LOCUS       XM_003748763            3241 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus U2 small nuclear RNA auxiliary factor
            2 (U2af2), transcript variant X1, mRNA.
ACCESSION   XM_003748763
VERSION     XM_003748763.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 11, 2024 this sequence was replaced by
            NM_001427198.1.
            
            On Jan 21, 2021 this sequence version replaced XM_003748763.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3241
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3241
                     /gene="U2af2"
                     /note="U2 small nuclear RNA auxiliary factor 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 22 ESTs, 3 long SRA reads, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 246 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:308335"
                     /db_xref="RGD:1310690"
     CDS             1193..2620
                     /gene="U2af2"
                     /codon_start=1
                     /product="splicing factor U2AF 65 kDa subunit isoform X1"
                     /protein_id="XP_003748811.1"
                     /db_xref="GeneID:308335"
                     /db_xref="RGD:1310690"
                     /translation="MSDFDEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSR
                     DRRNRDQRSASRDRRRRSKPLTRGAKEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHI
                     TPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGI
                     TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGII
                     FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVK
                     ELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR
                     ASVGAKNATLVSLPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDD
                     EEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT
                     GRKFANRVVVTKYCDPDSYHRRDFW"
ORIGIN      
        1 acgttctgcg gttgcgcagc aggagcaggg gcggacgatt taacgcgatt gccatggcaa
       61 ccgggagagg gcaggctggt taaaccgtct tgaagttagt gtctacgggg ctaaggttgg
      121 gggtgggggt agaggtatgt tggaggagat cgtgcgcacg cgcaatgtgg atttagaatg
      181 gcggatcctc ccgagagcgg agaaaaacgt gcctctgacc gctacgcagg cgcagaaacc
      241 cctctcaaat cactgtgcgc aggagtccca agctgcgcta acaacctccg ccgcgtcctc
      301 gaacaccctt tgttcaactg gctgctattg tcccgtacac cttctctggc cttccgcgag
      361 gtcagttttt tcagttttct agagagctaa gtgccaaagc tgagactccg ccccgtccac
      421 tatagccatc tggcccacct ctcatctgtc ctccctccct tttcggttct ttaagccgaa
      481 aggagccgaa acaacagcgg aaaaagccga atttcccccc ctccgtgctg gaggccttcc
      541 tgaagcagtg gcggaaggga acgatattct ccggaagggg cggagtgacc ctgtcgaacc
      601 tccggaaaga gccgaagatt acaatcgggt ttaatctcta gaggggcggt gagcgagcgc
      661 tggaaacctt cggaagagcc gaaggcctgg acggttagga ttgttggaag tgactgaccg
      721 cttgaacagg gtcggcgagg ggtgggacta atttccagag gcggccagag actgagacgg
      781 tttgagttgt aggaaaaccc gtatctttag aggaggctgg tgtaggggaa cgcgaggacc
      841 cacggaatcc tccgaacgtt gaaacgctag tctccgaaaa gttaccgcaa cttgggcagc
      901 cggcaaaaat cctcgcttcg ggtgatttcg agggcgaccg tcgtctgcag acttctctct
      961 ccgagaatag ccgacaggct tcggatctga gctcggggaa gttcgagggg gggtggggcg
     1021 ggcgggacga gggggtggag tcgggacggg gcggggcttg gggcttgctt aggtaggcga
     1081 cggagtgccg gcgggggccg gaagtagccg aagccagcgg cggaagtagc cggagcgggc
     1141 gggcggcaag gcgaggcgag agctgcacag ggccctacgc ggccgcctaa gcatgtcgga
     1201 cttcgacgag ttcgagcggc agctcaacga gaataaacaa gaacgggaca aggaaaaccg
     1261 gcaccggaag cgtagtcata gtcgctctcg aagccgggac cgaaagcgca ggagccggag
     1321 ccgagatcgg cgtaaccggg accagcgcag tgcctcccgg gacaggagac gacgaagcaa
     1381 acctttgacc agaggcgcta aagaggagca cggtggattg attcgttccc cccgccatga
     1441 gaagaagaag aaggttcgta aatactggga cgtgccaccg cctggctttg agcacatcac
     1501 cccaatgcag tacaaggcca tgcaagctgc gggtcagatt ccagccactg cccttctccc
     1561 gactatgact cctgatggtc tggctgtgac cccaacgcca gtgcctgtgg ttgggagcca
     1621 gatgaccaga caggccagac gtctctacgt gggcaacatc ccttttggca tcactgagga
     1681 ggctatgatg gacttcttca acgcccagat gcgcttgggg gggttgactc aggcccctgg
     1741 caacccagtc ttggctgttc agataaatca agacaagaat tttgcctttt tggagttccg
     1801 gtcagtggat gagacgaccc aggccatggc ctttgatggc atcatcttcc agggccagtc
     1861 attgaagatt cgaaggcctc atgactacca gccactgcct ggcatgtcag agaacccctc
     1921 tgtttatgtg cctggagttg tatccactgt agtcccagat tctgcccata agctgttcat
     1981 cgggggcttg cccaactacc tgaatgatga ccaggtaaaa gaactgctga catcctttgg
     2041 gcctctaaag gccttcaact tggtcaagga tagtgccaca gggctctcca agggctatgc
     2101 cttctgtgag tacgtggaca tcaacgttac agatcaggct attgcggggc tgaatgggat
     2161 gcagctaggg gacaagaagc tgcttgtcca gagggcgagt gtgggagcca agaatgccac
     2221 gctggtgagc ctcccgagca ccatcaatca gacacctgtg acccttcaag tgcccggcct
     2281 gatgagctct caggtgcaga tgggcggtca cccaactgag gtcctgtgcc tcatgaacat
     2341 ggtgctccct gaggagctgc tggacgatga ggaatatgag gaaattgtag aggatgtacg
     2401 agacgagtgc agcaagtatg ggctggtcaa atccattgaa attcctcggc ccgtggatgg
     2461 cgtcgaggtg cctggctgcg gaaagatctt tgtggagttc acctctgtgt ttgactgcca
     2521 gaaagccatg cagggtctaa ccggccgcaa gttcgccaac agagtggtgg tcacaaaata
     2581 ctgtgaccct gactcgtacc accgtcggga cttctggtag aggtggctgg gggagggtgg
     2641 gggcagggct ggctggggac tttccccccc acctgtcccc tcctcctttc ccccctctga
     2701 agatgatggg cagaggagtg acagccgaat gacagccggc agcaactgga atggcagcaa
     2761 ttaagggggg tgggggggtg ggggggctag ggcaggaagg ggactgggca agtgcacaca
     2821 ggcccacaga cacatgcacc cacacagaca cagagggaac gggctgggat ggggactgtg
     2881 tgcacagcag ggcgggtagg accccccaca gccccttccc aaacagcctc ttaaccctta
     2941 cacccctttc ctcctctctt accccatggt aggaacatag cgtgtttata ttttatggcc
     3001 aaactatttt gaattttgtt gtctggccct cagtgccctg ccttctccct ttgcaggacc
     3061 acagctcccg tcctctggct ttggtcctcc ctgttctcca ccctggtttc ttaagtagtt
     3121 ggttcttctt agtcttcctg accctcaacc cgtggtctca gtcctgctcc tcctctctgt
     3181 ggcagtttca tatttgctaa tacgaatttg ctcattaaac attttgttgt attttacttt
     3241 a
//
