LOCUS       NM_001008775             887 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus U2 small nuclear RNA auxiliary factor 1-like 4
            (U2af1l4), mRNA.
ACCESSION   NM_001008775 XM_006228776 XM_341828
VERSION     NM_001008775.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 887)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Mar 9, 2021 this sequence version replaced
            XM_006228776.4, NM_001008775.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643290.1622.1, FM078827.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-78                JAXUCZ010000001.1  94943761-94943838
            79-166              JAXUCZ010000001.1  94943971-94944058
            167-233             JAXUCZ010000001.1  94944361-94944427
            234-283             JAXUCZ010000001.1  94944515-94944564
            284-382             JAXUCZ010000001.1  94944641-94944739
            383-516             JAXUCZ010000001.1  94944912-94945045
            517-612             JAXUCZ010000001.1  94945225-94945320
            613-887             JAXUCZ010000001.1  94945632-94945906
FEATURES             Location/Qualifiers
     source          1..887
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..887
                     /gene="U2af1l4"
                     /note="U2 small nuclear RNA auxiliary factor 1-like 4"
                     /db_xref="GeneID:361542"
                     /db_xref="RGD:1305600"
     exon            1..78
                     /gene="U2af1l4"
                     /inference="alignment:Splign:2.1.0"
     CDS             35..697
                     /gene="U2af1l4"
                     /note="Cb2-807; U2 auxiliary factor 26; liver
                     regeneration-related protein LRRG157/LRRG158; U2 small
                     nuclear RNA auxiliary factor 1-like protein 4; U2AF1-like
                     4"
                     /codon_start=1
                     /product="splicing factor U2AF 26 kDa subunit"
                     /protein_id="NP_001008775.1"
                     /db_xref="GeneID:361542"
                     /db_xref="RGD:1305600"
                     /translation="MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQ
                     TIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVC
                     DNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEM
                     GECTRGGFCNFMHLRPISRNLRRQLYGRGPRHRSPPRSHTGHRPRERNRRRSPDHRHG
                     RF"
     exon            79..166
                     /gene="U2af1l4"
                     /inference="alignment:Splign:2.1.0"
     exon            167..233
                     /gene="U2af1l4"
                     /inference="alignment:Splign:2.1.0"
     exon            234..283
                     /gene="U2af1l4"
                     /inference="alignment:Splign:2.1.0"
     exon            284..382
                     /gene="U2af1l4"
                     /inference="alignment:Splign:2.1.0"
     exon            383..516
                     /gene="U2af1l4"
                     /inference="alignment:Splign:2.1.0"
     exon            517..612
                     /gene="U2af1l4"
                     /inference="alignment:Splign:2.1.0"
     exon            613..887
                     /gene="U2af1l4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaggagcagg cgcgttggag tgttcgggta aaaaatggct gaatatttag cttcgatatt
       61 cgggactgag aaggacaagg ttaactgctc tttttacttt aagattgggg cctgccggca
      121 cggggaccgg tgctcccgac ttcacaacaa accgactttc agccagacca tagtcctgct
      181 caacttgtac cggaacccac agaacacagc ccaaactgca gatggatcac actgtcacgt
      241 gagcgatgtg gaggtgcaag aacactatga taacttcttt gaggaggtat tcacagaact
      301 gcaggagaag tatggagaaa ttgaagagat gaatgtgtgt gataacctcg gggaccacct
      361 cgtgggcaat gtctatgtta agttccggcg ggaggaggat gcagagcggg ctgtggcgga
      421 actcaataac cgctggttca acgggcaggc tgtgcatgct gagctgtctc cggtcactga
      481 cttccgagag tcatgctgcc gacagtatga gatgggggaa tgtacccgag gtggcttctg
      541 caactttatg cacctgcgac ccatatccag gaacttgcgc cggcagctct atgggcgagg
      601 acccaggcat aggtcacctc caaggtccca tacaggtcac cgaccccgag aaaggaaccg
      661 acgccgttcc ccagaccacc ggcatggtcg cttctgagac tggtgccctt gctcttcacc
      721 caagggcata gatgttcctg tctagcatcc cttctcaaag cgctctacac gttccagtcc
      781 catcaccccc aggcttcaga gcttcataac acaatgttcg atacaggaac ctcctcctcc
      841 tccttttgtc cctcctccaa taaagcttaa gaagtttgtc aaccaaa
//
