LOCUS       NM_001107928            4365 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus ubiquitin-associated protein 2 (Ubap2), mRNA.
ACCESSION   NM_001107928 XM_001068128 XM_039109841 XM_232901
VERSION     NM_001107928.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4365)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4365)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On or before Mar 4, 2021 this sequence version replaced
            XM_039109841.1, NM_001107928.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643286.16139.1,
                                           SRR26360181.2615102.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-99                JAXUCZ010000005.1  61232661-61232759   c
            100-236             JAXUCZ010000005.1  61209862-61209998   c
            237-314             JAXUCZ010000005.1  61192215-61192292   c
            315-425             JAXUCZ010000005.1  61189828-61189938   c
            426-579             JAXUCZ010000005.1  61184944-61185097   c
            580-657             JAXUCZ010000005.1  61182298-61182375   c
            658-712             JAXUCZ010000005.1  61181297-61181351   c
            713-816             JAXUCZ010000005.1  61178151-61178254   c
            817-882             JAXUCZ010000005.1  61173686-61173751   c
            883-935             JAXUCZ010000005.1  61170325-61170377   c
            936-1003            JAXUCZ010000005.1  61167826-61167893   c
            1004-1193           JAXUCZ010000005.1  61163156-61163345   c
            1194-1410           JAXUCZ010000005.1  61160762-61160978   c
            1411-1682           JAXUCZ010000005.1  61158204-61158475   c
            1683-1855           JAXUCZ010000005.1  61157453-61157625   c
            1856-2069           JAXUCZ010000005.1  61155946-61156159   c
            2070-2109           JAXUCZ010000005.1  61153665-61153704   c
            2110-2287           JAXUCZ010000005.1  61151430-61151607   c
            2288-2357           JAXUCZ010000005.1  61150629-61150698   c
            2358-2633           JAXUCZ010000005.1  61148969-61149244   c
            2634-2681           JAXUCZ010000005.1  61148672-61148719   c
            2682-2760           JAXUCZ010000005.1  61146584-61146662   c
            2761-2966           JAXUCZ010000005.1  61146184-61146389   c
            2967-3066           JAXUCZ010000005.1  61145820-61145919   c
            3067-3174           JAXUCZ010000005.1  61145623-61145730   c
            3175-3239           JAXUCZ010000005.1  61145485-61145549   c
            3240-3431           JAXUCZ010000005.1  61145203-61145394   c
            3432-4365           JAXUCZ010000005.1  61144182-61145115   c
FEATURES             Location/Qualifiers
     source          1..4365
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q22"
     gene            1..4365
                     /gene="Ubap2"
                     /note="ubiquitin-associated protein 2"
                     /db_xref="GeneID:313169"
                     /db_xref="RGD:1311717"
     exon            1..99
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            100..236
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     CDS             138..3527
                     /gene="Ubap2"
                     /codon_start=1
                     /product="ubiquitin-associated protein 2"
                     /protein_id="NP_001101398.2"
                     /db_xref="GeneID:313169"
                     /db_xref="RGD:1311717"
                     /translation="MMTSVSNDRCRGAREKPQMPTTHAAQSQKQVVQATAEQMRLAQV
                     IFDKNDSDFEAKVKQLMEVTGKNQDECIVALHDCNGDVNKAINTLLEGSSDTTSWETV
                     GGKKKNFGRESSENKENREKRTEREASRGRGNNNRKGRGGSRGREFKGEENGVDCSQG
                     DKPSERGKRTRGRGFGRGRGRGAGRLSAQSMGTFNPADYSESMSTDGCGTKLVVWEAA
                     QNGTDEGPEGLAKPHSISQELPSKSSYGLKGAWKNSVEEWTAEDWTEDLSETKVFTAS
                     SAPADNHVPPGQSIDLVALLHKPAPPTQAAEVNSFETSQQQGFGQALVFTNSQHNNPT
                     APGTASSTPASSYSPQSLSSVLGSGFGELAQSKMVNISNSQILDKLKPPGLSPFPAAS
                     STQQNDNASPPATTAAWDLKPSAPQPSVLSHLDFKSQPEPSPVLSQLSQRQQQQNQAV
                     SVPPPGLESFPSQTKHRESAPGDGPSTVNRLLQLPTMAVENIVSAHQPQPKHIKLPKR
