LOCUS       NM_001024798            4088 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus ubiquitin associated protein 2-like (Ubap2l),
            mRNA.
ACCESSION   NM_001024798 XM_342284
VERSION     NM_001024798.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4088)
  AUTHORS   Youn,J.Y., Dunham,W.H., Hong,S.J., Knight,J.D.R., Bashkurov,M.,
            Chen,G.I., Bagci,H., Rathod,B., MacLeod,G., Eng,S.W.M., Angers,S.,
            Morris,Q., Fabian,M., Cote,J.F. and Gingras,A.C.
  TITLE     High-Density Proximity Mapping Reveals the Subcellular Organization
            of mRNA-Associated Granules and Bodies
  JOURNAL   Mol Cell 69 (3), 517-532 (2018)
   PUBMED   29395067
REFERENCE   2  (bases 1 to 4088)
  AUTHORS   Ansari,I.U., Longacre,M.J., Paulusma,C.C., Stoker,S.W.,
            Kendrick,M.A. and MacDonald,M.J.
  TITLE     Characterization of P4 ATPase Phospholipid Translocases (Flippases)
            in Human and Rat Pancreatic Beta Cells: THEIR GENE SILENCING
            INHIBITS INSULIN SECRETION
  JOURNAL   J Biol Chem 290 (38), 23110-23123 (2015)
   PUBMED   26240149
  REMARK    GeneRIF: the predominant P4 ATPases in pure pancreatic beta cells
            and human and rat pancreatic islets were ATP8B1, ATP8B2, and ATP9A.
            ATP8B1 and CDC50A were highly concentrated in ISG
REFERENCE   3  (bases 1 to 4088)
  AUTHORS   Bordeleau,M.E., Aucagne,R., Chagraoui,J., Girard,S., Mayotte,N.,
            Bonneil,E., Thibault,P., Pabst,C., Bergeron,A., Barabe,F.,
            Hebert,J., Sauvageau,M., Boutonnet,C., Meloche,S. and Sauvageau,G.
  TITLE     UBAP2L is a novel BMI1-interacting protein essential for
            hematopoietic stem cell activity
  JOURNAL   Blood 124 (15), 2362-2369 (2014)
   PUBMED   25185265
REFERENCE   4  (bases 1 to 4088)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   5  (bases 1 to 4088)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   6  (bases 1 to 4088)
  AUTHORS   Naz,R.K. and Dhandapani,L.
  TITLE     Identification of human sperm proteins that interact with human
            zona pellucida3 (ZP3) using yeast two-hybrid system
  JOURNAL   J Reprod Immunol 84 (1), 24-31 (2010)
   PUBMED   19945174
REFERENCE   7  (bases 1 to 4088)
  AUTHORS   Wang,Y.L., Faiola,F., Xu,M., Pan,S. and Martinez,E.
  TITLE     Human ATAC Is a GCN5/PCAF-containing acetylase complex with a novel
            NC2-like histone fold module that interacts with the TATA-binding
            protein
  JOURNAL   J Biol Chem 283 (49), 33808-33815 (2008)
   PUBMED   18838386
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473976.2.
