LOCUS       NM_001398782            3898 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus taxilin gamma (Txlng), transcript variant 1,
            mRNA.
ACCESSION   NM_001398782 XM_006256890
VERSION     NM_001398782.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3898)
  AUTHORS   Du,K., Chen,Y., Dai,Z., Bi,Y., Cai,T., Hou,L., Chai,Y., Song,Q.,
            Chen,S., Luo,W. and Chen,J.
  TITLE     Molecular cloning and functional characterization of a mouse gene
            upregulated by lipopolysaccharide treatment reveals alternative
            splicing
  JOURNAL   Biochem Biophys Res Commun 391 (1), 267-271 (2010)
   PUBMED   19913514
REFERENCE   2  (bases 1 to 3898)
  AUTHORS   Yu,V.W., El-Hoss,J. and St-Arnaud,R.
  TITLE     FIAT inhibition increases osteoblast activity by modulating
            Atf4-dependent functions
  JOURNAL   J Cell Biochem 106 (1), 186-192 (2009)
   PUBMED   19016261
REFERENCE   3  (bases 1 to 3898)
  AUTHORS   Du,K., Chai,Y., Hou,L., Chang,W., Chen,S., Luo,W., Cai,T.,
            Zhang,X., Chen,N., Chen,Y. and Chen,J.
  TITLE     Over-expression and siRNA of a novel environmental
            lipopolysaccharide-responding gene on the cell cycle of the human
            hepatoma-derived cell line HepG2
  JOURNAL   Toxicology 243 (3), 303-310 (2008)
   PUBMED   18068885
REFERENCE   4  (bases 1 to 3898)
  AUTHORS   Yu,V.W., Ambartsoumian,G., Verlinden,L., Moir,J.M., Prud'homme,J.,
            Gauthier,C., Roughley,P.J. and St-Arnaud,R.
  TITLE     FIAT represses ATF4-mediated transcription to regulate bone mass in
            transgenic mice
  JOURNAL   J Cell Biol 169 (4), 591-601 (2005)
   PUBMED   15911876
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Dec 23, 2021 this sequence version replaced XM_006256890.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.54242.1,
                                           SRR26643290.55829.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-137               JAXUCZ010000021.1  35495902-35496038
            138-441             JAXUCZ010000021.1  35514542-35514845
            442-533             JAXUCZ010000021.1  35518788-35518879
            534-704             JAXUCZ010000021.1  35527610-35527780
            705-899             JAXUCZ010000021.1  35530889-35531083
            900-1019            JAXUCZ010000021.1  35534259-35534378
            1020-1094           JAXUCZ010000021.1  35535356-35535430
            1095-1187           JAXUCZ010000021.1  35538444-35538536
            1188-1283           JAXUCZ010000021.1  35540972-35541067
            1284-3898           JAXUCZ010000021.1  35542102-35544716
FEATURES             Location/Qualifiers
     source          1..3898
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq14"
     gene            1..3898
                     /gene="Txlng"
                     /note="taxilin gamma"
                     /db_xref="GeneID:302680"
                     /db_xref="RGD:1564371"
     exon            1..137
                     /gene="Txlng"
                     /inference="alignment:Splign:2.1.0"
     CDS             27..1619
                     /gene="Txlng"
                     /note="isoform 1 is encoded by transcript variant 1;
                     gamma-taxilin"
                     /codon_start=1
                     /product="gamma-taxilin isoform 1"
                     /protein_id="NP_001385711.1"
                     /db_xref="GeneID:302680"
