LOCUS       NM_001108748            6444 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus tubulin gamma complex component 6 (Tubgcp6),
            mRNA.
ACCESSION   NM_001108748 XM_001054588 XM_343310
VERSION     NM_001108748.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6444)
  AUTHORS   Jakobsen,L., Vanselow,K., Skogs,M., Toyoda,Y., Lundberg,E.,
            Poser,I., Falkenby,L.G., Bennetzen,M., Westendorf,J., Nigg,E.A.,
            Uhlen,M., Hyman,A.A. and Andersen,J.S.
  TITLE     Novel asymmetrically localizing components of human centrosomes
            identified by complementary proteomics methods
  JOURNAL   EMBO J 30 (8), 1520-1535 (2011)
   PUBMED   21399614
REFERENCE   2  (bases 1 to 6444)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   3  (bases 1 to 6444)
  AUTHORS   Murphy,S.M., Preble,A.M., Patel,U.K., O'Connell,K.L., Dias,D.P.,
            Moritz,M., Agard,D., Stults,J.T. and Stearns,T.
  TITLE     GCP5 and GCP6: two new members of the human gamma-tubulin complex
  JOURNAL   Mol Biol Cell 12 (11), 3340-3352 (2001)
   PUBMED   11694571
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001108748.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.41618.1,
                                           SRR26643429.28408.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-738               JAXUCZ010000007.1  122077554-122078291 c
            739-902             JAXUCZ010000007.1  122076118-122076281 c
            903-1113            JAXUCZ010000007.1  122072086-122072296 c
            1114-1287           JAXUCZ010000007.1  122069717-122069890 c
            1288-1409           JAXUCZ010000007.1  122068635-122068756 c
            1410-1485           JAXUCZ010000007.1  122067793-122067868 c
            1486-1595           JAXUCZ010000007.1  122067519-122067628 c
            1596-1687           JAXUCZ010000007.1  122067126-122067217 c
            1688-1827           JAXUCZ010000007.1  122066516-122066655 c
            1828-1977           JAXUCZ010000007.1  122065990-122066139 c
            1978-2059           JAXUCZ010000007.1  122064967-122065048 c
            2060-2148           JAXUCZ010000007.1  122064790-122064878 c
            2149-2264           JAXUCZ010000007.1  122064568-122064683 c
            2265-2403           JAXUCZ010000007.1  122063028-122063166 c
            2404-2475           JAXUCZ010000007.1  122062715-122062786 c
            2476-3934           JAXUCZ010000007.1  122061072-122062530 c
            3935-3993           JAXUCZ010000007.1  122060796-122060854 c
            3994-4147           JAXUCZ010000007.1  122060503-122060656 c
            4148-4316           JAXUCZ010000007.1  122060253-122060421 c
            4317-4458           JAXUCZ010000007.1  122060037-122060178 c
            4459-4653           JAXUCZ010000007.1  122059620-122059814 c
            4654-4786           JAXUCZ010000007.1  122059409-122059541 c
            4787-5000           JAXUCZ010000007.1  122058939-122059152 c
            5001-5200           JAXUCZ010000007.1  122058653-122058852 c
            5201-6444           JAXUCZ010000007.1  122057328-122058571 c
FEATURES             Location/Qualifiers
     source          1..6444
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..6444
                     /gene="Tubgcp6"
                     /note="tubulin gamma complex component 6"
                     /db_xref="GeneID:362980"
                     /db_xref="RGD:1307743"
     CDS             1..5292
                     /gene="Tubgcp6"
                     /note="tubulin, gamma complex associated protein 6"
                     /codon_start=1
                     /product="gamma-tubulin complex component 6"
                     /protein_id="NP_001102218.2"
                     /db_xref="GeneID:362980"
                     /db_xref="RGD:1307743"
                     /translation="MASITQLFDDLCEALLPAAQARPGQRSVNRKKAKLSLKRVAYNA
                     LFANLFQEDTHQRQPDSKLPVKNKVLMLSFDLRVGGLGPEADRLEELVEKLETAPDCP
                     FVEVGSVLDLLVQLAGSGPPQVLRRKRDYFFNNKHAGRNIPYSGYDCYDLSVFEMDVR
                     SLISGEENLCHNMVQEALQVMEAAPGTGLTTVGLFSTGDSCGDRFERDTRVSLFGALV
                     HSRTYDMDVRLDLPPVPDSADFSGLAIKVPQIVDQWEDEGFQSASNLTPDSQSEPSMT
                     PDLDLWEAVLTYEASKRRCWERIGCPPGHREEPYLTEAGRDAFDRFCRLCHGELQALS
                     GGLLQTPRPVLVEESELVKDSLNVLLGVVSATFSLCQPTQAFVVEPGVHVSGASPESI
                     SSILSEVAEYGTCYTRLSHFSLQPVVGSLCSRGLVFQAFTSGLRRYLQYYRACVLSTP
                     PTLSLLTIGFLFKKLGRQLRYLAELCGVGTVSLATSGEPRAVFPTGVKLLSYLYQEAL
                     DNCSNEHYPVLLSLLKTSCEPYTRFIHDWVYSGVFRDVYGEFMIQVNHEYLSFRDKFY
                     WTHGYVLISKEVEDCVPVFLKHIAHDVYVCGKTINLLKLCCPRHYLCWSDVPVPRISV
                     IFSLEELKEIEKDCAVYVGRMERVARYSSISKEEKELRMEIAKQELIVHAREAASRVL
                     SELSDRQMSEQIALDTRKREQFQRLKEQFVKDQERRLAARQEELGDDFSYAHELRARE
