LOCUS       NM_001012190            2662 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ubiquitin-associated protein 1 (Ubap1), mRNA.
ACCESSION   NM_001012190 XM_342821
VERSION     NM_001012190.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2662)
  AUTHORS   Stefani,F., Zhang,L., Taylor,S., Donovan,J., Rollinson,S.,
            Doyotte,A., Brownhill,K., Bennion,J., Pickering-Brown,S. and
            Woodman,P.
  TITLE     UBAP1 is a component of an endosome-specific ESCRT-I complex that
            is essential for MVB sorting
  JOURNAL   Curr Biol 21 (14), 1245-1250 (2011)
   PUBMED   21757351
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083594.1.
            
            On Feb 11, 2005 this sequence version replaced XM_342821.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083594.1, SRR8487226.126508.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132262, SAMD00132263
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2662
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q22"
     gene            1..2662
                     /gene="Ubap1"
                     /gene_synonym="UBAP-1"
                     /note="ubiquitin-associated protein 1"
                     /db_xref="GeneID:362502"
                     /db_xref="RGD:1305186"
     exon            1..201
                     /gene="Ubap1"
                     /gene_synonym="UBAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            202..242
                     /gene="Ubap1"
                     /gene_synonym="UBAP-1"
                     /inference="alignment:Splign:2.1.0"
     CDS             209..1717
                     /gene="Ubap1"
                     /gene_synonym="UBAP-1"
                     /note="UBAP"
                     /codon_start=1
                     /product="ubiquitin-associated protein 1"
                     /protein_id="NP_001012190.1"
                     /db_xref="GeneID:362502"
                     /db_xref="RGD:1305186"
                     /translation="MASKKLGTDFHGTFSYLDDVPFKIGDKFKTPAKVGLPIGFSLPD
                     CLQVVREMQYDFSLEKKAIEWAEDIRLIQEAQQEAERKSEEAEAKVNSKSGPEGDSKV
                     SFSKTHSPATMPPPINPILASLQHNNILTPTRVSSSATKQKVLSPPHTKADFNPADFE
                     CEEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDSNTPRGNSGSVLQDEEVLASL
                     EQATLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIPTVSNIKSLSFPKLDSDDS
                     SQKTVRLASTFHSTSCLRSGASRNFLKPSTQSSASELNGDHALGLSALNLNSGTEVPA
                     LTSSQMPSLSILSVCTEESSPPSTCPTVTPLNFSVSQVPTMPSCPQAYLELQALSPSE
                     RQCVETVVNMGYSYDCVLRAMKKKGENIEQILDYLFAHGQLCEKGFDPLLVEEALEMH
                     QCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARAEAS"
     exon            243..367
                     /gene="Ubap1"
                     /gene_synonym="UBAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            368..1291
                     /gene="Ubap1"
                     /gene_synonym="UBAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            1292..1474
                     /gene="Ubap1"
                     /gene_synonym="UBAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            1475..1576
                     /gene="Ubap1"
                     /gene_synonym="UBAP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            1577..2637
                     /gene="Ubap1"
