tctggatcca gtaaaagaag tgcactttgt
      661 atttttaaga ttgccaggaa gctgctgttc atatgcaaaa ctaccgagga caatgagaga
      721 atggagaagc tgtgtcgtag catcctgagc agcatggatg cagagaatga gccaaaggta
      781 tggtacgtgt ccctggctct ttccaaggac ctcactctgc tgtggattaa acagatcaag
      841 agcatcctgt ggtactgctg tgagcttctt gggcagctca agccagaaat cttacaggac
      901 tccaggctca tcacgctgta ccttaccatg cttgtcacct tcacggacac ttcaacatgg
      961 aagattctcc gggggaaagg tgaaagcctt cggccagccc tgaaccatat ttgtgcaaat
     1021 ataatgggcc acctcaacca gcgaggattc tactcagtgt tgcaggtact gctgacccga
     1081 ggcctggcca gaccccggcc ctgtctgtcc aaaagcacgc tgacggctgc cttcactctg
     1141 gccctgcgcc ctgtagttgc tgcgcagttc tcagacagtc tgatgcgacc gttcatcatc
     1201 cacatcatgt cggtacctgc tctcgtggct catctcagca ccatggcccc tgagcgtctc
     1261 ggggttttag agtcccatga catgcttcgt aaattcatcg tctttctgag agacagagac
     1321 cgatgtcaag atgcttgcga aagtttagaa ggctgccata ccctgtgcct catgggcaat
     1381 ctcctgcact tgggctccct caaccttaag atgttagagg aagaaacaga tgggtttgtg
     1441 agcttgctca cccagatgct gtgctactgt cagaagtatg tgtcccagaa gaagtccaac
     1501 ctgacccact ggcaccctgt gcttggctgg ttttcccagt ctgtggatta cggcctcaat
     1561 gactccatgt acctgatcac caagcagctg cagttcctgt ggggcgtgcc tctcatccgc
     1621 attttcttca gtgacatcct cagcaagaag ctgctggagc ccccagagcc agtgcctgcg
     1681 cagccacagc catcctcccc acagaccgtg cttcccgtga agagtctcct caagcgtgcg
     1741 tttcaaaagt cagcttcagt tcggaatatc ctcaagcctg tcgggggccg acgcgtggac
     1801 tccacggagg tgcggaaggt ctgcagcatc tgtgtgctct accagacctc gctgacaacc
     1861 ctcacccaga tccgcttgca gatcctcaca ggccttacct accttgatga cctgctgccc
     1921 aagctctggg cttttatctg tgagctgggg ccccatggag ggctaaagct cttcttggag
     1981 tgcctgaaca atgacactgg agagtccaag cagctcctgg ccatgctgat gctcttctgt
     2041 gactgctccc gccacctcat caccatcctg gacgacattg aagtttatga ggagcagatc
     2101 tcattcaagc tggaagagct ggtcaccatc tcttccttcc tcaactcctt tgtgttcaag
     2161 atgatctggg atggaatcgt agagaacgcc aagggtgaga ccttggagct gttccagtcc
     2221 gtccatggct ggctgatggt gctgtatgaa cgagactgcc gcaggcgctt cgctccagag
     2281 gaccactggc tacgcaagga tctcaagcct ggcgtgctct tccaggaact tgacaaggac
     2341 cgcaagaggg ctcagctgat cctgctgcac attccccacg tcgtgcctca caagaacaga
     2401 gttcttctgt tccggaacat ggttatcaag gagaaagaga agctggggct tgtggaaacc
     2461 agctctgcct cccctcacgt cacccacatc actatccgaa ggtcccggat gctggaggac
     2521 ggctatgagc aactgcggca gcttcctcag cacgccatga agggcgcgat ccgagtgaag
     2581 ttcgtcagtg accttggggt ggacgaagct ggcattgacc aggacggtgt ctttaaggag
     2641 tttctggaag agatcatcaa gagggtgttt gacccagcac tcaacctgtt caagacaacc
     2701 agtggggatg agaggctgta cccgtcaccc acgtcctaca tccatgagaa ctacctgcag
     2761 ctctttgagt ttgtggggaa gatgctggga aaggcggtgt atgaggggat cgtggtggac
     2821 gtgccctttg cctccttctt cctgagccaa atgctcgggc accaccacag cgtcttctac
     2881 agctccgtgg atgagctgcc ctccttggac tcggagttct ataaaaacct cacctccatc
