LOCUS       XM_039093784            3855 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus thioredoxin domain containing 16
            (Txndc16), transcript variant X2, mRNA.
ACCESSION   XM_039093784
VERSION     XM_039093784.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093784.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3855
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3855
                     /gene="Txndc16"
                     /note="thioredoxin domain containing 16; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 13 ESTs, 1 long SRA read, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 138 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:361025"
                     /db_xref="RGD:1306755"
     CDS             322..2886
                     /gene="Txndc16"
                     /codon_start=1
                     /product="thioredoxin domain-containing protein 16 isoform
                     X1"
                     /protein_id="XP_038949712.1"
                     /db_xref="GeneID:361025"
                     /db_xref="RGD:1306755"
                     /translation="MNQSTSGSSITSGVRTQQVKKTDKSPGTRIQPQLTMSSGLRVFR
                     AGVALVLMCNFYTSTEDSLPELSPQQYFSSLQPGKASLAYFCQDGSLSNSLFLEELKE
                     AIRPLQDYGISVAKVTCVKEEASRYCGEEESLMKAYLFRGSILLREFPTDILFDVNAI
                     IAHVLFALLFNEVKYITTLEDLHSIENSLKGKSNMIFSYVEAIGTPEHRAVMEAAFVY
                     GTSYQFALTTEIALLEDVGSENIEHAHLYFFHCKVVSDVTEHCRRTLMGPPLAAVEVH
                     KFVKTMEAPLLTEVAEDPQLVSTIHLQLGLPLVFIISQRATHEADRRTAEWVAWQLLG
                     KAGVLLLMRDSADVNIPQHANVAFRRAEKDAPVEFQVLNDVELIISHVKNNLYFEEIQ
                     EDEGEDMEGPDLAVEDDEVAGTVYRDRKRPLPLGLLVELTEETFNTTVMASDTLVLFY
                     ATWHAVSMAFLQSYTDVAVKLKGRSTILLTRINCADWSDVCTKQNVTAFPMVKLYKEG
                     ESPVSYAGMLGSKDLLTFIQLNKISSPVNIASIQEAEKYLRGELYKDLFSFSSVSVLG
                     LFTPAMTSAKECFQKAGKQLRGSVLTGVYSEDDAWILSNKYATTLPALLLARPKEGRI
                     ESVPLDTTPVQDMVQILANAPLEAFPEITVENLPTYLRFQRPLLILFSDGSINPQYRN
                     IVLALVRQKQLDLFTPCWLNLKNTPVGRGVLKAYFGRLPTLPQLLLVNLHSGGQVYAF
                     PSSQPLTEQSLVLWLKNSQAGLENPITVLSAQEWSPPLPAFDFLSMMDVPTSRAPTKK
                     VLECQKEAEVQERAGQQPGDKSTTRREPVEVLRIKHWNRSNRPKESREPFHHDKEL"
ORIGIN      
        1 gattctgaca cctggagctg ttctcgctcc gccccctggt cttctattgg ttggagtgtc
       61 gcttacgtaa ggagcacgag gagcaggcgg agcccccggg gttgtttttt tcgcccgaga
      121 gactgatttt gcggaggcag tggcggccgt gggcggtgag atctctcagg tagtcgtagt
      181 cgctttgaga gccgccttgg ggaccagccc ctgccccgcc ttctgtcact ggggtagcgg
      241 gaagtgctgg cttcagagac ctttagttgc actgcacgag gatctcagtg agcaggagga
      301 aatgcagggc gagggaagcg aatgaatcaa agcacgagcg gaagcagtat cacttcaggc
      361 gttagaacac agcaagtgaa gaaaacagac aagtctcctg gcacgcgtat ccagccacag
      421 ctcacgatgt cttctggcct cagagtattt agagctggtg ttgcgttggt tttgatgtgc
      481 aatttttaca cgtcaactga agactccctc ccagaactga gtcctcagca gtatttcagc
      541 tcactgcagc caggaaaggc ctcattagct tatttttgcc aagatggttc tctaagtaac
      601 tctctgtttc tcgaagaact gaaagaagcc atcaggcccc tccaggacta tgggatttca
      661 gtcgcaaagg ttacttgtgt caaagaagaa gcgtcaaggt actgtgggga agaagagagt
      721 ttgatgaaag cgtatttatt cagaggcagc atactcctca gagagttccc cacggacatc
      781 ttgtttgacg tgaacgccat cattgcccat gtcctctttg ctctgctttt taatgaagta
      841 aaatatatta ccaccctgga agaccttcat agcatagaaa attctctgaa aggaaaatca
      901 aatatgatat tctcatatgt agaagccatc ggaacaccag agcacagagc cgtcatggaa
      961 gccgcttttg tgtatgggac ctcttaccag tttgccttaa ccacagaaat tgctctttta
