LOCUS       NM_001398878            2909 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus ubiquitin conjugating enzyme E2 Q2 (Ube2q2),
            mRNA.
ACCESSION   NM_001398878 XM_039082377
VERSION     NM_001398878.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2909)
  AUTHORS   David,Y., Ziv,T., Admon,A. and Navon,A.
  TITLE     The E2 ubiquitin-conjugating enzymes direct polyubiquitination to
            preferred lysines
  JOURNAL   J Biol Chem 285 (12), 8595-8604 (2010)
   PUBMED   20061386
REFERENCE   2  (bases 1 to 2909)
  AUTHORS   Melner,M.H., Haas,A.L., Klein,J.M., Brash,A.R., Boeglin,W.E.,
            Nagdas,S.K., Winfrey,V.P. and Olson,G.E.
  TITLE     Demonstration of ubiquitin thiolester formation of UBE2Q2 (UBCi), a
            novel ubiquitin-conjugating enzyme with implantation site-specific
            expression
  JOURNAL   Biol Reprod 75 (3), 395-406 (2006)
   PUBMED   16760379
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Dec 27, 2021 this sequence version replaced XM_039082377.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.2199688.1,
                                           SRR26360172.322627.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-430               JAXUCZ010000008.1  64415074-64415503
            431-532             JAXUCZ010000008.1  64428021-64428122
            533-637             JAXUCZ010000008.1  64432724-64432828
            638-694             JAXUCZ010000008.1  64440214-64440270
            695-835             JAXUCZ010000008.1  64444369-64444509
            836-920             JAXUCZ010000008.1  64446970-64447054
            921-981             JAXUCZ010000008.1  64448828-64448888
            982-1072            JAXUCZ010000008.1  64449572-64449662
            1073-1131           JAXUCZ010000008.1  64454651-64454709
            1132-1180           JAXUCZ010000008.1  64457687-64457735
            1181-1276           JAXUCZ010000008.1  64458093-64458188
            1277-1343           JAXUCZ010000008.1  64470509-64470575
            1344-2909           JAXUCZ010000008.1  64472860-64474425
FEATURES             Location/Qualifiers
     source          1..2909
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..2909
                     /gene="Ube2q2"
                     /gene_synonym="RGD1307680"
                     /note="ubiquitin conjugating enzyme E2 Q2"
                     /db_xref="GeneID:363065"
                     /db_xref="RGD:1307680"
     exon            1..430
                     /gene="Ube2q2"
                     /gene_synonym="RGD1307680"
                     /inference="alignment:Splign:2.1.0"
     CDS             242..1375
                     /gene="Ube2q2"
                     /gene_synonym="RGD1307680"
                     /EC_number="6.3.2.19"
                     /note="ubiquitin-conjugating enzyme E2Q (putative) 2;
                     ubiquitin-conjugating enzyme E2Q family member 2"
                     /codon_start=1
                     /product="ubiquitin-conjugating enzyme E2 Q2"
                     /protein_id="NP_001385807.1"
                     /db_xref="GeneID:363065"
                     /db_xref="RGD:1307680"
                     /translation="MSVSGLKAELKFLASIFDKNHELFRIVSWKLDELHCQFLVPPPP
                     PPGSSHSPPPPLTLHCNITESYPSSSPIWFVDSDDPNLTSVLERLEDTKNNSSLRQQL
                     KWLICDLCRLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEMAEDIEDLDHYE
                     MKEEEPINGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDV
                     YRSQSYKAGIYSVELINDSLYDWHVKLHKVDSDSPLHSDLQILKEKEGIEYILLNFSF
                     KDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVK
                     GKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG"
     exon            431..532
                     /gene="Ube2q2"
                     /gene_synonym="RGD1307680"
                     /inference="alignment:Splign:2.1.0"
     exon            533..637
                     /gene="Ube2q2"
                     /gene_synonym="RGD1307680"
                     /inference="alignment:Splign:2.1.0"
     exon            638..694
                     /gene="Ube2q2"
                     /gene_synonym="RGD1307680"
                     /inference="alignment:Splign:2.1.0"
     exon            695..835
                     /gene="Ube2q2"
                     /gene_synonym="RGD1307680"
                     /inference="alignment:Splign:2.1.0"
     exon            836..920
                     /gene="Ube2q2"
                     /gene_synonym="RGD1307680"
                     /inference="alignment:Splign:2.1.0"
     exon            921..981
                     /gene="Ube2q2"
                     /gene_synonym="RGD1307680"
