LOCUS       NM_001145163            2653 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus ubiquitin conjugating enzyme E2 QL1 (Ube2ql1),
            mRNA.
ACCESSION   NM_001145163 XM_001055050
VERSION     NM_001145163.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2653)
  AUTHORS   Wake,N.C., Ricketts,C.J., Morris,M.R., Prigmore,E., Gribble,S.M.,
            Skytte,A.B., Brown,M., Clarke,N., Banks,R.E., Hodgson,S.,
            Turnell,A.S., Maher,E.R. and Woodward,E.R.
  TITLE     UBE2QL1 is disrupted by a constitutional translocation associated
            with renal tumor predisposition and is a novel candidate renal
            tumor suppressor gene
  JOURNAL   Hum Mutat 34 (12), 1650-1661 (2013)
   PUBMED   24000165
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Feb 14, 2009 this sequence version replaced XM_001055050.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.411925.1,
                                           SRR26643289.420.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1351              JAXUCZ010000001.1  35377264-35378614
            1352-2653           JAXUCZ010000001.1  35416323-35417624
FEATURES             Location/Qualifiers
     source          1..2653
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1p11"
     gene            1..2653
                     /gene="Ube2ql1"
                     /note="ubiquitin conjugating enzyme E2 QL1"
                     /db_xref="GeneID:679949"
                     /db_xref="RGD:1598121"
     exon            1..1351
                     /gene="Ube2ql1"
                     /inference="alignment:Splign:2.1.0"
     CDS             569..1483
                     /gene="Ube2ql1"
                     /EC_number="6.3.2.19"
                     /note="ubiquitin-conjugating enzyme E2Q family-like 1"
                     /codon_start=1
                     /product="ubiquitin-conjugating enzyme E2Q-like protein 1"
                     /protein_id="NP_001138635.1"
                     /db_xref="GeneID:679949"
                     /db_xref="RGD:1598121"
                     /translation="MATLLRKIGLIRLHNRDTEDPKHHHNHRGGGGGQQSASLRGKGG
                     GKSGGHKQQQQQQHPGGSGDASPGPGKGKSKRAAELAARDKQPQPAAGAAGVAGAGGP
                     RERAAGARAGPGPAVAAAAAGGSLVPAARQQHCTQVRSRRLMKELQDIARLSDRFISV
                     ELVNENLFDWNVKLHQVDKDSVLWQDMKETNTEFILLNLTFPDNFPFSPPFMRVLSPR
                     LENGYVLDGGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFS
                     RKEAEATFKSLVKTHEKYGWVTPPVSDG"
     exon            1352..2653
                     /gene="Ube2ql1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccgccccct ccgcgccggg ctcggctcag acggagcaac cgcctctgca atgtcagcag
       61 ccgcagcggc ggcggcgacg agagcggcag tggcccgggc cccgcggtag ccgccagcgc
      121 agcacggccc ggcaggagca cagcgcgact ccgcggccac ctctctgcct ccagggcgcc
      181 gcgggcctct gtgagcgccg cggtgcagct tttagactcc gggccagccg gtctgcggcc
      241 gcgcacaaag gaccacggac acccggcgtc cggggactgc gcccagggac cggccaggga