                     /gene_synonym="UBAP-1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaggaggag ggaagtaggc cttcaacatg gcggctgtgg tactggcggt ggctacggtg
       61 acggtctggt tcggggcggg tagagttgga agaggtggtg ttcgctctcc ctaggggcag
      121 cgggagccca gcggagactg agcccgggag gccgggcggc gccagcacct ttcagctttt
      181 cgggacggca gcggcattca ggttctaaat ggcttctaag aagttgggta cagattttca
      241 tgggactttc agttatcttg atgatgtccc atttaagata ggagacaaat tcaaaacacc
      301 agcgaaagtg ggtctgccta ttggcttctc cttgcctgac tgcttacagg ttgtcagaga
      361 aatgcagtat gacttctcct tggaaaagaa agccattgag tgggctgaag acattagact
      421 aatccaagaa gctcagcaag aagcagagcg gaagtccgag gaagcagaag ctaaagtgaa
      481 ttctaagagt ggtccagagg gtgacagcaa agtgagcttc tccaagactc acagtccagc
      541 cacaatgccg cctcctatta accccatcct tgccagctta cagcacaaca acatcctcac
      601 tccaactcgg gtcagcagta gtgccacaaa gcagaaagtt ctcagcccac cccacacgaa
      661 ggcagatttc aatcctgctg actttgagtg tgaagaggac ccatttgata atctggaatt
      721 aaaaaccatt gacgagaagg aagagctgag aaacattctg gtaggaacca ctggacccat
      781 aatggctcag ttactggaca gtaacacacc caggggaaac tcgggctctg tgttacagga
      841 tgaggaggtc ttggcatcct tggagcaggc aactttagat ttcaagcctc ttcataaacc
      901 caatggcttt attaccttac cacagttggg caactgtgaa aagatgtcgc tgtcttccaa
      961 agtgtcccta ccccctattc ctacagtaag caatatcaaa tctctgtcct tccccaaact
     1021 tgactctgac gacagcagtc agaagacagt caggcttgcg agcactttcc atagcacatc
     1081 ctgcctccga agtggcgcat cccggaattt cctaaagcct tccacccaaa gcagtgccag
     1141 tgagctcaat ggggaccatg ctcttgggct ttcagctttg aacttgaaca gtggcacaga
     1201 ggtgccagca ctgacgtcct cccagatgcc ttccctgtct atcttgtctg tgtgtacaga
     1261 agaatcgtca cctccaagta catgtcccac agttacccct ctaaatttct cagtgtcaca
     1321 agtgcccacc atgcctagct gtccccaggc ctatttggaa ctgcaggcac tgtctccgag
     1381 tgagcggcag tgtgtagaga cagtagttaa catgggctac tcatatgatt gtgtcctgag
     1441 agccatgaag aagaaaggag agaatattga gcagattctc gactatctct ttgcacatgg
     1501 acagctttgt gagaagggtt ttgaccctct tttagtggaa gaggctctgg aaatgcacca
     1561 gtgttcagaa gaaaagatga tggagtttct tcagttaatg agcaaattta aggaaatggg
     1621 ctttgaactg aaagacatta aggaagtttt gctattacac aacaatgacc aggacaatgc
     1681 tctggaagac ctcatggccc gggctgaagc cagctgagac caggccctgc cacggccttg
     1741 ccacggcacc accattcccc aaggaggccc tgcacagctc acttgtgggg aagacgggac
     1801 atgcttccag attttctttg ggggttagaa ggtcagatgt ggaggtgaca cttgctctgg
     1861 gagcccaggc ctgagctggg gcaaagtagg aagacttggg catacatata tgccctctac
     1921 tggttccttt gatattaaac atctgtattt tgagaagtgt ccttcccact ttggcctttc
     1981 aggaagaata cttatgttct cagccaaaac ctagcctggc taccaagagt gggaagacag
     2041 gagcagattg ctgctgctct ggggctagac gctgtcctct ctgctgcttc actggcagac
     2101 tgggctctaa cccaagtgga atgcaactga gaggttcttc cggggcccgc cttcccccac
     2161 acacagccct tagtgttaca ctggttctgg aatgtctctg cggtacaaag atgcactttt
     2221 cctcatgggg caaagtctgc ctcttctgcc aggcagttcc catgtgcccc tcttcagact
     2281 gtttcttttg gcttagacca taatcctctg ctgcccaggg cattggagcc cctgtgctag
     2341 gaagctgtaa gcagtttgag taatcatcgg ctccttccca gcacattgat gaggaaacag
     2401 gccacgactt gtcactcagc actaaccccc agttgttgaa cagccttctc cagccctgct
     2461 ttaggatgac aaatgaataa cacctaggca tagaaaccag tctctctggt ttgtttgtat
     2521 tatgttcttc aacattaaag atttaaacaa caaaggatat actacagtct tgaatctaaa
     2581 gtaatttgct aactattttg attcttcaga gaactactaa taaaaatcta aaaggtaaaa
     2641 aaaaaaaaaa aaaaaaaaaa aa
//