     1021 gaagatgtcg gctcggagaa catagagcac gcacatctct acttctttca ttgtaaagtg
     1081 gtctcggacg tgaccgagca ttgccgaaga acactaatgg ggccgccatt ggctgcagtg
     1141 gaagttcaca aattcgtgaa gacaatggag gcacctctgt tgacggaggt ggctgaagac
     1201 ccccagctgg tgtccaccat ccatctacaa ctaggactgc cactggtctt tattatcagc
     1261 cagcgagcga cacacgaggc tgacagaaga accgcagagt gggtggcgtg gcagcttctg
     1321 gggaaagcag gagttctgct cttgatgagg gactccgcgg acgtgaacat tccccagcac
     1381 gctaacgtgg ccttcagaag agcagagaag gacgcgcctg tggaatttca ggtgttgaat
     1441 gatgttgagt taatcatttc ccatgtgaaa aataatttgt actttgaaga aatacaagaa
     1501 gatgaaggtg aagacatgga aggcccagat ctggctgttg aagacgatga ggtggcggga
     1561 actgtttaca gagacaggaa gagaccactg cctttggggt tgttggtaga actaacggag
     1621 gagacattta acacaacggt catggcttcc gacaccttag tgcttttcta tgctacctgg
     1681 catgcagtat ccatggcatt tcttcagtcc tatactgatg tggcagttaa attgaaaggc
     1741 aggtccacca tccttctcac tagaataaat tgtgcggatt ggtccgatgt atgtacgaag
     1801 caaaatgtca ctgcgtttcc catggtaaag ttgtataagg aaggcgagag cccggtgtct
     1861 tacgccggta tgttgggaag taaagatctc ctgacgttta tccagttaaa caagatctcc
     1921 tctccagtga acatagcatc catccaggaa gcagaaaaat acctacgtgg ggaattatat
     1981 aaagacctgt tcagcttctc cagtgtgtca gtactgggac tctttactcc agccatgacg
     2041 tcagcgaaag agtgtttcca gaaagcaggg aagcagctga gaggctctgt cctcacagga
     2101 gtttattctg aagatgacgc ttggatactg tcaaataaat atgctacaac ccttccagcc
     2161 ctgctactgg ccagacccaa agaaggtaga atagagagcg tcccactaga caccaccccg
     2221 gtacaagaca tggttcagat actagcaaat gcaccactgg aagcatttcc agagatcact
     2281 gtggaaaacc ttcccacata tttaagattt cagagaccgt tacttatctt gtttagtgat
     2341 ggcagcataa atcctcagta taggaacatt gtcctggcac tggtgagaca gaagcagttg
     2401 gatttgttta ccccttgctg gttaaatcta aagaacactc cagtggggag gggcgtcttg
     2461 aaggcgtatt ttggtcgtct gccgactctt cctcagctgc tcttggtgaa tctgcattcg
     2521 ggtggccaag tatatgcatt tccttcatcc cagcctctaa cggaacaaag ccttgtgttg
     2581 tggcttaaaa attcacaagc gggacttgaa aaccccatca cagtcttatc cgcccaggag
     2641 tggagccctc ctctaccagc ctttgatttt ctaagcatga tggatgttcc tacatctcgg
     2701 gctcccacaa agaaagttct ggagtgtcag aaagaagcag aggtgcagga gagggctggg
     2761 cagcagcctg gagacaagtc aacaaccagg agagagccgg tggaagtgct cagaataaag
     2821 cactggaaca gaagtaaccg gccgaaggaa tcacgggagc cttttcacca tgacaaggag
     2881 ttgtgagcgg acctcctggg acggcctctc tgtggctcag gaaactcaag atcaatcctg
     2941 ttaaggaaca agactaaatt atgtcatctc tagacaagtg ccattgaatg ggattgtgat
     3001 acaaatgaca tgtaaaattt cttagaggct acacttaaaa accataaaac gagtagataa
     3061 aattgactta aagtgtactt catgcagtaa accccagaca gcttaattac tacaaaaatg
     3121 ttgagagatt taatttttaa tgtgaagtct tcaaaacact gtgcatttta cacttaatgc
     3181 cattcctgac tgtggagacc cacgtttgag ggcttcttaa ccacaggtgg tacatgactg
     3241 ctgtattgga cagcccacta tcagacaagc accggtgtga ttgacctagt tctagccatg
     3301 gtgtgcattt gaatcaaatt ggaataacta tggcatcacc gttgactctt ggtggaatca
     3361 tagctggcag ttgtatttat tttcttgtaa tcgtattaaa ccaatatttt tcagttctgc
     3421 ctttcagggt attcggcaaa atagagtttt aatattatga cttggtgata ctactggcct
     3481 ctacaggaca gaggttggag tccccctaca cctcaaccac tctacactgg atagatggat
     3541 tctccatcaa agaatggtct ttcttttaat gtcattagtt gccaaggttg cagaattagc
     3601 aaccttgcag cagcctgcag cacagtggga tctccatgtc ttcttagtct gcccagttac
     3661 tgtgtttgga aatctctgga cattaaaaat tgagtggcta tcgtatcctg attattaaaa
     3721 atcatttttt aaaaaaagat ttatttatat ttccttatgt ttttgacatg tgtggcttgc
     3781 atagtacgag tgagcttcat aactggaatt ttgtagctaa atttcaataa acctgtctgg
     3841 tgtgtttcat tgtaa
//
