LOCUS       XM_039082471            8883 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ubiquitin associated protein 1-like
            (Ubap1l), transcript variant X1, mRNA.
ACCESSION   XM_039082471
VERSION     XM_039082471.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082471.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8883
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8883
                     /gene="Ubap1l"
                     /note="ubiquitin associated protein 1-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 2 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 72 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:691572"
                     /db_xref="RGD:1582742"
     CDS             7454..8596
                     /gene="Ubap1l"
                     /codon_start=1
                     /product="ubiquitin-associated protein 1-like"
                     /protein_id="XP_038938399.1"
                     /db_xref="GeneID:691572"
                     /db_xref="RGD:1582742"
                     /translation="MNALDGVPFKVPKGFVMNTEPHPVPELSVRDCRELLLGTMYDFS
                     LEKKALFWVEAAVRGSCPHQCNDLGIASAPPAWFLLVNPNYSQVPAPAEIRDPETGQQ
                     EPPEEEDEEEEETEEKRDEEEASSTSEEGMDSSSPQPGSPTSHRRCSLDVLRNMRSEL
                     ADARRRLSESRLATSPRALLHRFRAHRTLSLSASPAPTPGPALQPPNVSELPPRPSTA
                     GAMPPLRSHKPTVASLSPYTCLPPLRETPQPLASCRLHPDSAPDLLSALTKEEQDLIR
                     PVVALGYPLGRAIVALQKTGRQSLSQFLGYLSACERLLRQGYDEALVDEAMEMFQFSE
                     HQAGEFLRLWQQFSDMGFQQDRIKEVLLVHGNQREQALEELVACAQ"
ORIGIN      
        1 aaattatgtc ttatttctaa ctagcttcat tttttttgaa tgatacatta aaaaaacaaa
       61 cttctttcag ctgatttatc attctggttc actttgtgag ttaagctgag tgaactttgt
      121 actgtacgtt ttcgtatgtc tacacagaag ttcccgatgt gccacgcctg gctgcagctg
      181 aagattttgt ttccaaagca gattccattt gcctttggaa tgcatttgtt tatcataatc
      241 tctgaagcaa aaaaatgagg tgtttgaggc agatggcgtt agacttgtgt aactgcacgt
      301 cagcagacag ttgttgacct tattcatgtg aagatgaaga agccaggatt tgagctgtgt
      361 cctttggaag atggcttttt gttttccatt tttctgggta ctgtaattta ggtgctaaga
      421 ggataaggag tagacaggat tcctggcttc ctggtattga tggttctcca tcttactccc
      481 tcagactagc cttgacttcc tcatagcttg gcagatagag ctcttcgttg tcactatgat
      541 ggtgctacaa aggacatgct gacacctccg tagtctcatc ccccagatat ttcataaaaa
      601 gtgcctgtgg atgctaaaaa aataccccaa gaccccacaa aggacgtggg ctagaaggaa
      661 gatacccatt gatacaattg ttttgagaac cttgaaggtt ctaagtggga attgtcttca
      721 gacatagcac atttaaatga gatcgtataa actgtcctgt aagacagact gtcctgttac
      781 tgtcctacct gcatgtgtgt cctggttcac tgagtacact ggggacagag aggatgggca
      841 gggggaggta gaaatgtaca tcagttagca gaatccttgc ctagcatgca tgaagtcctt
      901 caacccttag caccccataa aaccagattc ccatgcttaa ggggtgaagg caggagtatc
      961 agaaattgaa ggcctcctcg gctgtttaga aattcaagga tggtctggag gaactgcctt
     1021 taacatgatt caggaaggtt cctggagaag gctgctgtag gcaggtgatg tttcagctct
     1081 ggggaaaata aaagctttta aatagtgtat gagagaagag acccgaacgg agacagtatc
     1141 aggagtagct ggcagggatg ctgttggggc caagggacca ctgcaaatag agggcattcg
     1201 ggctggggct acatggctaa gaattgagct attgcaaatc tccagaagtt taatttttat
