LOCUS       XM_236501               7669 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus U2 snRNP-associated SURP domain
            containing (U2surp), transcript variant X1, mRNA.
ACCESSION   XM_236501
VERSION     XM_236501.9
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_236501.10.
            
            On Jan 21, 2021 this sequence version replaced XM_236501.8.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7669
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7669
                     /gene="U2surp"
                     /note="U2 snRNP-associated SURP domain containing; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 103 ESTs, 4 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 188 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:315903"
                     /db_xref="RGD:1307882"
     CDS             118..3207
                     /gene="U2surp"
                     /codon_start=1
                     /product="U2 snRNP-associated SURP motif-containing
                     protein isoform X1"
                     /protein_id="XP_236501.3"
                     /db_xref="GeneID:315903"
                     /db_xref="RGD:1307882"
                     /translation="MADKTPGGSQKASSKSRSSDVHSSGSSDAHMDASGPSDSDMPSR
                     TRPKSPRKHNYRNESGRESLCDSPHQNLSRPLLENKLKAFSIGKMSTAKRTLSKKEQE
                     ELKKKEDEKAAAEIYEEFLAAFEGSDGNKVKTFVRGGVVNAAKDEHETDEKRGKIYKP
                     SSRFADQKNPPNQSSNERPPSLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEER
                     DERHKTKGRLSRFEPPQSDSDGQRRSMDVPSRRNRSSGVLDDYAPGSHDVGDPSTTNL
                     YLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERA
                     LKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLPFNAQPRERLK
                     NPNAPMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREGPMFEAMIM
                     NREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSFWRPPPL
                     NPYLHGMSEEQETEAFVEEPSKKGALKEEQRDKLEEILRGLTPRKNDIGDAMVFCLNN
                     AEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRKFFETKLC
                     QIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFLGLVNII
                     EEKETEDVPDDLDGAPIEEELDGAPLEDVDGIPIDATPIDDLDGVPIKSLDDDLDGVP
                     LDAAEDSKKNEPIFKVAPSKWEAVDESELEAQAVTTSKWELFDQHEESEEEENQNQEE
                     ESEDEEDTQSSKSEEHHLYSNPVREEMTESKFSKYSEMSEEKRAKLREIELKVMKFQD
                     ELESGKRPKKPGQSFQEQVEHYRDKLLQREKEKELERERERDKKDKEKLESRSKDKKE
                     KDECTPTRKERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSERSHKESSRSRSSHK
                     DSPRDASKKAKRSPSGSRTPKRSRRSRSRSPKKSGKKSRSQSRSPHRSHKKSKKNKH"
ORIGIN      
        1 tttcggcatt cggctactgg gcctggcagg cttctggcgc gctccgctga tatctgttct
       61 ttcggtgctc gactcacccg cgctgctgcc tccgctgaag gaggagcaaa gctcaagatg
      121 gccgacaaaa cgccaggcgg atctcagaag gccagttcaa agagccgatc atcggatgtt
      181 cattcatctg gatcttcaga tgctcatatg gacgcatctg gaccctcaga tagcgatatg
      241 ccaagtcgaa cacgacctaa aagcccaaga aaacacaatt ataggaatga aagtggccgt
