LOCUS       NM_001393687            3152 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus trans-golgi network vesicle protein 23 homolog A
            (Tvp23a), transcript variant 2, mRNA.
ACCESSION   NM_001393687
VERSION     NM_001393687.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3152)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            FQ076704.1, JACYVU010000217.1 and FQ211935.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001393687.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ076704.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132291, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-370               FQ076704.1         1-370
            371-2569            JACYVU010000217.1  4952767-4954965
            2570-2920           FQ076704.1         372-722
            2921-5119           JACYVU010000217.1  4952767-4954965
            5120-5223           FQ076704.1         724-827
            5224-5349           FQ211935.1         681-806
            5350-7548           JACYVU010000217.1  4952767-4954965
FEATURES             Location/Qualifiers
     source          1..3152
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q11"
     gene            1..3152
                     /gene="Tvp23a"
                     /gene_synonym="Fam18a; RGD1566405"
                     /note="trans-golgi network vesicle protein 23 homolog A"
                     /db_xref="GeneID:360467"
                     /db_xref="RGD:1566405"
     exon            1..133
                     /gene="Tvp23a"
                     /gene_synonym="Fam18a; RGD1566405"
                     /inference="alignment:Splign:2.1.0"
     CDS             125..766
                     /gene="Tvp23a"
                     /gene_synonym="Fam18a; RGD1566405"
                     /note="isoform 2 is encoded by transcript variant 2;
                     family with sequence similarity 18, member A; Golgi
                     apparatus membrane protein TVP23 homolog A; trans-golgi
                     network vesicle protein 23A"
                     /codon_start=1
                     /product="Golgi apparatus membrane protein TVP23 homolog A
                     isoform 2"
                     /protein_id="NP_001380616.1"
                     /db_xref="GeneID:360467"
                     /db_xref="RGD:1566405"
                     /translation="MKQGLVDDTEDVSLDFGNEEELAFRKAKIRHPLATFFHLFFRVS
                     AIVTYVCCDWFSRSFVGCFVTVLLLLSFDFWSVKNVTGRLMVGLRWWNQIDEDGKSHW
                     IFEARKVSANHMAATEAEARIFWLGLIICPVIWIMFFFSTLFSLKLKWLALVIAGISL
                     QAANLYGYVLCKMGGDGDMSTVAASFLPQTVFQTDAPGDFEKPRLEGLDIHQH"
     exon            134..213
                     /gene="Tvp23a"
                     /gene_synonym="Fam18a; RGD1566405"
                     /inference="alignment:Splign:2.1.0"
     exon            214..358
                     /gene="Tvp23a"
                     /gene_synonym="Fam18a; RGD1566405"
                     /inference="alignment:Splign:2.1.0"
     exon            359..448
                     /gene="Tvp23a"
                     /gene_synonym="Fam18a; RGD1566405"
                     /inference="alignment:Splign:2.1.0"
     exon            449..577
                     /gene="Tvp23a"
                     /gene_synonym="Fam18a; RGD1566405"
                     /inference="alignment:Splign:2.1.0"
     exon            578..706
                     /gene="Tvp23a"
                     /gene_synonym="Fam18a; RGD1566405"
                     /inference="alignment:Splign:2.1.0"
     exon            707..773
                     /gene="Tvp23a"
                     /gene_synonym="Fam18a; RGD1566405"
                     /inference="alignment:Splign:2.1.0"
     exon            774..3152
                     /gene="Tvp23a"
                     /gene_synonym="Fam18a; RGD1566405"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atagacaacc gagctgagat tcccagctgg agctcaagcc agctgctagc tgagcatcct