      301 cagcagctgc gccgcgtctc cacgcctccc ctccccgggc taccggagcc cttgccggag
      361 aagacccgtc atatgacagc ggcgacgcgg cggccagcga gcgctggtgc tccccgctcc
      421 gctgcgccac ggccgccggc tcctaaggtg gccctcgccg cgccccactg agcggtcgcc
      481 tgcctccccc cacaagcccg gtgcgtccca gctatccggc tcggggatca ggagccccgg
      541 ggagctcccc gccagagccg agcctaagat ggccacgctg ctccgtaaaa tcgggctcat
      601 tcgcctgcac aaccgggaca ccgaggaccc caagcaccac cacaaccacc gcggcggagg
      661 cggcggccag cagagcgcat cgctgcgcgg caaaggtggt ggtaagagcg gtggccacaa
      721 gcagcagcag caacagcagc accccggggg ctccggcgac gccagcccgg ggcccggcaa
      781 gggcaagagt aagcgcgcgg cggagctggc cgcgcgcgac aagcagccac agccagccgc
      841 gggggcggcg ggggtggcgg gcgccggggg cccccgagag cgggcggcgg gcgccagggc
      901 ggggccgggc cccgcggtgg ccgcggcggc ggcgggcggc agcctggtgc ccgcggcgcg
      961 ccagcagcac tgcacacagg tgcgcagccg gcggctcatg aaggagctcc aggacatcgc
     1021 gcgcctcagc gaccgcttca tctcggtgga gctggtaaat gagaacctct tcgactggaa
     1081 cgtgaagctg caccaggtgg acaaggactc ggtgctgtgg caggacatga aggagaccaa
     1141 cacggagttc atcctgctca acctcacctt cccggataac ttccccttct cgccgccctt
     1201 catgcgggtg ctcagtccgc gactggaaaa cggctacgtg ctggacggag gcgccatctg
     1261 catggagctg ctcacgccgc gcggctggtc cagcgcctac acggtggagg ccgtcatgcg
     1321 ccagtttgct gccagcctgg tcaagggcca gggacggatc tgcagaaaag ccggcaagtc
     1381 aaaaaagtcc ttcagccgca aggaagctga agcaaccttt aagagtttgg tgaagacaca
     1441 tgagaaatac ggctgggtca ccccgcccgt gtctgacggc tgatgcctgc acgtgcccca
     1501 gacactcgag ccgcccgtcc acactccacc ctgccatctc ctccaccgct gtgcatcttc
     1561 tacccttttc tactccagcc agaactgtgt tctgaatgca aaggactcac ttaagttatt
     1621 tatgaactga cgtgtttacg gagagaaaga gcaaactgtt cggggattgt gtttccataa
     1681 taaatgaccg tctctaagtc actttagaac aaacgcggag atgatgacgt ttcccagccc
     1741 gcctcctcta cccacctatc gaattgccct tgcttctttc cacgacagca gctgcgagca
     1801 gccccaggga actcaatgcc ccgcccactt catttccata tacaaggggg ctgttcccaa
     1861 gtctggagcg ccgcaagcca ccgggccgcc ggtctgtgtt tgctgagatc aggtcgacat
     1921 aacttgaaga catctcattc tctctgtggc ctgtggtcct ctgtgatgac atttagacct
     1981 cacgaaaaca caaatctaac attgccaggt tttagtgctg acttaaaact acaactgccc
     2041 acttgattaa aatgtgctcc catgcttaac ttgttctgtg ctgctgttca aaaataaatc
     2101 agtgccattt gatgagaggc agggggtgct gcgccaccag gggggttcag gacataaggt
     2161 gcccctccct gggtgctcag atcggtggac ggccaaaggg aacagtctct tcagacatta
     2221 gagaacgctc cagcaaccac gcttctgtgt ctgtctcctc tcagccacca gaagacaatt
     2281 tcccctttgc cgatgatgct gtcagactca ctttgtcttc tgtgctagtg acaggagacg
     2341 ccagaactgc caaaggacac caggtgacac aaggggactt gcatgacccg gtctgttact
     2401 tcacccacta gtcacttgtg tgtccctgac ttgaggcaag agcaccctcg ctgtgctgtg
     2461 acctccctgt tatttaatct ccccacactt tcattttact cttctgttac atcatctaga
     2521 actttctaag aaactccatg aaatgaggag ataatgttta tgacaacatg cagaaagagg
     2581 taaaaaaaaa atgttcattc caagtggaaa atcttattgg agacatttta aataaaacca
     2641 tgcatacctg aca
//