      301 gaaagccttt gcgattctcc tcatcagaat ctctcaagac ctcttctaga aaacaagctt
      361 aaagcattca gtattggaaa aatgagcaca gcaaagcgaa ctctaagtaa gaaggaacaa
      421 gaggaactga agaaaaagga ggatgaaaag gcagctgctg aaatttatga ggaatttctt
      481 gctgcttttg aaggaagtga tggtaataag gtgaaaacgt ttgttcgagg cggggttgtt
      541 aatgcagcta aagatgaaca tgaaacagat gaaaaaagag gtaaaatcta taagccatct
      601 tcaaggtttg cagatcaaaa gaatcctcca aatcagtcat ccaatgaaag gccaccatct
      661 cttcttgtga tagagacgaa aaagcctcca ctgaagaaag gggagaagga aaagaaaaaa
      721 agcaatttgg aacttttcaa agaagaacta aaacaaattc aggaagaacg tgatgagaga
      781 cataaaacaa aaggcaggtt aagtcggttt gagcctcctc agtcagactc tgatggtcag
      841 cgacgttcca tggatgtgcc ttcaagaaga aatagatcgt ctggtgttct tgatgattat
      901 gcaccgggct cacatgatgt aggagatccc agcactacaa acttatacct cggaaacatt
      961 aatccacaga tgaatgaaga aatgctgtgc caagaatttg gaagatttgg accattagct
     1021 agtgtaaaaa ttatgtggcc tagaactgat gaagaaagag cacgagaaag aaattgtggc
     1081 tttgtggctt ttatgaatag aagagatgct gagagagctc taaaaaattt aaatggaaaa
     1141 atgattatgt cttttgaaat gaagttaggt tggggtaaag ctgtacctat tcctccacac
     1201 ccaatataca ttccgccttc tatgatggaa cacacacttc ccccacctcc atccggactg
     1261 ccttttaatg cgcagcctag agagcgatta aaaaacccca atgctcccat gttaccacca
     1321 cctaaaaaca aggaggattt tgagaagact ctgtcgcaag ccatagtcaa agtggttatc
     1381 ccaacagaaa ggaatttact cgccctgata caccgaatga tagaatttgt tgtacgtgaa
     1441 gggccaatgt ttgaagctat gattatgaac agagaaatca acaatcctat gttcaggttc
     1501 ttatttgaaa accagacacc agcccacgtt tactacaggt ggaagcttta ttctattctg
     1561 cagggagatt ctccgacaaa atggcggaca gaagattttc ggatgttcaa aaatggatcc
     1621 ttttggaggc caccaccatt aaatccatac cttcatggga tgtcagagga gcaggagaca
     1681 gaagcgtttg tagaagagcc tagtaaaaag ggagcactca aggaagaaca gcgggataaa
     1741 ttagaagaaa tcttgcgagg attaactcca aggaaaaatg atattggaga tgccatggtt
     1801 ttctgtctta ataatgctga agctgctgaa gaaatagtgg actgcattac tgagtcactg
     1861 tctatcttaa agaccccgct tcccaagaag attgccagat tatatttggt ttctgatgtt
     1921 ttatataact cttcagccaa agttgccaat gcttcatatt ataggaaatt ttttgaaaca
     1981 aagctatgtc agatattttc agacctcaat gctacttatc gtacaattca aggccattta
     2041 caatctgaaa attttaagca acgggtaatg acctgcttca gagcatggga agattgggca
     2101 atttatccag aaccattttt gatcaaactt cagaatattt tcttaggact tgtaaatatc
     2161 attgaagaaa aggaaacaga ggatgtgcca gatgatcttg acggtgctcc cattgaggaa
     2221 gagcttgatg gtgctcctct ggaagatgtg gatggaattc ccattgatgc tactcccatc
     2281 gatgatcttg atggcgtccc tataaaaagt ctcgatgatg atctggatgg agtgcctttg
     2341 gatgcagctg aagactcaaa gaagaatgaa cccatattta aagttgcccc atcaaagtgg
     2401 gaggctgtag atgaatctga gttggaagca caagcggtga caacttccaa gtgggagtta
     2461 tttgaccagc atgaagaatc agaagaagaa gaaaaccaaa atcaggaaga agagagtgaa
     2521 gatgaagaag acacccagag ttccaagtcg gaagagcatc atttatattc taacccagtc
     2581 agagaagaga tgactgagtc taagttctct aagtactccg aaatgagtga ggagaaacga
     2641 gctaagctcc gtgaaattga gctaaaagtt atgaagtttc aagatgaatt ggaatctgga
     2701 aagagaccaa aaaaacccgg ccaaagcttc caggagcaag tagaacacta cagagataaa
