LOCUS       NM_001007742            1838 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus UBA domain containing 1 (Ubac1), mRNA.
ACCESSION   NM_001007742 XM_342388
VERSION     NM_001007742.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   2  (bases 1 to 1838)
  AUTHORS   Kamura,T., Hara,T., Matsumoto,M., Ishida,N., Okumura,F.,
            Hatakeyama,S., Yoshida,M., Nakayama,K. and Nakayama,K.I.
  TITLE     Cytoplasmic ubiquitin ligase KPC regulates proteolysis of p27(Kip1)
            at G1 phase
  JOURNAL   Nat Cell Biol 6 (12), 1229-1235 (2004)
   PUBMED   15531880
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083603.1.
            
            On Nov 29, 2004 this sequence version replaced XM_342388.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083603.1, FQ210767.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p13"
     gene            1..1838
                     /gene="Ubac1"
                     /gene_synonym="Ubadc1"
                     /note="UBA domain containing 1"
                     /db_xref="GeneID:362087"
                     /db_xref="RGD:1359542"
     exon            1..306
                     /gene="Ubac1"
                     /gene_synonym="Ubadc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             169..1398
                     /gene="Ubac1"
                     /gene_synonym="Ubadc1"
                     /note="UBA domain-containing protein 1; E3
                     ubiquitin-protein ligase subunit KPC2; kip1
                     ubiquitination-promoting complex protein 2; ubiquitin
                     associated domain containing 1"
                     /codon_start=1
                     /product="ubiquitin-associated domain-containing protein
                     1"
                     /protein_id="NP_001007743.1"
                     /db_xref="GeneID:362087"
                     /db_xref="RGD:1359542"
                     /translation="MFVQEEKIFAGKVLRLHICAADGSEWLEEATEDTSVEKLKESCL
                     KHGAHGSLEDPKNVTHHKLIHAASERVLSDSKTILEENIQDQDVLLLIKKRAPSPIPK
                     MADVSAEEKKKQEQKAPDKDAILRATANLPACSTDRTAVQTTMRDFQTELRKILVSLI
                     EVAQKLLALNPDAVELFKKANAMLDEDEDERVDETALRQLTEMGFPESRASKALRLNH
                     MSVPQAMEWLIEHSEDPAIDTPLPGHAAQAEASAAAATSSSSSEAAVGTSVEDEESRD
                     ELTEIFKKIRRKKEFRADARAVISLMEMGFDEKEVIDALRVNNNQQNAACEWLLGDRK
                     PSPEELDQGIDPNSPLFQAILDNPVVQLGLTNPKTLLAFEDMLENPLNSTQWMNDPET
                     GPVMLQISRIFQTLNRT"
     exon            307..427
                     /gene="Ubac1"
                     /gene_synonym="Ubadc1"
                     /inference="alignment:Splign:2.1.0"
     exon            428..501
                     /gene="Ubac1"
                     /gene_synonym="Ubadc1"
                     /inference="alignment:Splign:2.1.0"
     exon            502..609
                     /gene="Ubac1"
                     /gene_synonym="Ubadc1"
                     /inference="alignment:Splign:2.1.0"
     exon            610..712
                     /gene="Ubac1"
                     /gene_synonym="Ubadc1"
                     /inference="alignment:Splign:2.1.0"
     exon            713..821
                     /gene="Ubac1"
                     /gene_synonym="Ubadc1"
                     /inference="alignment:Splign:2.1.0"
     exon            822..1056
                     /gene="Ubac1"
                     /gene_synonym="Ubadc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1057..1143
                     /gene="Ubac1"
                     /gene_synonym="Ubadc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1144..1282
                     /gene="Ubac1"
                     /gene_synonym="Ubadc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1283..1804
                     /gene="Ubac1"
                     /gene_synonym="Ubadc1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagctcctgc cccttcagtg acgggcggcc aagctgacag gagccggggc ggggcggcgg
       61 cggccagcga aggagcgcgc ggcggcccgg ccccgcccct ggtcctcccg ccagccccag
      121 tgaccttcac gggttcgggc ggcgggtgca ggcccgggcg gcggcgcgat gttcgtgcag
      181 gaggagaaga tctttgcggg caaggtgctt cggctgcaca tctgcgcagc cgacggctcc
      241 gagtggctgg aggaggcgac cgaggacaca tcggtggaga agctcaagga gagttgcctc
      301 aaacatggtg ctcatgggag cctagaagac cccaagaatg tgactcacca taagttaata
      361 catgctgctt cagagagggt gctgagtgac agcaaaacga tcttggaaga aaacatccag
      421 gaccaagacg tcttgttatt gataaagaag cgtgctcctt ccccaatccc taagatggct
      481 gatgtctcag cagaagaaaa gaagaaacaa gagcaaaagg ctccagacaa agacgctatt
      541 cttcgagcaa cggccaacct gcctgcctgt agcacggacc ggactgctgt ccagaccacc
      601 atgagagatt tccagacaga actccggaag atccttgtgt ctctcattga ggtggcacag
      661 aagctgttag cactgaatcc tgatgcagtt gaattgttta agaaggcaaa tgctatgttg
      721 gatgaagacg aggatgagcg agtggatgag accgccttgc ggcagctcac agagatgggc
      781 tttcctgaga gcagagcctc aaaggccctt cggctgaacc acatgtcggt gcctcaggcc
      841 atggagtggc tgattgaaca ttcggaagat ccagctattg acacacctct cccaggccat
      901 gccgcccaag cggaggcgag tgctgcagct gccacctcct cctcctcctc tgaagctgcc
      961 gtgggaacta gtgttgaaga tgaggagtcc cgggatgagc tcacagaaat cttcaagaag
     1021 atacgcagga aaaaggaatt ccgagccgat gctcgggctg tcatttcgct gatggagatg
     1081 ggctttgatg agaaggaagt gattgatgcc ctccgagtga acaacaacca gcagaacgca
     1141 gcttgtgaat ggctgctggg ggaccggaag ccatcccctg aggagttgga ccagggcatc
     1201 gatcccaata gccctctctt tcaggccatc ctggacaacc cagtggtgca gctgggtttg
     1261 acaaacccta agacattgct agcatttgaa gacatgctgg agaacccact taacagcacc
     1321 cagtggatga acgacccaga gacgggcccg gtcatgctgc agatctcgag aatcttccag
     1381 acactgaatc gcacgtaggt ggtgcctact gtgctccttg gctgtgcagt ctcagcagtc
     1441 tgtgaggcgg tgggcgcagg gcccagccag gatcttgcct ggatcacagc ttcagtgact
     1501 ctcctttcct gacctaacgg cttgtcatct tctgccacat ggtttgaaag ttgcagtccc
     1561 agcttctgac aggtgtttac agagagtggc tattgcactg ggaaggtggt gtttgctgcc
     1621 ccgtcccctc cagacactct gctgggctcc tgaagtgcta cttgaattga cccttaggtg
     1681 tttgcttgtg tagcccaatg tattttaaag aaggcatgtt ctgatccaaa gtgttatgtc
     1741 aagtgtgcta atttaactag actgactcac agatggcttc tttaataaat aaaccctttt
     1801 cctaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//