            
            On Sep 11, 2008 this sequence version replaced NM_001024798.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..4088
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..4088
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /note="ubiquitin associated protein 2-like"
                     /db_xref="GeneID:361984"
                     /db_xref="RGD:1308707"
     exon            1..92
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            93..222
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     CDS             133..3450
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /note="Atpase, class I, type 8B, member 2"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2-like"
                     /protein_id="NP_001019969.2"
                     /db_xref="GeneID:361984"
                     /db_xref="RGD:1308707"
                     /translation="MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISD
                     HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
                     KGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
                     KSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGSSS
                     GNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSET
                     KIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPL
                     VFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQAL
                     AQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTM
                     MEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQ
                     KKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAP
                     SSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPS
                     SISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSESPSTSSIPSLNETVPA
                     ASLLTTASQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLH
                     TSVESEANLHSSSSTFSTTSSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRS
                     SVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYS
                     IPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQ
                     QTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASAT
                     PFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLP
                     SALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQR
                     QQEEQDILTLVDDQLGE"
     exon            223..300
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            301..411
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            412..580
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            581..676
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            677..722
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            723..835
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            836..895
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            896..948
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            949..1034
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            1035..1206
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            1207..1405
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            1406..1683
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            1684..1856
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            1857..2046
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            2047..2101
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            2102..2276
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            2277..2349
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            2350..2545
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            2546..2634
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            2635..2688
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            2689..2770
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            2771..2988
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            2989..3094
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            3095..3162
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            3163..3360
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            3361..3411
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
     exon            3412..4088
                     /gene="Ubap2l"
                     /gene_synonym="Atp8b2; EP1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggggtgtca gtgtggagga gactgaggta aagttggcag cgcagcggcg ttggcggcgg
       61 cggcggcggc agcggcaacg cggcggggcc ggtattcttc cttgtaaata ctgttatttg
      121 tatatactgt aaatgatgac gtcggtgggc actaaccgag cccggggaaa ctgggaacaa
      181 cctcaaaacc aaaaccagac acagcacaag cagcggccac aggccactgc agagcaaatt