     2761 ctgctgcagc gagagaagga gaaagaatta gaaagagaac gagaaagaga caaaaaagat
     2821 aaagaaaaat tggaatctcg atccaaagac aagaaggaaa aggatgaatg tactccaacg
     2881 agaaaagaga ggaagagacg acatagcacc tcccccagcc catctcgaag tagcagtggt
     2941 cgacgagtga aatccccatc acccaaatca gagcggtccg aacggtcaga aaggtctcat
     3001 aaagaaagct ctcggtccag gtcctctcac aaagactccc ctagagatgc tagcaaaaaa
     3061 gccaaaaggt caccgtctgg ttcaaggaca cctaaaaggt ctaggcggtc ccggtctagg
     3121 tccccgaaga agtcagggaa gaaatccaga tctcagtccc ggtctccaca caggtctcat
     3181 aaaaagtcaa agaaaaacaa acactgacat atatttttaa gatgctgtca cttattggaa
     3241 atgcaagttt gttttgtgcc tgaatggttt ttttttttgt tttgtttttt taataaaaaa
     3301 aaaaaaccat acacacaaaa acaagaaaaa ttctaatgaa agagcattcc tgggtttgtt
     3361 tgtttgtttg tttgtgaatg catgtgtaaa ctcatgagta actgcacctg tagacctgtc
     3421 attgttttat attgtataaa ttacttttgt tgtggctgtt ttctcaagat gaaattttta
     3481 ttgtgctaat gaatttcatc agaaatgtgt acaacggatc tgctggcagt agtagtattt
     3541 tgttttagga tgttgtgact tagacacata atacagatgt cttccccccc ttttgtagct
     3601 ttgacaattt gaattagatt tcaaataaaa tctgaacaga aaactataat gttgtttttt
     3661 tgcccagttg gtgacaccaa gtcccttaaa gacctactaa gtgaatttgg caccattgct
     3721 gtttcttatc cctagtgcac tttacaaact ccagtgttca agtagctagt gttttatagt
     3781 tactaaagtg acttccaaaa gttaagggac ccagcactcc tgtttggtag gttttgctta
     3841 tccatttctg gaaaaagggt ttcaaaccca gagatgagag ggctcgagtg agagggtacg
     3901 gtgtgcatct gttactgtag tgcctggttc aaacgccctt tctcaaagaa gcaatgtgac
     3961 ttcaaaacac tcagcccatc ttcagagcaa ttaatgtatt tagggttaat ttaattttta
     4021 tcttctatca tgaaacaagt ttatttataa aaggttttat aaaaacagtt taccatagaa
     4081 ttcttttgta taatagttgc ttttttataa ttgtctgtag gttatcttta aaacactggt
     4141 atcatgatat ttgtacaaat ttgtttgaaa cagctttttg atttgaagga tttggtttgg
     4201 agtacagctt taaataaaaa ttgaaaaaat taaatggttt tcaggtaatt ttaacactca
     4261 atgatttata aatttaagta aaaagttgac ttaagtcaga gttgaattct aacaggaaga
     4321 acttggcagt ggcctgggga agcaatagga aaccttgtga atgtcgatcc cagccccgca
     4381 gagagtatag tgtaaaggag gtgtggactt gagccggcct cagggtctgt cagttttgct
     4441 ttcaggtttg catctaggta ctatgtgcag tgttttgtgt ttttttcggt aataatggat
     4501 tgttcggatt taacttattc ttttaaaatc gtttcacctt gtttacttaa tcttgcccaa
     4561 tcacaaaata aggcgtcttc tccccgtgat ttggggagta gtcatatcag ctgtacatag
     4621 agtaaggcat gtcttttcct tctccaacac atctacagca gctttcgaga tgagccagtc
     4681 acactgcttt acatcgtggt tcttagcatg aaaatattca gtcctttgtt tacctcctct
     4741 attaggaaat gctaattcct taaagttgct cagaataatt aatgtgaaca tttggtgctg
     4801 atccttaaag atctatataa atacagccat tacaagcaga acacattttc ctcctgtgtt
     4861 cattgtctgg gagaatggca ttttatatct ttcttttaag aaaaatagtg tccaattgcc
     4921 gttagttgtg gtttcctcat tccctgagtt tttaggtaga caaagaaata attggtcaga
     4981 aagtggtttt ctttttttca ggcaagttac gaagggtagt tacttttctc tcttgattac
     5041 aacattttag cttggttttg ggtgtttatt tgtagtgttt tctacttcat tagatccatg
     5101 ttgtagctat tatagttaat tttggaatgg ataaaaccgg ctttcttttg ggtaggcaga
     5161 cagttacttg acctgataga atgaattttg gagttcttta atgtatatat taggttgcgt
