LOCUS       XM_039094388            2216 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tumor suppressor candidate 3 (Tusc3),
            transcript variant X1, mRNA.
ACCESSION   XM_039094388
VERSION     XM_039094388.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094388.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2216
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2216
                     /gene="Tusc3"
                     /note="tumor suppressor candidate 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 29
                     ESTs, 15 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 46 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:290783"
                     /db_xref="RGD:1303318"
     CDS             667..1713
                     /gene="Tusc3"
                     /codon_start=1
                     /product="tumor suppressor candidate 3 isoform X1"
                     /protein_id="XP_038950316.1"
                     /db_xref="GeneID:290783"
                     /db_xref="RGD:1303318"
                     /translation="MSARAAPSRRRQAGRRLRYLSTGSFPFLLLLLLLCIQLGGGQKK
                     KENLLAEKVEQLMEWSSRRSIFRMNGDKFRKFVKAPPRNYSMIVMFTALQPQRQCSVC
                     RQANEEYQILANSWRYSSAFCNKLFFGMVDYDEGTDVFQQLNMNSAPTFMHFPSKGRP
                     KRADTFDLQRIGFAAEQLAKWIADRTDVHIRVFRPPNYSGTIALALLVSLVGGLLYLR
                     RNNLEFIYNKTGWAMVSLCIVFAMTSGQMWNHIRGPPYAHKNPHNGQVSYIHGSSQAQ
                     FVAESHIILVLNAAITMGMVLLNEAATSKGDVGKRRIICLVGLGLVVFFFSFLLSIFR
                     SKYHGYPYSDLDIE"
ORIGIN      
        1 gatgtacaag atgccattta ttatgctctg ttcacttttt aaaagaaaaa tgttgacagt
       61 ctctagaaga atgcggataa ctccatgaac agtgaatgca tggcttttag ccaggtttgt
      121 ttctaagggc cctaatggaa gtgtcagaaa tcctggtaaa gtgtagaaca tttatgtgca
      181 ccgcgcacta agttctatgt tcgctactgt agggggctca agaggaggat tggagctttc
      241 cggagcaaga aggcagcaga tggcctcctg atccaggtgg aaggttggac caaccggttg
      301 cacccctgtg tgtttaaaga gcagctcggt gttggtcaga ggtgaaagta agggattcct
      361 tctagatgct ggcacacagg aagcccccga gagcgcagct gagacgcgcg cgcactgagc
      421 cgctttctcg ccacgcccac ttcctgctcc atcccgcgcc attcctggtc cctctcctgg
      481 tgaaccggat acgctgtcag tctcctcctc cgcgtccttt acctccaccc agctccctgg
      541 agaagccgct gctaccccga ggccttggcc aagagaggct gctggcgact ggcccggcgg
      601 gcgcgggcag ggtaggagct gggcgcgcac ggctaccgcg cgtggaggag acacagccct
      661 gcggccatga gtgccagggc cgctccttca cgccggagac aggcgggccg caggttgcgc
      721 tacctgtcta ctggtagctt tcccttcctc ctcttgttgc tgctgctctg catccagctc
      781 gggggcggac agaagaaaaa ggagaacctt ttggctgaaa aggtggagca gctgatggaa
      841 tggagttcca ggcgctcgat cttccgaatg aatggtgaca agttccgaaa gtttgtaaaa
      901 gccccaccgc ggaactactc catgatcgtc atgttcactg ctctgcagcc tcagaggcag
      961 tgctctgtgt gcaggcaggc taacgaagaa tatcaaatcc tggctaattc ctggcgttat
     1021 tcatctgctt tttgcaacaa actgtttttt ggaatggtgg actatgatga agggacagat
     1081 gtttttcagc agctcaacat gaactctgct cccacattca tgcattttcc ttcaaaaggc
     1141 agacccaaga gagctgatac ctttgacctt caacgaattg gatttgcagc tgaacagcta
     1201 gcaaaatgga ttgccgacag gacggatgtt catattcgag ttttccggcc acccaactac
     1261 tcaggcacca ttgctttggc cctcttagtg tcgctggttg gtggcttgct ttatttaagg
     1321 aggaacaact tggagttcat ctataacaag actggttggg ccatggtatc tctgtgtata
     1381 gtctttgcta tgacgtctgg ccagatgtgg aaccatatcc gtggacctcc atatgctcat
     1441 aagaacccac acaatggaca agtgagctac attcatggca gcagccaggc gcagtttgtg
     1501 gcagagtctc acatcattct agtactgaat gctgcaatca ccatggggat ggttcttcta
     1561 aatgaagcag caacttccaa aggggatgtc gggaaaagac ggatcatttg cctcgtggga
     1621 ttgggcctgg tggtcttctt cttcagtttt ctactttcaa tatttcgttc aaagtaccat
     1681 ggctatccat atagtgatct ggacattgag tgagaagatg tgattgggac caaggcactt
     1741 aaaactctgt accctcagct ttttaattaa atgaagtcac ctcggactat cataaagtga
     1801 agagaagctg ttcctgacac tatattattt ggaattcttg aggttcactc cttgttgatt
     1861 gtgatacatt agcttattct tgtataattt ttttaaactg tggattttcc taaaacattt
     1921 aatttataga aatggatgtg taacattctg taatccgcaa tggactatca aagtgttttt
     1981 aaatattctc aatgtatgct acaggagtga aataaatgac attgtaacta tgaatccatg
     2041 ctttagaact gtgtgtcttc taagtaagga taccccatgt tagtaaggag atccatggac
     2101 tgaatgtaaa agacttgcta gtactgtaca gagttagagc atatgcatga actgtgtcgt
     2161 gtggatagta attcttactt cagtctcact tataaaggat gtacactgtt acaaaa
//
