LOCUS       XM_039079311            1591 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus thymidine phosphorylase (Tymp),
            transcript variant X5, mRNA.
ACCESSION   XM_039079311
VERSION     XM_039079311.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039079311.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1591
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1591
                     /gene="Tymp"
                     /gene_synonym="Ecgf1; TP"
                     /note="thymidine phosphorylase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 19
                     ESTs, 9 long SRA reads, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:315219"
                     /db_xref="RGD:1305756"
     CDS             28..1548
                     /gene="Tymp"
                     /gene_synonym="Ecgf1; TP"
                     /codon_start=1
                     /product="thymidine phosphorylase isoform X5"
                     /protein_id="XP_038935239.1"
                     /db_xref="GeneID:315219"
                     /db_xref="RGD:1305756"
                     /translation="MGLGLQVAAALTAMDNPLGRNVGHTLEVEEALLCLDGAGPPDLR
                     DLVIRLAGGAILWLSGQAETQDQGAARVAAALDDGSALHRFQLMLSAQGVDPGLARAL
                     CSGSPTQRRQLLPHARKQEELLSPADGETGYLRHQALWSASERCRWPVYCTSSEPDAA
                     EQGSRSDREWVPNYWSTWANGCPAGHPGSACTWTAPRSAVSSAALFWGLSCCQIEHPS
                     RPLHPSLSLSSHRPPHSPKSPTHRCQSFRSMMLLALGPKAWPKLSQFKPLLRISRGET
                     LHINSRHWSGQGQGQHQGPGLRTRLLITALFGAGLGWAWLAARAEKEQWRQQQRTEAL
                     RQAAVGQGDFSLLDHKGQPRCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVQKLE
                     AEPELPLVQPVFVTVDPERDDVAAMARYVQEFHPRLLGLTGSTEQVAHASRNYRVYYS
                     AGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQIVESVRRHIAAFHSILP"
ORIGIN      
        1 taccgctcat tacaggttag agtgggaatg ggtctggggc tgcaggttgc tgcagccctg
       61 accgccatgg acaaccctct gggccgcaac gtgggtcata ccctggaagt ggaagaagcg
      121 ttgctttgcc tggatggtgc ggggccgccg gatctgcggg acctggtcat taggctagca
      181 ggaggcgcca ttctttggct tagcggacag gcagaaaccc aagaccaggg tgccgcccga
      241 gtggccgcgg cgttggatga tggctctgcg ctgcaccgct tccagctgat gctttcggcg
      301 cagggcgtag accccggcct agctagagca ttgtgctccg gaagccccac gcaacgccgg
      361 cagttgctgc ctcacgcccg aaagcaagaa gagctgctct caccggcaga cggtgagacc
      421 ggatatctcc ggcaccaggc attgtggagt gcgtccgagc gctgccgctg gcctgtgtac
      481 tgcacgagct cggagccgga cgcagccgag cagggcagcc gatcagaccg ggagtgggtg
      541 ccgaactact ggtcgacgtg ggccaatggt tgtcccgcgg gacaccctgg ctccgcgtgc
      601 acctggacgg ccccgcgctc agcagtcagc agcgccgcac tcttctgggg gctctcgtgc
      661 tgtcagatcg agcacccttc aaggcccctt cacccttcgc tgagcttgtc ctcccaccga
      721 ccaccccata gccctaaatc tccaacccat cgctgccaga gcttcaggtc catgatgcta
      781 ctggctctag ggcccaaagc ttggcccaag ctctctcagt tcaaacccct tctcaggatc
      841 tcaaggggtg aaactctgca cataaattcc cggcattggt cggggcaagg ccaaggccaa
      901 caccaaggcc ctgggctaag gactagactg ttgatcactg ccctgtttgg ggctgggcta
      961 ggctgggcct ggctggccgc tagagctgag aaggaacagt ggcgccaaca acagcggaca
     1021 gaggccctgc gccaggctgc tgtgggccag ggtgacttca gcctactgga ccacaaaggc
     1081 cagcctcgat gcaaagccga cttccgaggc cagtgggtgc tgatgtactt tggttttact
     1141 cactgccctg atatttgccc cgatgagctg gaaaagctgg tgcaggtagt gcagaagctc
     1201 gaggcagagc ctgagctgcc cctggtgcag cctgtcttcg tcactgtgga cccagaacga
     1261 gatgacgtgg cagccatggc ccgatatgtg caagaattcc acccaaggct gctgggtctg
     1321 actggttcta cagaacaagt ggcccatgct agtcgcaact accgtgtata ctacagcgct
     1381 ggtcccaagg acgaggacca ggactatatt gtggaccatt ccattgccat ctacttgctc
     1441 aacccagatg gtctcttcac tgattactat ggtcgtagca ggtcagcaga gcagattgta
     1501 gagagtgtac gccggcacat agctgccttc catagcatac tgccctgaac tgtgtactgc
     1561 ctaggccctg tcattaaatg gatgtactta a
//
