LOCUS       NM_001007668            1343 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus UBA-like domain containing 1 (Ubald1), mRNA.
ACCESSION   NM_001007668 XM_220163
VERSION     NM_001007668.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1343)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 1343)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC079459.1.
            
            On Nov 29, 2004 this sequence version replaced XM_220163.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079459.1, FQ228825.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..1343
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..1343
                     /gene="Ubald1"
                     /gene_synonym="Fam100a; RGD1359443"
                     /note="UBA-like domain containing 1"
                     /db_xref="GeneID:302941"
                     /db_xref="RGD:1359443"
     exon            1..173
                     /gene="Ubald1"
                     /gene_synonym="Fam100a; RGD1359443"
                     /inference="alignment:Splign:2.1.0"
     CDS             54..584
                     /gene="Ubald1"
                     /gene_synonym="Fam100a; RGD1359443"
                     /note="protein FAM100A; family with sequence similarity
                     100, member A; protein FAM100A-like"
                     /codon_start=1
                     /product="UBA-like domain-containing protein 1"
                     /protein_id="NP_001007669.1"
                     /db_xref="GeneID:302941"
                     /db_xref="RGD:1359443"
                     /translation="MSVNMDELKHQVMINQFVLTAGCAADQAKQLLQAAHWQFETALS
                     AFFQETNIPYSHHHQMMCTPANTPATPPNFPDALTMFSRLKASESFHSGGSSGSPMAT
                     SATSPPPHFPHATGSFATPSWPTAASPPGGPQHLQPQPPLWTPAPPSPTSDWPPLAPQ
                     QATSEPRAHPAMEAER"
     exon            174..233
                     /gene="Ubald1"
                     /gene_synonym="Fam100a; RGD1359443"
                     /inference="alignment:Splign:2.1.0"
     exon            234..1317
                     /gene="Ubald1"
                     /gene_synonym="Fam100a; RGD1359443"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggacgcgtga ggctagcgcg cagggaggcc ggagcgggct gcgcggcggc gccatgtccg
       61 tgaacatgga cgagctcaaa caccaggtca tgatcaacca gttcgtgctg acggcgggct
      121 gtgcggccga ccaggcgaag caactgctgc aggcggccca ctggcagttc gagacagccc
      181 tcagcgcctt tttccaggag accaacatcc cctacagcca ccaccaccag atgatgtgca
      241 ctcccgccaa cacccctgcc acgcccccca acttccctga tgccctcacc atgttctccc
      301 gtctcaaggc ctctgaaagc ttccacagtg gtggcagcag cggcagccca atggccacgt
      361 cggccacgtc acccccaccg cacttccccc atgccactgg cagctttgca acacccagct
      421 ggccaactgc agcctcgccc ccaggaggcc cacagcacct ccagccgcag ccgcccctgt
      481 ggactccggc acccccttcc ccgacttcag actggcctcc cctggctccc caacaggcca
      541 cctcagaacc aagggcccac cctgccatgg aggcagagag ataagggagg cccctccccc
      601 ctcccggagg ccagaacccc gtggggtggg ggagaggatg tctccgtggg ccccttcacc
      661 cctcctctgt ctgcacccct aaaccccaga gccctggagg ggagagactg gactctagcc
      721 aggcagtctt gtgccagcac tcagctgcac gcacgcacgc aagttcacag cacaggcacc
      781 cccagctcgc atggatctga ctcaaagtgg cttgggtgcc tagtgggcag caccttggag
      841 accaagcagc catcccaacg aagacttacc tgcctggccc caccacctgg agtgtttcag
      901 agaatcactt ggtggcagac acatgatgac tcctgtcttg gggccagtag gcctagatcc
      961 ctacccttgg gaatgcagag ccttctccgc atgtgtgcgt gtagctgtgt cttatgtatt
     1021 tatacgtatg tcgctcttca aaagcaacct agtttatggg gcagctggac tttgcatgtt
     1081 agagtgagcc ccaagcccct tggcccgcca ccctgttgtt tgaagggccc tgcctcactc
     1141 cacctcctta tctgccagca ttgctgtttc ctgcgaagga ttatgggaaa ctccaggact
     1201 cttctaccca gcccctgcct gcaagggttc cctgcatgcc tgtttcccag agcccagggg
     1261 tacctggtcc ccatttccta cccctctttt aacaaaagag aaaagaattc caaaccaaaa
     1321 aaaaaaaaaa aaaaaaaaaa aaa
//