       61 aaaccttggg cggtaaaggg cggagctgga ggctgtgctg tagggtcaag tggtacccga
      121 gagaatgaag cagggcctag tggatgatac tgaggatgtg tccctggact tcggcaatga
      181 agaggagctg gcctttagga aagccaagat caggcacccc ctggctacct tcttccacct
      241 gttcttccga gtgagtgcca ttgtcaccta cgtgtgctgt gactggttca gcaggagctt
      301 tgtgggctgc tttgtcactg tgctcctcct cctgtccttt gacttctggt ctgtgaagaa
      361 tgtaactgga agactcatgg tgggtcttcg atggtggaac cagatagatg aggacgggaa
      421 aagccactgg atatttgaag ccagaaaggt ctctgcaaac catatggctg ccactgaagc
      481 agaggcacgc atcttctggc tgggtctcat catctgcccg gtgatctgga tcatgttctt
      541 cttcagtacc ttgttctccc tgaagctcaa gtggttggct ctcgtgattg ctggcatttc
      601 cctccaagct gcgaacctct acggctacgt cctctgtaag atggggggcg acggagacat
      661 gagcacagtt gcggccagct ttctgcccca gacagtgttt cagacggatg ccccaggtga
      721 ctttgagaag cccaggctgg aaggactgga catccaccag cattaggtga gaggctgctg
      781 tggctggtga atctggggct tcaacaaaaa aagactggcc tttgtcacag ctcttgcctt
      841 aaagagacag agaaaaggag acccttgtag aagcggtgct cttttgtgcc tgctgcagtg
      901 tggctgcctg gggctcccca ctcaaggaca gcaaaggtgg agagacacta cattgggctg
      961 tgtccctcct cagcaaccga tgattttatt tgctgagggc acaagtcagt agggtggcat
     1021 gtggccaagg cagattctag gcccaaagaa ctgtttcctc cactcggaaa gggcccagga
     1081 agctgcaatg agatccgcta acccgcagcc ctggaagatg ataatataag gaagggaacc
     1141 agctagactc tccagcagac agggagtgtg gcaaaaacat caaggactaa gaaaggaaat
     1201 gcagatgggg tgagcttctg catctctgag gaacacacat gtgaatgtgg aatatgcact
     1261 acctctgagg tgagcagaag cctcagtgca cacaccctgt cctccgccta cgccccccat
     1321 cgtgtcatct ttatggtcct tccctgcttc cacagtgtct atgtctctct ccatcctgag
     1381 gaccatatgt aacccagggg agacacagct ttgcctgtaa accttcctca gggccccagt
     1441 ccccatgccc tgttcccttc ctccctgaca ggaaaaggcc agctccccca tttgggtaca
     1501 cagtcatctg cagctggacc caatctgcct caggctcttc ctgagcccca ggcaactggc
     1561 actgctccag ctcctgctcc catcacaggc atctaccact caggcaagct ccactcttac
     1621 tgtggggaag gtgaagtctg cagggcagca gagcccctga ggcctcacag caaaccaata
     1681 cctggaatga gcctgggaga gagacagacg caaacccctc cctcagttct gaagaccatt
     1741 cagagcagaa atgtcaggat cctagacatt tcggtcccca gtagtatgtc aaagtgcagc
     1801 acaggagcgg gtgagctgtc ttggcaccag tgaccaagcg cctgccccag gtctcactgc
     1861 ttctctccca tggctgcggc ctctatggag ctctgtgggc ccagctctga cccaccactg
     1921 ctgctcctga aacaagcccc gagcgcgcta agacggccat gcatgagcaa aggcccctcg
     1981 ggaccgtgtt catgactcac ctatgtgtgg atccagcggc actttgccca gaagagggga
     2041 tcttcaaggg cctggcacat ggcctctgca cccccagtgg tgggagggaa gatctgagac
     2101 tctctctgtg gggcggaaag aggaggaagc tttattttgc ttctgcaccc taggacacac
     2161 tagttttcag acatttgaaa cagtgtcttg tttgcatgtg agactgaagc atcttcacct
     2221 gggcagtggt ggagagcttg gtggggaccc tcccttccca acacagcggg gggggaaagc
     2281 agaaacaggt ccctagagaa ccgtccctgc tgtttccccg ctaggaccag ggtgtgctta
     2341 ggcctgcccc ggggaccctc accttgcact tggggcagat gaaaccactc atgttctcta
     2401 ccacaccaat gatgggcagc ttcaccttgt gacagaaact gatctctttc cgaacatcct
     2461 gagggccacc tcctggcaga gttgacagag cggttatccc tcagccaaaa gggcagtgaa
     2521 agccacgtgt gatccaggag gtgcccggac agtcctcaga gagctcactc acctgagggg
     2581 tggtgaggat cacccgcccc atcaatgtgt gcggcagcca gatactggac caccgagagg
     2641 tgctcatcgg gacgtgccgg gtggggtgtc tattacgagg tagtccacgt ctccccagtc
     2701 tacgtctcgg aggaactgct tgatcatacc tgggagtggg caaggctgaa tgtgtgcctt
     2761 ccttccggca tacatccccg gaagcatctt cagtgtgcgt gagcattctc agcctcaaca
     2821 cagtgacact gctgtcccca gggggcagga ggtgagatct gtagacatgt tgggtggcca
     2881 tgatgaagtc aggggcgcta cagtcattat gtgtggcaca cacgtgttgt tccagcagtc
     2941 gcgtgcttaa gtgtcaaggc gagaaggtgc ttgcccagcc gtgctgcctg catcatcata
     3001 tctttcccca gaaaggggtc ttcactccac acttccctcc ttgacacaaa ccagccatgt
     3061 gacggacgcc acactacaga tcactttggg atcctgcaag tctcaagagt agaaaggctc
     3121 cccgaaggta ataaaatgtc tacactgaaa aa
//