                     /inference="alignment:Splign:2.1.0"
     exon            982..1072
                     /gene="Ube2q2"
                     /gene_synonym="RGD1307680"
                     /inference="alignment:Splign:2.1.0"
     exon            1073..1131
                     /gene="Ube2q2"
                     /gene_synonym="RGD1307680"
                     /inference="alignment:Splign:2.1.0"
     exon            1132..1180
                     /gene="Ube2q2"
                     /gene_synonym="RGD1307680"
                     /inference="alignment:Splign:2.1.0"
     exon            1181..1276
                     /gene="Ube2q2"
                     /gene_synonym="RGD1307680"
                     /inference="alignment:Splign:2.1.0"
     exon            1277..1343
                     /gene="Ube2q2"
                     /gene_synonym="RGD1307680"
                     /inference="alignment:Splign:2.1.0"
     exon            1344..2909
                     /gene="Ube2q2"
                     /gene_synonym="RGD1307680"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggtggagtc ggttacaaag gcagcagccg gcccggctcc cgcacgcccg cccgcacgcc
       61 cgccgaggcc tcgagctcct cgccattttc cagccgcgct cggacgcggg tcgcggcggc
      121 ggggagaggc ggagccgcga gagcgcggcc ccggccggcc ccgcggggcg gtcgcggccg
      181 tgacagcggc tcccggcccc ggctcccttt cctcacccct cccgccggag atgaggggaa
      241 gatgtccgtg tcagggctca aggccgagct gaagttcctg gcgtccatct tcgacaagaa
      301 ccacgagcta ttccgcatcg tcagctggaa gctggacgag ctgcactgcc agttcctggt
      361 gccgccgccg ccaccgccgg gcagctcgca ttcgccgccg ccgccgctca cactccactg
      421 caacatcacg gagtcttacc cttcttcttc accaatatgg tttgtggact ctgatgaccc
      481 aaatctgaca tcagtcctgg agcgcttaga agatactaag aacaacagtt cgctccgtca
      541 gcaattgaag tggttgatat gtgacctctg cagattatat aaccttccta agcacctgga
      601 tgttgagatg ctagatcaac cactacccac gggtcagaat ggcacaacgg aggaagtaac
      661 ttcagaagag gaggaagagg aagagatggc tgaagatata gaagacttgg atcactacga
      721 gatgaaggaa gaagagccta ttaatgggaa aaagtcagaa gacgaaggga ttgaaaaaga
      781 aaatttggca atattggaga aaatcaggaa gactcaaagg caagaccatt taaatggtgc
      841 ggtatctggg tcagtacaag catcagatag actcatgaag gagctcaggg acgtctacag
      901 atcacagagc tacaaggcag ggatctattc agtggagcta ataaatgaca gcttatatga
      961 ctggcacgtc aaactacaca aggttgactc tgatagtcct ttgcacagtg atcttcagat
     1021 cttaaaagaa aaagaaggca tagaatatat tttgcttaac ttctctttta aggataattt
     1081 cccatttgat cccccgtttg ttcgagtggt gttacctgtt ctctcaggag ggtacgtgtt
     1141 gggcggagga gcactgtgta tggaacttct cacaaaacag ggctggagca gtgcctactc
     1201 aatagaatct gtcatcatgc agatcaatgc caccttagtg aaaggcaaag ctcgggtaca
     1261 gtttggagca aataagaatc agtataatct agcacgagcc cagcaatcct ataattccat
     1321 tgtacagata catgagaaaa atggctggta cacacctcca aaggaagatg gctaactaca
     1381 ttgacatatg tctggaccaa tgttgcttta aagaaaatcg ttccaacgta cagacataag
     1441 cttttgagtg cccgtataac agcagtaccg aagacattag ctaatagatc atttagtgga
     1501 taatctgtca actgacatcc agttacagtc ttttcatttt gctcacttta ggtatcttgg
     1561 actgagcagt ggggccttta ctgaattttt cctgataagt acacacagta gccactccct
     1621 accacctctt tcttgaaaag tgaaatcttt taagcaggga agctcagcat cagtttactg
     1681 cagctgtgat tttacagtaa cctttctata ttgagcctat ggggtatgaa gatatgcaaa
     1741 atcctgttcg tttagagcca ataaaagttt aactgatggt caatactggt ttagaaattt
     1801 taggtcttct aaaccatagc tttttcaggt ctgaaatcat tttattgcca aaattatgac
     1861 aggaagcctc ttcattaact tgttacattt ttccatggtt gtgtgaaggt ttgaactagt
     1921 ctgaaagtct gattgtaatt gtgtcatgtt aggtacagca aagccaggca gccacttgtg
     1981 accgtaattc ccactggggc agcagggtct tgttgaactg aacctgcttc ctgttggttc
     2041 aacatttctt gtgaggaaga gccacagtgt agaacctgaa gttctaaagt atgaggtcat
     2101 ttacctttcc atttattagc ggggtgttgc aattgatgat aagctaataa acgtatggaa
     2161 tgattggcac aaagacagac tcttggagca aaattaccta aattggagat ccttaaattt
     2221 tcctatagtc atgcagtgac ttttacatca gaagactagt aggaattcag cccatgttaa
     2281 ttcttttata aagtgtgaca tgaatcaacg tactttgcat tttactgcct tacctgaatc
     2341 agtcctcttt ggttggcaat agatttcttt tttctaataa tcccatgttt gatttaaatc
     2401 tagctattta agcactttta aaaagaaacc cagaagcaca ttttcctgca caaaccaata
     2461 cagagttcaa tggtatttcc tatatatttg atttgggatt ttttttttaa actttgtaaa
     2521 ccacaactag gagacgtggc acttgtgcat tttatgtgtg gttttagttt ctcttgattc
     2581 tgttggttaa gagggcaata aagatatctg gtattctcgg tcacttggtt accttaaata
     2641 aatgattacc agtgactcgg atgacaagtg acaaggcaga attcttcaac acgttatgaa
     2701 gctccttatg cctaaggcaa aatcttgaat atattattga attctaattt cctactagct
     2761 agcagactga cagctgcaca ttcggcatgc tttgggttgg tttttttttt ttttttggat
     2821 tttatttttc attgcagatt tatttggcaa tgtacagtaa attttgtaaa cttgcatcaa
     2881 gtttatgaat aaagaaccat ttaaaaatc
//