                     RIPPASKVPVSAVEMPGSADITGLNVQFGALEFGSEPSLSEFGSTASASENSSQLPIS
                     LYPKSLSEPLNASFPMTSAVQNPTYTTSVITSSTLTSSSVSSTSPVTTCSSYDQSSVH
                     TRIAYQSPASPADAAPGSVANGHGGGRSQHTVDTTSSVPAPKKTDPSALPSVSSLPSP
                     SSCTALLPPSSQHTATLPALTPGELSSSPLSQLSSSLSSHQSSLSSTHATRSTSTPHT
                     HASVESTPSSAAFSAATSAPSAPSSGVALPGSMSTVSSLCLGGTTVSAPSSSTRATAL
                     VTSGKAPPNLPQGVPPLLHNQYLVGPGGLLPAYPIYGYDELQMLQSRLPMDYYGIPFA
                     APTALASRDGNLANNPYSGDVTKFGRGDSASPAPPTTPAQAQQSQSQTHHTAQQPFLN
                     PALPPGYSYTGLPYYTGVPGAFQYGPTMFVPPTSAKQHGVTLSTPPTPFQQASGYGQH
                     AYSAGYDDLTQGTAAGDYTKGGYGGSSQAPNKSAGSGPSKGVSVSSGTGLPDMTGSVY
                     NKTQTFDKQGFHTGTPPPFSLPSALGSTGPLAPGAAPGYAPAPFLHIMPAHQQPHSQL
                     LHHHLPQDAPSGSGQRSQPSSLQPKSQASKPTYGNSPYWTN"
     exon            237..314
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            315..425
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            426..579
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            580..657
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            658..712
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            713..816
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            817..882
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            883..935
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            936..1003
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            1004..1193
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            1194..1410
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            1411..1682
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            1683..1855
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            1856..2069
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            2070..2109
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            2110..2287
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            2288..2357
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            2358..2633
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            2634..2681
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            2682..2760
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            2761..2966
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            2967..3066
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            3067..3174
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            3175..3239
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            3240..3431
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
     exon            3432..4365
                     /gene="Ubap2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggccgcctct gccgccgccg ccgctttgta agaggcacat tggcaggtaa cgagcggcgg
       61 cggcggcggc gggtcccgag tccaacgaga gcagcagcga ttttgtattt tgtacataca
      121 ttttgtatat tctgtatatg atgacttctg tgagcaatga tcgttgccga ggtgctcggg
      181 aaaaaccaca gatgccaaca acacacgcag cacagtcaca gaaacaagtg gtacaggcaa
      241 cggctgaaca gatgcgactt gctcaagtga tctttgataa gaatgattca gattttgaag
      301 ctaaagttaa acagcttatg gaggtgacgg ggaaaaatca ggatgagtgc atcgtggccc
      361 tgcatgactg taacggtgat gtgaacaaag ccatcaatac actgctggaa gggagctctg
      421 acaccacttc atgggagact gtaggaggaa agaagaagaa ttttggaaga gaaagctcag
      481 aaaacaaaga aaacagagag aagaggacag agagagaagc aagtcgagga cggggaaaca
      541 acaaccggaa gggacgaggt ggcagccgag gccgagagtt caaaggtgaa gagaatggag
      601 ttgattgcag ccaaggagac aaaccttcag agcggggcaa gcggacccga ggcagaggat
      661 ttgggcgtgg caggggcaga ggggcaggaa ggctgtctgc tcaaagcatg gggacattca
      721 atcctgcaga ctattcagag tccatgtcaa cagatggctg tgggacaaag ttggtagttt
      781 gggaagctgc tcagaacggc acagatgagg gacctgaagg gctggcaaag cctcacagta
      841 tatctcagga gctgccaagt aaaagttctt atggacttaa aggtgcctgg aagaattctg
      901 tggaggagtg gacagcagaa gactggactg aagatctttc tgagacaaaa gtattcacgg
      961 cttcatccgc tccagcagac aaccatgtcc cgcctgggca gagcattgat ctggtggcct
