LOCUS       NM_001399415            1061 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus tRNA-yW synthesizing protein 3 homolog (Tyw3),
            transcript variant 1, mRNA.
ACCESSION   NM_001399415 XM_575065
VERSION     NM_001399415.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1061)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Jan 7, 2022 this sequence version replaced XM_575065.6.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.797291.1,
                                           SRR26643287.7128.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840109,
                                           SAMN12840116 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-211               JAXUCZ010000002.1  246211459-246211669 c
            212-292             JAXUCZ010000002.1  246208916-246208996 c
            293-391             JAXUCZ010000002.1  246207987-246208085 c
            392-463             JAXUCZ010000002.1  246203886-246203957 c
            464-597             JAXUCZ010000002.1  246201399-246201532 c
            598-1061            JAXUCZ010000002.1  246189627-246190090 c
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q45"
     gene            1..1061
                     /gene="Tyw3"
                     /gene_synonym="RGD1559623"
                     /note="tRNA-yW synthesizing protein 3 homolog"
                     /db_xref="GeneID:499731"
                     /db_xref="RGD:1559623"
     exon            1..211
                     /gene="Tyw3"
                     /gene_synonym="RGD1559623"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..814
                     /gene="Tyw3"
                     /gene_synonym="RGD1559623"
                     /EC_number="2.1.1.282"
                     /note="isoform 1 is encoded by transcript variant 1; tRNA
                     wybutosine-synthesizing protein 3 homolog"
                     /codon_start=1
                     /product="tRNA wybutosine-synthesizing protein 3 homolog
                     isoform 1"
                     /protein_id="NP_001386344.1"
                     /db_xref="GeneID:499731"
                     /db_xref="RGD:1559623"
                     /translation="MDRSAEFGRWKAQSLSKADLSRKGSVDEDAVEVVELLNSREEFF
                     TTSSCAGRILLLDGSTNGPRVQKQHCCWLLVTHKPCVKDDVMAALKGATSDAVLKFEP
                     FILHVQCRTLQDAQTLHSVAIDSGFRNSGITVGKRGKIMLAVRSTHGLEVPLTHKGKL
                     LVTEEYIEFLLTTANQKMEENKRRIGRFYNCLQHAVKRETISNSRSEIKEKNNPLCTP
                     KNQRKQGKACDPSTTEDDGGEQLEGSDGWGIGAVLFLGDD"
     exon            212..292
                     /gene="Tyw3"
                     /gene_synonym="RGD1559623"
                     /inference="alignment:Splign:2.1.0"
     exon            293..391
                     /gene="Tyw3"
                     /gene_synonym="RGD1559623"
                     /inference="alignment:Splign:2.1.0"
     exon            392..463
                     /gene="Tyw3"
                     /gene_synonym="RGD1559623"
                     /inference="alignment:Splign:2.1.0"
     exon            464..597
                     /gene="Tyw3"
                     /gene_synonym="RGD1559623"
                     /inference="alignment:Splign:2.1.0"
     exon            598..1061
                     /gene="Tyw3"
                     /gene_synonym="RGD1559623"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attccaaagc agagagccaa ttccagatcg ctcgctcatg gaccgcagcg cagagttcgg
       61 ccgatggaag gcgcagagtc tgagcaaggc agaccttagc cggaagggca gtgtggacga
      121 ggacgcggtg gaggtggtgg agctcctgaa ttcgcgggaa gagtttttca ctaccagctc
      181 ctgcgcaggc cgcatcctcc ttctagacgg gagcacgaat ggtcccagag ttcagaaaca
      241 gcactgctgc tggctgctgg tcacacacaa gccttgtgtg aaagatgacg tgatggcagc
      301 tctgaagggt gcaaccagcg atgctgtgtt gaagtttgaa ccatttatcc tccatgtgca
      361 gtgccggaca ctgcaggacg cacaaaccct gcattcagtg gccattgatt ctggcttcag
      421 gaactcaggc atcaccgtgg ggaagcgagg gaagatcatg ctggctgtcc ggagtacaca
      481 tggattggaa gtcccattaa cccacaaggg gaaactgttg gtgacagagg aatatattga
      541 gttcctctta actacagcaa atcagaaaat ggaggaaaac aagagaagaa ttggaaggtt
      601 ctataactgc ctacaacatg ctgtcaaaag agaaacaatt tcaaactcac gctccgagat
      661 caaagaaaaa aataacccac tctgtactcc taagaatcag aggaagcaag gaaaagcatg
      721 tgacccatct acgactgaag atgatggcgg ggagcagctc gaaggcagcg atggctgggg
      781 aatcggtgct gtcctcttcc tgggcgatga ctaagacttg gcgggaatcg actctggttc
      841 acatgctgct cttcacaaga gcgtcaggat tcactgaggg cacccgaccc ctcaggaggc
      901 tggagttaat ctctctattg tagagaaact taagtgtaaa tggcttttca aagtagcttt
      961 gtatatgttt gctctctgaa gtctgctttt taagcatatt aggattcact ctacaaataa
     1021 acctaaaact tcctgtgtct gtttatgtca aataggaaaa a
//