     2941 aagcgctatg atggagacgt cgcagacctc gggctgacac tgtcttacga tgaagatgtc
     3001 atgggtcagc tcgtctgcca cgaactggtt cctggaggga agaccatccc ggtcacagat
     3061 gagaacaaaa ttagctacat ccatctgatg gctcattttc gaatgcacac tcaaatcaag
     3121 aaccagacag ctgctctcat tagtggcttc cgttccatta ttaagcccga gtggatccga
     3181 atgttctcta cccctgagct tcaacgtctc atctccgggg acaatgccga gatcgatctg
     3241 gaagacttaa agaagcacac ggtgtactac ggtggctttc acgggagtca cagagtcatc
     3301 gtctggctct gggatatcct ggcttctgac ttcacgcctg gtgaaagagc catgttcctg
     3361 aagtttgtga ccagctgctc ccgacccccg ctcctaggat tcgcctacct caaacctccg
     3421 ttctccattc gctgtgtgga agtgtcggat gaccaggaca ctggggacac cctgggcagc
     3481 gtcctcaggg gcttcttcac catccgcaag agggagccag gcgggcgtct gcccacctct
     3541 tccacttgct tcaacctgct taagctgccc aactacagca agaaaagcgt actccgagag
     3601 aaactgcgct acgccatcag catgaacaca ggctttgagc tctcctaacc caacccaatc
     3661 tcactactaa ggagccctca gctcctggag gcagcacgcc ccaggagtgt ggccaggtca
     3721 ccgcagcctc agaccctctc aatagccatg agacacccaa gcttgggggt gctgcacagt
     3781 gccctccgtg cactggggac agagggctga caaaaatacc cccagttctg cccatgcagg
     3841 tcttcctcct tctgggccta gcgtttgcaa agcaacgcct agcagttctg tgaggcgttc
     3901 tcttgccctc tgaggacaca aggcctgtgt ctgtgagctc ctccttccgt tctgaaaact
     3961 caggtacggc ctcgccaagc ctctatgcac agcaaagtcc ctgcctctac cctgtccaca
     4021 gtggcccctc cctaggcaac cacacccagc tccagccagg gaggccactg agcacagtca
     4081 gggtctcctg caggggaccc aggggatcca caccacagcc ctctttccca caccctcagc
     4141 gggccatgct caggggaccc ttgctgtcag cctgtgcgtg gcctctgcag cagtgtccta
     4201 gcttgggaga gcagcctgcc acccctggag aacagcccat ttctgcagta cccagagcct
     4261 gctcaccctg tgtgtctgcc cctcattgga gaaccacacg agaccctaca gtgccccgtc
     4321 ctctgggcag tactttattc cagggacttg agagtccttc ctttgcactg acaggccccg
     4381 gaggctgagg agtgtcccac acatctccac actaccgcct ctgtggctct gcgctttctt
     4441 tgtctgggac ctcattctct ttccccaccc actgcactcc taggcccttg ttcccattta
     4501 ccttaagaac agattcggga tattgaggca gacgccctga gcttagtgat ctgatagcag
     4561 ccatgtgtct cctgcctcac caagttcttg tatccctccc accctggtgg aagccgggag
     4621 tcctggtcct tcctccacat tgtggagtca gcttagggct acagtgctca gagcaagaag
     4681 acgcctgcca cgaggagcct gcacagcggg agagcagccg agccctgttc tcactttagc
     4741 aaagagctgt ggccggagct tggccaggcc caggagagcc cctggggttc tggagtgtgg
     4801 tgccagcttc acgtggatgg gaggctggca cgtccttgga agatgtctgc cagccatgtg
     4861 tgttcccagc ttgtccatgg attcctgtgc cctgagcaca gcatgcatga gtaacctgga
     4921 gccagagagt cacaacgggg acacaggaga gagtggggtg taagcactga taccagcttg
     4981 acctgtttgg ttttgaccta aggtcgtctg tcggtcacga gtctgcttcc ctgcagttcg
     5041 ttgtgacaag ggcgtccaag cactcactca tctgtgccat tgctgctgtt catggcgtcc
     5101 cagccgctct tggtggctcc agaaagaagt cggggtttgg ttttgtagct agctggtgga
     5161 ctaagacttg tcagggcttt attaaatttg tacttgagca c
//