     1261 ttggaaagca tctgagggct atgaaaagag gaaggattgg agcttaattt tgcagcttga
     1321 aatgatcctg cttctgggtg tggaacaaaa atacagtaat agtaatagca cacaagaata
     1381 tgaacggaag tgagttgtgc cagtgaggtg tgccaccagc atggtagcca tggacatagg
     1441 gtgacgtgca cacccttaaa cttcgaggag gatttgagat gggaggtggt aagagtaagt
     1501 gtctgagtga gtcggcacct ggatgggtca tcatcatacc atgagacaaa gctctgggga
     1561 agggggttta tttgggggaa gaaaggtgaa attcactcga gttagaagca cttggaggag
     1621 ctttagaggc aggtgaaggg acagaatgtg agggttgctg gcaggtaatt gaagctctaa
     1681 gcaaggatgc agtcctttag aagacatcgg agagtcattc tgtgagaccc cattccagtc
     1741 cccagccccg tacctagatg ttgccggtgg acaggcctca gctgggaatc tgagaagtgc
     1801 tggactgtag ttttcggagt cattgaagca cgaatacccc tgctttcctt gtgcaccccc
     1861 acccccaccc ccaccctacc ccaatacctc agggctttct cggccaccta gtgtttggag
     1921 tcagaactca aaattcagaa tcctccccag gaggacccca atctacccaa gagtcttgct
     1981 gcagactgca cacagcattt acatatttgt gacccatcac cccatcctgc agggtcttgt
     2041 atctgcttcc tgttccttct ccggatgcct gctcttgatt cttttccagc tcacaattca
     2101 tcctcctacc ctttgatagc caggcaaatc cgatctgttt cctaaagctt tcccaagccc
     2161 cacaaggaca aggccgcccc tccctcccag aggcactcct cggtgcatcg gtgcatcgtt
     2221 aaatgttcta actagctctg agttcaccct ggccccttgc tgttcttcag aaagagatag
     2281 atcctcagaa tcttcaaact agaagcccat tcaggactgt gcagaaaaca gttgttaggg
     2341 atgcagatgt caagtggaag atgaggagag agggattgtt ttgtctgtat ctcaagtgga
     2401 caagatttta cacttgagcc tcaatagaag ctggacccgt ctctgtaatt caagatttca
     2461 gtgatagctg agactgaaag ctaaatctga cgatagtaaa acctgtggaa ttttcctgag
     2521 cctcctgtaa caccctttga cctcactggt ccccgtaaca atgagccaat caagcagatt
     2581 gtggtggtta ccccaagatt tgcttgatct ccctcataga ggggcataga gagctacccg
     2641 ctgaggtgca gggatgtgaa ttccggcatg aagcgttgag tcctaaaggc aggaagacac
     2701 tgatgagaac agacagatgg gggaggagat aggggaatta agggctttag ccacctgcca
     2761 tcacgtgacc tgttttttgc tcccagatta cccaccctag ctctccacaa ggctgtccag
     2821 ctaggaacag gatgaccgcc cagtgacccc aagcagcagg gttttgtgtc gtcctgttgg
     2881 tgatgacaga ttaatgtgtg gaaccagagt cacaccctgg tccaggctcc tactgtttgc
     2941 aaactgtcag gctatatatg atcaggttac tttgtactta ctttgaggtt aaatccatgt
     3001 gaaagaggtt ggtttttgtt gttgttgttg ttttgttttg ttttttttgc tttgttttgt
     3061 cgctgttttg ttttgctttt ttccaaaaca gtgaactcct tgcattacta aaccaagggc
     3121 gaatactata caatgccatc caaaagctaa gtgatatgta gatgagtttt taattctagg
     3181 atttcagcct tggtagatac tatggaccag tactgaccac ttccttacat gcatggagga
     3241 ctaggacttc taactttaat ccagtttatc agtattgtct tcatcgctag tatttttctt
     3301 tgtgtgtatt tatatacacg tgatactgga caattgacca agggcttctt gtctgctaag
     3361 caagcactct gccactgagc tcttgcgctc tatagcccca gcccttctct tacctttacg
     3421 tagaatatca ctaaattgcc caggctagac ttaacctcat tctaaagccc aggtaggcat
     3481 tgaacttgtg atgctcctgc ttctctcaga cttctgagta gctgggatca tagacctatg
     3541 ccacccagac ctctgtatcc ttggtctttt tgtaaacttc tttccaaagc agccccaaac
     3601 tcccatttgc ataaccactc agccatttca taaccactca gccatttcat aaccactcag
     3661 ccattgcata agcactcagg atctgctgtt cctgcacaac ccggatggaa ccgtgaactc
     3721 tggagacaga gtcatctgtg ctgctctcat ctacaaggac tacactctca ccccaatgtg
     3781 cccatctacg agggttgtgc tctaacccac accatcctgc atatgaacct ggctgtctta