      241 cgacttgcac agatgatttc ggaccataat gatgctgact ttgaggagaa ggtgaaacaa
      301 ttgattgata tcacaggcaa aaaccaggat gaatgtgtga ttgctttgca tgactgcaat
      361 ggagatgtca acagagccat caatgttctc ctggaaggaa atccagacac gcattcctgg
      421 gagatggtcg ggaagaagaa aggagtctca ggacagaagg atggtggaca aactgaatct
      481 aatgaagaag gaaaagaaaa tcgagaccgg gacagagact atagtcgacg acgtggtggg
      541 ccaccaagac gggggagagg tgccagccgt ggacgagagt ttcggggcca ggaaaatgga
      601 ttggatggca ctaagagtgg tggaccttct ggaagaggca cagacagagg gagaagaggc
      661 cgtggccggg gcagaggtag ttctggtaga cgaggaggaa ggttttctgc tcaaggaatg
      721 ggaaccttta accctgctga ttatgcagag ccagccaaca ctgatgataa ctatggcagt
      781 agcagtggca atacatggaa caacactggc cactttgaac cagatgatgg aacaagactt
      841 gatttcattg gggttgaggg gtcaaattat ccccgaaaat ttgagactgc tcctggtgca
      901 tggaggactg caacagaaga gtggggaact gaagattgga atgaagatct ttctgagacc
      961 aagatcttta ctgcctctaa tgtgtcttca gtgcctctgc ctgcggagaa tgtgacaatc
     1021 actgctggtc agagaattga tcttgctgtt ctgttgggga agacaccgtc ttcaatggag
     1081 aatgattcat ctaatctgga tccatctcag gctccttccc tggcccagcc tctggtattc
     1141 agtaattcga agcagaatgc catatcacag cctgcttcag ggaatacatt ttctcatcat
     1201 agcatggtga gcatgttggg gaaaggattt ggtgatgttg gggaagctaa aggtggcagt
     1261 acaacaggct ctcagttctt ggagcaattc aagactgcac aggccctggc tcaactggca
     1321 gctcaacatt ctcagtctgg aagcaccacc acctcctctt gggatatggg ctcaacaaca
     1381 caatcaccat cactggtgca gtatgatttg aagagtgcaa atgattcaac agtgcacagt
     1441 ccttttacaa agcgccaggc attcacccca tcatcaacca tgatggaggt gttccttcag
     1501 gagaagccac ctgcagtggc tacctcgaca gctgcacctc ctcccccctc ttctcctctg
     1561 ccaagcaaat ccacctcggc tccacagatg tctccggggt cttcggacaa ccaatcctcc
     1621 agccctcagc cggctcaaca gaaactgaaa cagcaaaaga agaaaacctc cttgacgtct
     1681 aagattcctg ctctggctgt ggagatgcct ggctcagcag atatctcagg gctaaatctg
     1741 cagtttgggg cattgcaatt tgggtcagag cctgtccttt ctgattatga gtccaccccc
     1801 accacgagcg cctcttcaag ccaggctccc agtagcctgt ataccagcac ggccagtgag
     1861 tcttcatcta cagtttcatc taatcagagt caggagtctg gttatcagag tggcccaatt
     1921 cagtcgacaa cttatacctc ccaaaataat gctcagggcc ctctatatga acagagatcc
     1981 acacagacac ggcggtatcc cagctccatc tcttcatcac cccaaaagga cctgactcag
     2041 gctaagaatg gtttcagctc tgtgcaggcc acgcagttac agaccacgca atctgttgaa
     2101 ggtgctacag gctctgcagt gaaatctgaa tcaccttcca cttctagtat accctctctc
     2161 aatgaaacag tacctgcagc ttccttactg acgacagcca gtcagcattc atcctcctta
     2221 agtggcttga gccatagtga ggagattcca aataccacca ccacacaaca tagcagtgca
     2281 ttatctacac agcagaatac cctttcttca tcaacatctt ctgggcgtac ttcaacatct
     2341 actcttttgc atacaagtgt ggagagtgaa gcgaatctgc attcttcctc cagcactttc
     2401 tctaccacgt ccagcactgt ctctgcacct cccccagtgg tcagtgtctc ctccagtctg
     2461 aatagtggca gtagcctggg ccttagcctg ggcagcaact ctactgtcac agcctcaact
     2521 cgaagctcag ttgctacaac ttcaggaaaa gctcctccca accttcctcc tggagtcccg
     2581 ccattgttgc ctaatccata tattatggct ccagggctgt tacatgccta cccgccacaa
     2641 gtatatggtt atgatgattt acagatgctc cagacaagat ttccattgga ttactacagt
     2701 atcccgtttc ccacacccac cactccactt actgggaggg atggtagcct ggccagcaac
     2761 ccttactctg gcgacctcac caagttcggc cgcggggatg cctcctcccc agccccagcc
     2821 acaaccttgg cccaacccca acagaaccag acgcagactc accacaccac gcagcagaca
     2881 ttcctgaacc cggcgctgcc tcctggctat agttacacca gcctgccata ctacacaggg
     2941 gtcccgggcc tccccagcac cttccagtat gggcctgctg tgttccctgt ggctcctacc
     3001 tcttccaagc agcatggtgt gaatgtcagt gtgaatgcct cggccacccc tttccaacaa
     3061 ccaagtggat atgggtctca tggatacaac actggtgtgt cagtcacctc cagtaacacg
     3121 ggcgtgccag atatctcggg ttctgtgtac tccaaaaccc agcagtcctt tgagaaacaa
     3181 ggttttcatt ccggtactcc tgctgcctcc ttcaacttgc cttcagccct aggaagtgga
     3241 gggcccatca atccagccac agctgctgcc tacccacctg ccccctttat gcacattctg
     3301 accccacatc agcagccaca ctctcagatc cttcaccatc acctgcagca ggatggccag
     3361 ctaccatatt tgcagatgat tctctgttgc cagcgccagc aggaggagca ggatatcctc
     3421 actctcgtcg atgaccagct tggtgaataa gtattaccgt accaactggg cctcttctag
     3481 caggctcgaa ggctgtggaa taaagtgaaa tctttgccct ttaagaactc tcaccttaat
     3541 gtgctaatat tttgccctta aggggattcc cttttacatc ctgtgactga aaagaaccac
     3601 tgcacatctt catttcttct agaaactgcc tcacctacag caagtttcag gaagtgaaag
     3661 gggaaggagc taaggacatt taaaaggaaa aggaccttgt gggaatctaa gcatgattta
     3721 aaggattctg aaatctgaag ccagcattat ctactgtctg gcagaaccaa attgtagggc
     3781 ttttttcttt ttggaggagt atagtagttc ttgtctgagt tatgtttttg agacaatctc
     3841 actatgtaac cctgactggc tagaagttgt aacccaactg gctggaagtt ggtgtggaga
     3901 ccaggctggt ctcaaattca gagatctacc tgcctctacc tcttgagtgc caaggttaaa
     3961 ggttctcagc actatacctt accttgcctt ttttatgtga ctttgaaatg cctaagtttt
     4021 gggaaaggag tggatgatgg tagagcaaga cctggggtgg ggacatggtg cagtaaaagg
     4081 ttttggac
//
