LOCUS       XM_006238443            1955 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin conjugating enzyme E2 U
            (Ube2u), transcript variant X1, mRNA.
ACCESSION   XM_006238443
VERSION     XM_006238443.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006238443.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006238443.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1955
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1955
                     /gene="Ube2u"
                     /note="ubiquitin conjugating enzyme E2 U; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 12 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:500511"
                     /db_xref="RGD:1565480"
     CDS             649..1662
                     /gene="Ube2u"
                     /codon_start=1
                     /product="ubiquitin-conjugating enzyme E2 U isoform X1"
                     /protein_id="XP_006238505.1"
                     /db_xref="GeneID:500511"
                     /db_xref="RGD:1565480"
                     /translation="MSYKTDSKLAGYSKAYSLLEREFKELQNSRSKGINAYPVSSDLM
                     SWKAEIEGLKYSVCEGLVFHLTIDFSQDYNLVPPVVKFVTIPFHPNVHPYTGQPSLGI
                     LDKPDMWDTSYTILRILFDLQMLLSYPMVKNPLNLEAAELLVKDESLYRTVIRELLQS
                     EPPKTEGSLVLAEKPQEHIRIIKTISFNDYYKTWSQIATTKVAEHSKNQFVGDPHFMA
                     QYYKWKEQDRQYQRQWESKFVLSKWQNIRKKMTQESKEPSDKEEVLYPSPTELSSEPN
                     VEDESGFYNVPQEWSEESFSEEHDSEESWEEEVDNLVAWTDGLDEESLNYENYENFEN
                     IDN"
ORIGIN      
        1 ggtgggcttt gggtaccagt catcatattt ttattacctg acagtcaaag agaaagattc
       61 atggtggtta ggcacgcgtg agaagcttct gtgattacag tccaagtcct ggagcgcagg
      121 gaagactctc tatgctagcc ctttgggtgc actgaggggt ggaggatgtc gtcctgaatg
      181 ctgacttcct tggccttccc cactgaaact gttcactgat tggctaagag gtcctacagt
      241 cccgttgctg attagatgag aatcaaccac ctcgcactgc ctctagagga ctgttgcttg
      301 gcaacgggtt tgctttgtct agctgaactg acacagcctt cacttgtcag gtagagagaa
      361 cttggcagtg ctgcttcggg atttgccttt tccttttggc ctgtcaacaa caccggcttc
      421 tctcaagtgg tcccctagtt tgtcttgggg tggaagctga gacaacacag ataggaagga
      481 ccccagtctt ccttcaggag ttcccttctg gaggagtcag aggtagaaaa gaaagtcatt
      541 attaaatcct aaacgtagta gtcatttgac agggagtgag taaccgttaa ccaggggtca
      601 gaggataatc agagacctca gtcaagagct ctgccctgag taaacgtgat gagttacaag
      661 acagatagca agctcgctgg gtattccaaa gcttatagct tgctagaaag agagttcaag
      721 gaattacaaa acagcagaag caagggcatt aatgcttatc ctgtaagtag tgacctgatg
      781 agttggaaag ctgagattga aggacttaag tattcagttt gcgaagggct tgttttccac
      841 ctgacaatag atttttcaca agactacaac cttgttcctc cagttgtgaa atttgtaaca
      901 attccttttc atccaaatgt acacccgtat accggtcaac ccagtctagg cattttggac
      961 aagccagaca tgtgggacac tagttataca atactcagga tcttatttga tctacagatg
     1021 ttgctttctt accctatggt aaaaaatcca ttgaacttgg aagcagccga gctgctggtt
     1081 aaagatgagt ctttgtacag aacagtaatc cgggaacttt tgcagtcaga accaccaaaa
     1141 acagagggca gcctggtgtt ggctgaaaag ccacaggaac acatcagaat aatcaaaaca
     1201 atctcattta atgattacta caagacatgg tcccagatag ccacgacaaa agtcgcagaa
     1261 cactccaaaa accaatttgt tggagatcca catttcatgg cacagtacta caaatggaag
     1321 gagcaggatc ggcagtatca aaggcaatgg gaatcaaagt ttgtgctctc aaagtggcag
     1381 aacattagaa agaaaatgac tcaggagagc aaggagccct ccgacaaaga ggaggttctc
     1441 tacccatctc caactgaact ttcttctgaa cctaatgtag aagatgagtc agggttttat
     1501 aatgtacctc aggagtggtc agaggaaagc ttttcggaag aacatgactc agaagaatcc
     1561 tgggaagagg aagtggacaa cctggttgcc tggaccgatg gtcttgatga agaatctttg
     1621 aactatgaga actatgaaaa ctttgagaac attgacaact aacacacaag gacttcacat
     1681 gctgcccagt tacagtgcaa cctcatgggg cagttttggg ggaggctcag aacctatctt
     1741 ctgctctcta ccccggttaa tctcatcttt ctggaaacac aaaatacaaa tataagtcaa
     1801 tgaatgtgtt cttgctctgc gtttctcaaa actgagtgct tactgcaatg ttctgtcaat
     1861 gctattctgc acattcccat aattcaccgg gtactggaac taagttcatt ttttttcttc
     1921 tctttaattc acatgagcac actgtagccg tcttc
//