     3841 gacctgaaag attaccccat gaagatcttg actgagcatg gctacagctt ttgccacagc
     3901 cgaaagggaa gttgtccatg acatcgagga gaagccgggc tatgtcatcc cggacttgga
     3961 acaagagcca gccattgctg catcctcctc ctccctggag aagagctact agctacccta
     4021 caaccaggcc atcactattg gcaaaaagca gttccattgc gtccaggcat tcttccagct
     4081 ttccttcctg gctatgaaat ctggcgacat ccagaaaact gtcattttca ttgtaaagtg
     4141 tgatgccgac atctgtaaag gcctccatgc caactagtga tgtcggtggc accaccatgt
     4201 acccaggtat catcagcaag gtgcaggaga tcactgctct ggctcccagc tctgagaaga
     4261 tggaggtcat tgcttctctg agcacaggta ccctggattg gcagccgcat cccgaccttg
     4321 ctgtttactg tccagccaat gtggctggac aagcagaaga acaatgaatc cggctgcttc
     4381 cccaaccaac gacagtgctc tgggtacaac ttttctcaac aaaacctaac ctgtgcagga
     4441 aaacaaacat aagacaacat cggcatggct ttgtgttttg ttttaatttt tgttttgttt
     4501 tgttctggtg ctgttgactc agggtttaaa aactgcaaca gcgaaggcga ccgcggttgg
     4561 ttggaccagc atcctcgagg ttgtactctg tggctgaaca ttgattgtac atttttgttt
     4621 aataattcca atgagatgct tgttacagga agtccttccc cctactctag aaaggaagat
     4681 ggctcagtcc gtgccgagtt catgaaaggg aagtgacagt attgcttttg cataaattat
     4741 actcattgca gattttaaaa aaatgtttct gccttaatac tttttaattt ttgtttttat
     4801 tttcaaatat tcagtcatca tggtttccgt ttttgttccc ccagcttgag acatgtgaag
     4861 gctttggtct ccctgggcgt gggctgagat ggtaacgcag ccaaaggctt acctgtgctc
     4921 agttttcaga tcggtttaat aaagtgaacg acttacaaac actcagaagg atctgttcta
     4981 gaatagaaag atgacccacc tgttgggagc ccttgctgct ctttgaatgg acctggttta
     5041 gttcccagca cctacacatg gtggcttaca actgtgacac agttccagga catctgaggt
     5101 cctctcctag tctctaaaag cacagggcac aacatgcagg caggcaaaac attccaaatt
     5161 taaaagagaa atatttgttt atcccaacac gatggcatat actctttaag cttcattgtc
     5221 ttgtctttgc cgtttacatc tagaactgta gggttgaagt tagcacatga ggtgagggag
     5281 aagccagtga ttcccagtcc tgaggttctt tcatgcggag caagggacac taccattgca
     5341 ctatgtcttc aggcccaaga cggatattat gttgactcag aacatttatt gaaaagtctt
     5401 ttctactgtt ctacagagca aaatatctca ttagtcaagg gtctgtattg tgtgatctgc
     5461 ctctgcacta ttcactcttc tgctgcctgt gaagggactt gggtcacctg ccacccatgg
     5521 ttggttggtt ggttggttgg ttggttggtt gggggatatt agtgtttgct tgtttgttgt
     5581 tttggtttgt ttgcttgttt tttagctttt gaaaaaaggg tcttactatg tagccctgac
     5641 tgcttggccc tcacttctag aacgggctag cttggactca cagatactct ccaaattctg
     5701 tctcccagtg gtagagttcg ggttctccat ctgtctctct tggtatgcct ctttcccata
     5761 tctctgccct cttgcattct ttccttaaga ttgcctggtg ctagggagat ggctcagtgc
     5821 ttacaagcac tttctgtgcg tacagaggcc aacagttagg ctccaaaccc cgtgtccagc
     5881 agctctcaac tgcctgcatc tccaccccag gcgatccagc actctctggg aaactgtgca
     5941 caggatccca ggaatcagct gcattcatgc agatatacat acaaggtaaa agaaactgtc
     6001 ctggcttttc ttggttcttt gtatcccatt taattttaga attagcatgc caagttacac
     6061 caaaactgtg atagaatttt gatccttggg atctgtacat tagtttgcag agaattatat
     6121 attgaagttg atcattttcg accagagtat gttcctccat ttaatctaat aggttttagt
     6181 tttctttttc tttttttttt tttttttggt tctttttttc ggagctgggg accgaaccca
     6241 gggccttgtg cttcctaggc aagtgctcta gtttttagtt ttctatgtag aggccttaca
     6301 tatactgtgt tagattaagt cctgttggtg gctataatat cagtaaatac cagttgtcta