                     /db_xref="RGD:1564371"
                     /translation="MATRLEEATRGRGGGTEEAIEGGPGGRGGRRRSPPEKFEIGTME
                     EARICELGVKADMVCKSQANDILQHQDSSCGGTTKKHSLEGDEGSDFVTNTRNLVSSV
                     FCTQETREEIPGREARTGPPDGQQDSECSRNKEKTLGKEVLLLMQALNTLSTPEEKLA
                     ALCKKYADLLEESRNVQKQMKILQKKQAQIVKEKVHLQSEHSKAILARSKLESLCREL
                     QRHNKTLKEENMQQAREEEERRKEATAHFQITLNEIQAQLEQHDIHNAKLRQENIELG
                     EKLKKLIEQYALREEHIDKVFKHKELQQQLVDAKLQQTTQLIKEADEKHQREREFLLK
                     EATESRHKYEQMKQQEVQLKQQLSLYMDKFEEFQTTMAKSNELFTTFRQEMEKMTKKI
                     KKLEKETIIWRTKWENNNKALLQMAEEKTVRDKEYKAFQIKLERLEKLCRALQTERNE
                     LNEKVEVLKEQVSIKAADGDLVSPTTQPCAVLDSFKEMNTSRALGMPLEARAKTKSVS
                     ERSAAQKPSSSGSAAQGIESVD"
     exon            138..441
                     /gene="Txlng"
                     /inference="alignment:Splign:2.1.0"
     exon            442..533
                     /gene="Txlng"
                     /inference="alignment:Splign:2.1.0"
     exon            534..704
                     /gene="Txlng"
                     /inference="alignment:Splign:2.1.0"
     exon            705..899
                     /gene="Txlng"
                     /inference="alignment:Splign:2.1.0"
     exon            900..1019
                     /gene="Txlng"
                     /inference="alignment:Splign:2.1.0"
     exon            1020..1094
                     /gene="Txlng"
                     /inference="alignment:Splign:2.1.0"
     exon            1095..1187
                     /gene="Txlng"
                     /inference="alignment:Splign:2.1.0"
     exon            1188..1283
                     /gene="Txlng"
                     /inference="alignment:Splign:2.1.0"
     exon            1284..3898
                     /gene="Txlng"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcttgtttgg ctgctgccgt cacctcatgg cgactcggct tgaggaggca acgcggggaa
       61 gaggcggcgg tactgaggag gctattgagg gcggaccggg cggacggggc ggacggcgac
      121 gcagcccccc ggagaagttt gaaattggta caatggaaga agctagaatt tgtgagttag
      181 gagtaaaagc agacatggta tgtaagtctc aagcaaatga tattcttcag catcaagact
      241 ccagttgtgg tggtacaact aagaagcatt cactggaagg ggatgaaggc agtgactttg
      301 taacgaacac cagaaatttg gtgagctcag tattctgtac ccaggagaca agagaagaaa
      361 ttcctggacg agaagctcga acaggtcctc ctgatggcca gcaagattca gagtgcagca
      421 ggaacaaaga gaagacctta ggaaaagaag ttttattact gatgcaagcg ctaaacaccc
      481 tttcaacccc agaggaaaag ctggcggctc tgtgtaagaa atatgctgat ctcctggaag
      541 aaagcaggaa tgttcagaaa caaatgaaga ttcttcagaa gaagcaagcc cagatcgtga
      601 aagagaaagt tcaccttcaa agtgaacaca gcaaggccat cttggcaaga agcaaactgg
      661 agtctctttg cagggaactt caacgtcata ataagacctt aaaggaggaa aatatgcagc
      721 aggcacgaga ggaggaagaa cggcggaagg aagcaacagc acatttccag ataactctca
      781 atgaaatcca agctcagttg gaacaacatg acatacacaa tgccaaactg cgacaggaga
      841 acattgaact gggagagaag ctgaagaaac ttattgagca gtatgcgcta agggaagagc
      901 atattgataa agtattcaaa cacaaggaat tgcaacaaca gcttgtggat gccaaacttc
      961 agcaaacaac ccagctgata aaagaagctg atgaaaaaca tcagagagag agagagtttt
     1021 tattaaaaga agcaacagaa tccaggcaca aatatgaaca aatgaaacag caagaagtac
     1081 aactaaaaca gcagctttct ctttatatgg ataaatttga agaattccag actactatgg
     1141 caaaaagcaa tgaacttttt acaaccttca ggcaggaaat ggaaaagatg acaaagaaaa
