LOCUS       XM_039079313            1882 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus thymidine phosphorylase (Tymp),
            transcript variant X9, mRNA.
ACCESSION   XM_039079313
VERSION     XM_039079313.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039079313.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1882
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1882
                     /gene="Tymp"
                     /gene_synonym="Ecgf1; TP"
                     /note="thymidine phosphorylase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 8
                     ESTs, 3 long SRA reads, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:315219"
                     /db_xref="RGD:1305756"
     CDS             277..1716
                     /gene="Tymp"
                     /gene_synonym="Ecgf1; TP"
                     /codon_start=1
                     /product="thymidine phosphorylase isoform X7"
                     /protein_id="XP_038935241.1"
                     /db_xref="GeneID:315219"
                     /db_xref="RGD:1305756"
                     /translation="MAAPGTPPPLAPETAGADSGGGSGEHRQLPELIRLKRNGGHLSE
                     ADIRNFVHALMDGRAQDTQIGAMLMAIRLQGMDLEETSVLTQALAESGQQLEWPKAWH
                     QQLVDKHSTGGVGDKVSLVLAPALAACGCKVPMISGRSLGHTGGTLDKLESIPGFSVT
                     QSPEQVQMLQILEEVGCCIVGQSEKLVPADGILYAARDVTATVDSVPLITASILSKKA
                     VEGLSTLVVDVKFGGAAVFPDQEKARELAKMLVRVGMGLGLQVAAALTAMDNPLGRNV
                     GHTLEVEEALLCLDGAGPPDLRDLVIRLAGGAILWLSGQAETQDQGAARVAAALDDGS
                     ALHRFQLMLSAQGVDPGLARALCSGSPTQRRQLLPHARKQEELLSPADGIVECVRALP
                     LACVLHELGAGRSRAGQPIRPGVGAELLVDVGQWLSRGTPWLRVHLDGPALSSQQRRT
                     LLGALVLSDRAPFKAPSPFAELVLPPTTP"
ORIGIN      
        1 gatactcata gggaactggg cagagcgaac tctggtctag accgctgtaa cccgaccctt
       61 aaggtcctgg caacgtcaat tcgccacaag agagcaggta gggagcagct taaatggtga
      121 ttggccttac cttgacaagt gccgcctact gggacagccc tatttgtccg ctgtccctaa
      181 cggtagtccc agtctgaact gtctgcacct aactccacgc cgggctgagg gctaccaggc
      241 cggaacggag ccagatccag aaaactggct gcagcaatgg cagctccagg gacaccacct
      301 cccttggccc cagagacagc tggtgccgac tcggggggag ggagtgggga gcacaggcag
      361 ctgccagagc tgatccgcct caagcgaaat ggagggcatc tgagcgaagc agatatcaga
      421 aacttcgtgc acgcgttgat ggacggaaga gcacaggaca cacaaatcgg ggccatgctg
      481 atggccattc ggctgcaagg catggaccta gaggagacat ctgtgttgac tcaggccctc
      541 gcagagtctg ggcagcaact ggagtggccc aaggcctggc accagcagct tgtggacaaa
      601 cactccacag gaggtgtggg cgataaggtt agcctggttc tggcacctgc cctggctgca
      661 tgtggctgca aggtaccaat gatcagcgga cgcagtttgg gacacacagg gggcacgctg
      721 gataaactgg aatctattcc tgggttcagc gtcacccaga gcccagaaca ggtacagatg
      781 ctgcagatac ttgaggaagt cggctgctgc attgttggcc agagtgaaaa gctagttcct
      841 gctgatggaa tcctgtatgc tgcacgagat gtgacagcta ctgtggacag tgtaccgctc
      901 attacagcgt caatcctcag taagaaagcc gtggagggac tgtccactct ggtggtagat
      961 gttaagtttg ggggggctgc agtcttccca gaccaggaga aggcccgaga actggcaaag
     1021 atgttggtta gagtgggaat gggtctgggg ctgcaggttg ctgcagccct gaccgccatg
     1081 gacaaccctc tgggccgcaa cgtgggtcat accctggaag tggaagaagc gttgctttgc
     1141 ctggatggtg cggggccgcc ggatctgcgg gacctggtca ttaggctagc aggaggcgcc
     1201 attctttggc ttagcggaca ggcagaaacc caagaccagg gtgccgcccg agtggccgcg
     1261 gcgttggatg atggctctgc gctgcaccgc ttccagctga tgctttcggc gcagggcgta
     1321 gaccccggcc tagctagagc attgtgctcc ggaagcccca cgcaacgccg gcagttgctg
     1381 cctcacgccc gaaagcaaga agagctgctc tcaccggcag acggcattgt ggagtgcgtc
     1441 cgagcgctgc cgctggcctg tgtactgcac gagctcggag ccggacgcag ccgagcaggg
     1501 cagccgatca gaccgggagt gggtgccgaa ctactggtcg acgtgggcca atggttgtcc
     1561 cgcgggacac cctggctccg cgtgcacctg gacggccccg cgctcagcag tcagcagcgc
     1621 cgcactcttc tgggggctct cgtgctgtca gatcgagcac ccttcaaggc cccttcaccc
     1681 ttcgctgagc ttgtcctccc accgaccacc ccatagccct aaatctccaa cccatcgctg
     1741 ccagagcttc aggtccatga tgctactggc tctagggccc aaagcttggc ccaagctctc
     1801 tcagttcaaa ccccttctca ggatctcaag gggtgaaact ctgcacataa attcccggca
     1861 ttggtcgggg caaggccaag gc
//