     6361 tcttttaata agtcactctt tgatcaattt atttatttat ttatttattt atttatttat
     6421 ttatttaggt ttttcaaggc agggtttctc tgtgtaacag ccctggctgg ccaggaactc
     6481 tctttgtaga tcaggctgcc tgtgaactca cagagatgcc tgcctccccc tcaaagtgcg
     6541 gggtgggggg ggggggcgga ttagaggtgt gggccaccag gccctgcttc tttaattaca
     6601 ttttaaaaat gcttttacat ggcttgttgt ttgcatatag ggaaaagtta ctttgtatgt
     6661 cgactgtgta tccagtgtcc tttccaaatc gtgttactaa ttcgaagagt tctgttcata
     6721 agattccttt ggacttggct ctaataactg tgtcatctac aaataacagt tgttttcctt
     6781 ctttccaatc tgtttctgta ttagctttct cccttcttgc acaagctagc atctggtgtc
     6841 atgctaaaca gaagagctgg tagtctgata ccttgcttca ccgccagccc taagaacatc
     6901 ttttattatt tactgtggaa tggagtgttt gctgtaattg gttagattcc tcagttgagg
     6961 aagttgcctt ttagcctata gagatgtata cttttttgtt gttgttgttc tttaaaaatc
     7021 tattatttca ttattatata tatatgcacg tgcatataca ttgtagcatt tatgcggagg
     7081 ttgggggaca acttgcagaa gaacgcccca ggtttgaatt accaaaccag gaaaataatt
     7141 gaaaaataat ctcgtaatgt tttaagtaag tttatagttt tctattgggc cctattcata
     7201 gctatcttgg ggtgcatgca gcctgtgggc ccggcttgga catgcctgat aatgtaactt
     7261 agacataaaa cagctctggg ttttactcat ttcttctctg aacaacactg gctgctacat
     7321 cttttccttc cagctgtgag ggccaccgca taggagagtg tggcctgagc ccagttctga
     7381 gaacccgaca cgctctccct gccatctggc tacttgctca gcccttctga gactgtcacc
     7441 attctctggc agaatgaatg ccctcgatgg tgtccccttc aaggtgccca agggctttgt
     7501 gatgaacaca gagccccacc ctgtgcctga gctcagtgtc cgggactgta gagaactcct
     7561 actgggcacg atgtatgact tcagcctgga aaagaaggct ctcttctggg tggaagcagc
     7621 tgtccgagga tcttgccccc atcagtgcaa tgacctgggg attgcatcag cccctccagc
     7681 ctggttcctg ctggtgaatc caaactacag tcaggtgcct gcacctgcgg aaatcagaga
     7741 cccagagact ggacagcaag aacctcctga ggaggaggac gaggaggagg aagaaacaga
     7801 agagaagagg gacgaggaag aggcctcctc taccagcgag gaagggatgg actccagcag
     7861 ccctcagccc ggttccccta caagccatcg tcgctgctcc ctggatgtgc ttcgaaacat
     7921 gaggtctgag ctggctgatg ccaggcgacg gctctcggag agcagactag ccacaagtcc
     7981 tcgagccctc ctgcaccgct tccgagccca ccgcacgctg agcctgagcg ccagcccagc
     8041 tccaacccct ggcccagcac tgcagccccc caacgtctcc gagctgcccc cacgaccctc
     8101 cactgctggc gccatgcctc cattgcggag ccacaagcct acagtagctt ccctcagccc
     8161 atacacctgc ttgccacctc ttagggagac accccagccc ctcgcctcct gtagactgca
     8221 tcctgattca gcacctgacc tgctgtctgc cctgaccaaa gaggagcaag acctcatcag
     8281 gccagtggtc gccttgggct atcccctggg aagggccatc gtggcactgc agaagacagg
     8341 gaggcagagc ctgagccagt ttctcggcta cctcagtgcc tgtgaaaggc tgctgcggca
     8401 gggctacgat gaggcactgg tggacgaggc catggagatg ttccagttct ccgagcatca
     8461 ggcaggggag ttcctgaggc tctggcagca gttcagtgac atgggcttcc agcaagaccg
     8521 tatcaaggag gtgctgttgg tccacggcaa ccagcgtgaa caagccctgg aggagctggt
     8581 agcctgtgcc cagtgacaag ccaggacgct gtttgatgca tgactgacag tgaggtcagt
     8641 cctgccaccc atcccagctg tatcattaaa agataatgct gctggtggtg gtggcacaca
     8701 cctttagtcc tagcactgga gctgcagagg caggcggatc tctgagttca aggccatcct
     8761 ggtctacaca gtgagttcca ggacagccag ggttgcatag agaaaccccg tcttaagaaa
     8821 accaaacaca gtaatcataa taaatgaaat aaaataaaat aaacaaaacc taacaagacc
     8881 aaa
//