     1201 ttaaaaaact ggaaaaagaa acaataatat ggcgtaccaa atgggaaaac aataataaag
     1261 cacttctgca gatggccgaa gagaaaactg tccgtgataa agagtacaag gcctttcaaa
     1321 taaaactgga acggttagag aagctgtgca gggctcttca gacagagaga aatgagctca
     1381 acgagaaggt cgaagtcctg aaagagcagg tctctatcaa agcagcagat ggggacttgg
     1441 tgtcacctac aacacagccc tgtgctgtcc tggattcctt caaagagatg aacacttcaa
     1501 gagccctggg aatgcccttg gaggctaggg ccaagaccaa gtcagtgagt gagagaagtg
     1561 ctgcacaaaa gccctcatct tcaggttctg ctgctcaagg cattgagtca gttgactagc
     1621 gtgaagtatg accactgtat tgagagatat attttgtgta taacttcctc tgttagtagt
     1681 aactattggt tttgtggtga aaattttctt actttttcta ccatatctgt attttcttag
     1741 aactactgga cttatgtggt acaggaggct gcttagcagt ttggaatagt tttactctat
     1801 aagtttccct caactatgtt gcacatctgc ctcattttcc ccctttggag tgcatgcctt
     1861 caattctttg ttctctcttc ctgctccctg cacacaattt tcctaactaa aataacattt
     1921 aagacaacag gaattatatt ctcttcatgg ttcttcaatg taaaaacaat ttaaagtatc
     1981 ctggcccatt aatattagtc aaaggacaat acctttaata acccacttaa atacagtgta
     2041 atgggggaac tcatcagaaa caagcttagc atttttcatt caagtcagct tttcttgatt
     2101 cacttgacaa aatgaaatga ccacataacc ttgaagttct gacaaaacat ataaagatgc
     2161 tacttataaa ctagtcctat tatgctgact tcaggataga atgtacatgt caaatttgga
     2221 ctacctgact gtagaggatg gtggctaatt ttcccacttc ccacaaaaaa gattatttct
     2281 tgagaacttt ttcataagag cccctccccc atagagaatt taaattatag atcggcacta
     2341 acatttaatt tccaaagtta aaacactgga accagcattg ttttttaatc ttgggaaaac
     2401 ttggcagatt gtttacatag tcaaaaagat gtctagcttt ctggtctatt tctttgaagc
     2461 tgtacttaaa acaacaaaaa ccagtattat tgtttctaca ctttgaattg gggaatttca
     2521 aaattgagca tgtaagaagt tttagttgtg gctcagtcac gcaaattagt ataatttaca
     2581 tggaaatgct ttaagtaaaa attttaaagg ttcaagttat cccaatgcac caaattctac
     2641 tgagcaaaac tatcagactg acacttgcta agttggttac tgctaaaaat tttatttgta
     2701 aacggtcaca ttttatggtc aaaactgggt tcaaagaatt gaaaaatgtt caaatgacag
     2761 aaaacagagt ccctggagta ggaaattttt ttttatcatt gatcatgtta ttcaatgggt
     2821 cacaaaatgg aagaataaat tcataaaata agttgtaatc ttactgctgt caaagtcaga
     2881 aacaaaaaaa ttcctttcaa cagcctcttt ataaatacct tccccgcctt cagttactaa
     2941 atgaaatact ggactcattt cccacaaacg tgtattgata atataatcta ctttgaaata
     3001 attactaaca atcacatttc ataagtctgc tggatacaca gctcttaaca ttttattaag
     3061 ccatgtgtgt agcctgccac atttgtggtg cttgtcctgt gtggaagact gtaatcttcg
     3121 acctgttgca tattttcaag ggctttataa agcaatgtga ttaacagtcc tggcctgctg
     3181 cttttggctt acatgcattt ttagctagat cttcagagga tagggattct gtatgagata
     3241 catgcagaat ctctcctcct attaccctgt gaataaaaac agatgggacc tcagagaagg
     3301 ataccctccc cctaaatcga tcacctcacc agcccagtgt tgtggctttg tagcacgccc
     3361 tctatctacc gtattctaga acactgtaat gctactttgc tggcccagaa aagatttaaa
     3421 tgttgaattc acttactgca tatggtgcac taccatgcaa tcttgatgta tatttttagt
     3481 ggcagtagac cccaaaatgt agcgacaagt tgggtcttgg gtatcaggcc atttcatcct
     3541 cagacttgta gaagtacatt ttctggtctt gagacctgta tttttagtta tgtatgcaac
     3601 tgcctttatt acacacctgg ttatcacaat tcaattctca ggtgttgcag aaaaaaaatc
     3661 tacctctttc agactgtaga tggaaataac tgtgaaaaaa tgatgcagat atcttctagt
     3721 ttgtgctaaa cacactgctt tatttttaca gcccacgtct ttcatgagga tatgaattgt
     3781 taagaggcag tcttgttttg cttttcaaag acattttgta gagatttttc actaacgtga
     3841 atctgatttt atctactcaa ttctgtagag attaagtaaa tatgtatgat gaatttaa
//