     1021 tgctccacaa acctgctcct cccactcaag ccgcagaagt caactccttt gaaacgtccc
     1081 agcagcaggg cttcggccag gcccttgtct tcacaaattc tcagcacaac aatccaacgg
     1141 caccagggac tgcaagctcc actcctgcta gctcatactc tcctcagagt ttgtcatccg
     1201 tccttggctc aggatttgga gagctggctc agtcaaaaat ggtgaacatc tccaactccc
     1261 agattttgga caagttgaaa ccaccaggtt taagcccgtt tcctgctgct tcaagcacac
     1321 agcagaatga caatgcgagc cccccagcca ccactgctgc ttgggacctc aagccctcgg
     1381 caccccagcc ctcagtcctc agtcatttgg acttcaaatc tcagccggaa ccatctccag
     1441 ttctcagcca gttgagccag cgacagcaac agcagaacca ggcagtcagt gttcctcctc
     1501 caggtttgga gtcctttcct tctcagacaa aacaccgaga atcagcaccg ggagatggtc
     1561 cttctactgt caacagactt ttgcagcttc ctaccatggc tgttgaaaac attgtatctg
     1621 cccaccaacc acagcccaaa cacattaaac tccctaagcg ccggattcct ccagcttcta
     1681 aggttcctgt gtccgcagtg gaaatgcccg ggtctgcaga tatcacaggg ctgaatgttc
     1741 agtttggggc cctcgaattt ggatcagagc catctctctc tgagtttgga tcaacagctt
     1801 cagccagtga aaatagcagt cagcttccta tcagcttgta cccgaagtct ttaagtgagc
     1861 ccttgaatgc ctctttccca atgaccagtg ctgtacagaa ccccacctac acaacctcag
     1921 tcattacctc ctccactctg accagctcgt ccgtgagctc cactagccca gtaacaactt
     1981 gttcctctta cgaccagagt tctgtgcata ccaggattgc gtaccaaagc cctgcaagcc
     2041 cagcggacgc ggctcccggc tccgttgcta acggacatgg tggtggccga agtcagcaca
     2101 cagtagacac tacttcatcc gttccagctc caaagaagac agacccttct gcccttccgt
     2161 ctgtgagctc cctccccagc ccctcctcct gcactgcact tctgccccct tcgtcccagc
     2221 acactgccac tttgcccgcc ttgactcctg gtgaactgtc cagcagcccc ctttctcagc
     2281 tcagcagctc cctctctagc caccagagca gcttgtcctc tacccatgca acgcggtcca
     2341 caagcacgcc acacactcat gccagtgtgg agagcacccc atcctcagct gccttctcag
     2401 cagccacttc tgctccaagt gccccgtcct caggggttgc cctgcctggg agcatgagca
     2461 ccgtgagcag cctgtgcctg ggtgggacca ctgtgagcgc acctagcagc agtaccaggg
     2521 ccacagcctt ggtgacctca ggcaaagcac ccccaaacct tcctcaaggg gtgcctcctc
     2581 tgctacacaa tcagtacctc gtgggccctg gagggctgct tcctgcttac ccgatctacg
     2641 gttatgatga gctccagatg ctgcagtcac ggctgccgat ggattactat ggaattccct
     2701 ttgcagcacc cacagccctt gccagccgag atgggaatct agctaataat ccatattcag
     2761 gtgatgtcac caagtttggc cgaggagact ctgcatcccc tgcacctccg acgacaccag
     2821 ctcaggcaca gcagagccag tctcagaccc accacacggc ccagcagccc tttttgaatc
     2881 ctgctctgcc acctggctac agctacaccg gcctccccta ctacactggc gtgcctggtg
     2941 ccttccagta tgggcccact atgtttgtcc ctccaacctc agccaagcag cacggtgtga
     3001 ccctcagcac tcccccgacc ccttttcagc aggccagtgg ctatgggcag catgcttaca
     3061 gcgcaggtta tgacgatttg acccagggaa cagcggcagg agactacacc aagggtggct
     3121 acggtggatc atctcaggca ccaaacaagt cggctggttc tgggcctagc aaaggggtat
     3181 cagtatcttc aggcactggc ttacccgata tgactggttc tgtctacaac aagacacaga
     3241 cttttgacaa gcagggattt catacaggga ctccaccacc tttcagcctg ccctctgcct
     3301 tgggctccac tgggcccctg gctcctggcg cagcccccgg ctatgcgcct gcgccgttcc
     3361 tgcacatcat gccggcccac cagcagcccc actcccagct gctgcaccac cacctaccac
     3421 aggacgcccc gagtggctct ggtcagcgca gccagcccag ctccctgcag cccaagtctc
     3481 aagcctccaa acccacctac ggcaactctc catactggac aaactagatc ctgaaaagga
     3541 gagggtgggc tcttgggcag ggtatactct gggcaggaga gaacacatgg agcacatttc
     3601 tgggagcccg gtgcccttcc tagaattctg agacataact gtcagctgag cctctctatg
     3661 ggaagcctgc ctcccagacc cactattgta tgtaatgtat ttatgtatgt atttgtaaat
     3721 gtgatagaag cctggaagag ctgggctgtg gctacgggta gcatacaagt gtgctctccc
     3781 ggtctggaca ccgttactat agccaagtag gccccaaccc cacctttctg cctgcagtct
     3841 ttctatgtga ccccagctca gtgggctgct gggtgtgcca ctgaaggact cgtggtttgg
     3901 ggccaggtca gtaccaatga agaatcacga cttatctcac tccctgtgaa ccattatgtt
     3961 tttccctctg taattacttc atacttgttt ttgaaaaact gatccttttg tcatttgtca
     4021 tggtccccct tccaacaaat cttaatctgg aaatagaagt gacccctgtc cagcataagc
     4081 ctggtgccta tatgtctgcg cacagcaggg gcttctgctt tgggtctggt cctgctctag
     4141 agacttgtct tttctgacca accatttaaa aaaaaatctg aactacgtct cagagatgtt
     4201 cagccagtca gctcctttat aaagaaatca aagatctgct tccttctcag tgaaagcctg
     4261 tctccaaaca aaggctcctt tataccagtt gtcctgagcc aggtgggcaa ctgtttcagg
     4321 gttttctctc gcccaaactc cacctaataa agttctgaga gcatg
//