     5221 tggattttgt tttcttgaat tgtaaatagc attaactaga ttatttccca tttttcttta
     5281 tgaggaacca tctagaataa gctgttaaaa ttcacagtgg attcatacac ttgttatccc
     5341 agcattgagg ctacgtgact atatgctcag gagttgagac caccttgggc agcagagaga
     5401 tcctgtctca taaacaggga tcagaaatgg gtcttacaag aaggaagctg ttctacatat
     5461 ttttaattat agcttagttt tcatatctaa agaacactta gcataatttc tgtgagttaa
     5521 atattcataa atgatctgag agttatagga aagatggtaa ccgctatgta ccgcacagct
     5581 gttggcctct actaaccacg tgtgtgagga gatgctctgt tcatcacagc gttcctcaca
     5641 cagggattcc ctaccacccg atgccattgc acttctctct acatggggta gaagtgacat
     5701 gttggctgct ttcttaccaa agagagagac ctgagactaa caaggattgt gagggtagtt
     5761 tttgtatttt cgttttcctg ggagtcagca tgtgggggat tctcactgtg gtgagctaga
     5821 ggttaaggga ctagtgaggc acaaagccat gatcccaaag gatcctttta tttggttcac
     5881 agtatttttg gctttttttt ttgctaaatt ttgcagaaat ttctttctct atgctgacct
     5941 aattttcttc attgagacca ttcctatgag aactgtattc tagttaaaga gtgttgggag
     6001 aaatacttgc ttctgacctc tgtgtttttc ccattcttta atattcttga gtgcttgaaa
     6061 aataccttaa aagaaattct gttcatgatc aaatataggt ttattagaaa taccctatac
     6121 acttttgcct tgacggtggt ataagttctg agaagttgca tgatcatgaa aatagttgat
     6181 tatggttaaa aataaataga taaacctgtt gccagaatga gttaacctat tatgaccaca
     6241 gctgtgtgat ttctttagca gagaaagtcg tcttcaaaaa tcaactaccg cttttctaac
     6301 actgcatttt caaaataagc tagtgtttgt tgttttctct tctgacttgt agtgggcaag
     6361 cctacaaaga cttgaatgca ggtattcgtg aagacagaat aagtttaaag ggtcttgtga
     6421 tgaaaagctc acatttaaca aaatgtttag ggttttcaca ctttcacgtg catgttttgg
     6481 aatagatttt agggagtgtt tatcatcatt ttggactttt tcctgttttt gttaccaact
     6541 tcctaagatt tagctaatag aagaagacaa atcccaggga agtgtagtgg tagagtaagg
     6601 ggtgggaatg tgctgctgtt caaagtgagc cttgttccat tgttcaaatg tcgatgcctc
     6661 ctgtatccag taccacctcc tgcagttcta atgtaaatgg tatgtgtata tgtatagttt
     6721 tgtagagaaa acgtcctcgt tcactttcat atgtaattgt gcttagagta tcagcggttt
     6781 ttatcctttt tacttcaggc tcttgtatgt tgagtctctg aaatagcaga gaagacagat
     6841 ttgtagaatg gctcagccga agtgccctgc agtgggacag atgccatgga aggctagtgg
     6901 gctgccttct ggatgagact ggcaccgtat cgttctctac ggaaagatca gttgcaagca
     6961 aagtgtgtag aattcacttg tttttctttt aacttttaat tacttaaata aaatccattg
     7021 tttcatagta aatgtagact gcgtatggaa ttttctgtgt agttttctaa cgggaattct
     7081 atgtggccat ctagctttca gcagtttcct cccatgcaga ctggtgatgg gaggagcttt
     7141 gtctgttcgc tgtagcaaca gagccactat gttttacgca cttaaactct caccagatag
     7201 tttcatgata ggtgattccc tactaattag gaaatttcac acccttattt tctttgttaa
     7261 ggaagtctgt tctgtttatg tcaccgagga aaacaacaat ggctatctca ccaccaacct
     7321 ataaatatca gctcgttatt atacctgttt tgtttttaaa cataacatgg cgtcatcaca
     7381 ctaaaacctc cgggttcctt tttaaggttt tgtttatttt tagttgtgat aaaatgctct
     7441 tgacaggatt taccatctga agcatttttg actgtaccat ttgctggtgt taggtgtgct
     7501 cacattgttg tgtgaccaac ctctataacg ctttcattgc aaaactgaca ctgtacctga
     7561 gtcccctctc ctctgcctgc cctgtagcca cggtctactt tgttgctgtt tggctaatct
     7621 agaaagtgaa atataaacat catttaatta aaattcttta ccgtttgta
//