                     KRLKALEEELERKARQALVDHYSKLSAEAARREQKALWRIRRHRLESARLRFLLEDQK
                     CIQEMLRDMEAHQPQEPLSVLPSTCSQVTSLGPEHEGEGHSCDLESTELRCDCSNQPC
                     ASTPSVLKSGAGQAEEAGPFSTGLSITDFLPMGSGDEQPVGDTGAPFLEVALQSICSD
                     LSPITPGPALTAGGLQPTQSEYDFNTILRPAMATPPLPGPFRDVQNSVDSEKQHLLRD
                     MPTKPDSCIHDMQETLPCLHPLSHVTPAEGSLQPVGQLLEHMSETTVATESHASGMAP
                     CQQLSISRHVSDANIKVGDYMSDVALPRPRWNIHGHVSEANIGVGENVSDVAPSRPRW
                     NVHGHVSDASIKVGENVSDVAPSRPRWNVHGHVSDASIKVGENVSEVAPSRPRWNVHG
                     HVSDASIKVGENVSDVAPSRPRWNVHGHVSDASIKVGENVSDVAPSRPRWNVHGHVSE
                     ASIRIGENVSDVDLQPHGHVQPPLILEEPFPEAEPDLKSHQCPPDHVSQTVLCVEAQS
                     PAQECEPQLPEEMKPTICLSLGSTEEGSLQTKTLVTEPSMLGNGIPEEKGPRRNRDAE
                     DLSPCLPSSPQEDTLPSSPGPSEEVPSTEAEEARRWGKEQAYLADLTKLYRLEQYPDS
                     YESMSEPPMAHLVHHMLPRAFAFPVDPQVQSAVDESAVQLSELLTLPVLMKRSLMAPL
                     AAHVSLVNKAAVDYFFVELHLETHFEALRHFLLMEDGEFAQSLSDLLFEKLGAGQTPG
                     ELLNPLVLNSILSKALQYSLHGDTPHATNLSFALKYLPEVFAPNAPDVLSCLELRYKV
                     DWPLNIVITESCLNKYSGIFSFLLQLKLMMWTLKDICFHLKRTALVSHTAGSVQFRQL
                     QLFKHEMQHFVKVIQGYIANQILHVSWCEFRARLAVVGDLEEIQRAHAEYLHRAVFRG
                     LLTEKAAPVMNIIHSIFSLVLKFRSQLISQNWGPATGPRGAEHPNFPLMQQSYSTFKY
                     YSHFLFKVVTKLVNRGYQPHLEDFLLRINFNNYYQDS"
     exon            1..738
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            739..902
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            903..1113
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            1114..1287
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            1288..1409
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            1410..1485
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            1486..1595
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            1596..1687
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            1688..1827
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            1828..1977
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            1978..2059
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            2060..2148
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            2149..2264
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            2265..2403
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            2404..2475
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            2476..3934
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            3935..3993
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            3994..4147
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            4148..4316
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            4317..4458
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            4459..4653
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            4654..4786
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            4787..5000
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            5001..5200
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
     exon            5201..6444
                     /gene="Tubgcp6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggccagca tcacccagct gttcgatgac ctctgtgagg ctctcttacc tgctgcccag
       61 gctcgccccg gccagcgcag cgtgaacagg aaaaaggcaa agctgagtct taaaagggta
      121 gcctacaatg ctcttttcgc aaatcttttt caagaggaca cccatcagcg gcagcctgac
      181 tcgaagctcc ctgtgaaaaa caaggtcctc atgctgtcct tcgatttgag ggtcgggggc
      241 ttggggccag aggctgaccg tttggaggag cttgtagaga aacttgaaac agcccctgac
      301 tgtccttttg tggaagtggg atcagtgttg gacctcttag ttcagctggc aggaagtggc
      361 ccccctcaag tgctgcgcag gaaacgggat tacttcttta ataacaagca cgcaggccgg
      421 aacataccat acagcggcta cgattgctat gacttgagtg tgtttgaaat ggacgttcgg
      481 tcactcatct ctggggagga gaatttgtgt cataacatgg tccaggaagc ccttcaggtg
      541 atggaggctg ccccaggcac tggcctgacc accgttgggc tcttctcaac tggtgactct
      601 tgtggtgaca ggtttgagag agacactagg gtctctctct tcggtgcact tgtgcatagc
      661 cgcacatatg acatggatgt gcgactggac ctgccccctg tgccagacag cgccgacttc
      721 tctggactgg ccatcaaggt cccacagatt gtggatcagt gggaagatga aggtttccaa
      781 tcagcttcca acttaactcc cgactcccag tctgaaccaa gcatgacccc ggatttggac
      841 ctctgggaag ctgtgctcac ttatgaagcc agcaagcgga ggtgctggga gcgtattgga
      901 tgtccccctg gtcaccgaga ggagccctac ctcactgagg caggaaggga tgcctttgac
      961 aggttctgca ggctctgtca tggagaacta caggccctca gtgggggcct cctccagacc
     1021 ccaaggcctg tgctggtgga ggaaagcgag ctggtgaaag actcactgaa cgttctgctg
     1081 ggtgttgtct ctgctacatt ttccctctgt cagccgactc aagcttttgt agtggagccg
     1141 ggcgtgcacg tgtcaggtgc atctcctgaa agcatcagca gcatcctttc agaggtggcg
     1201 gagtatggga cctgttatac acgcctgagc cacttctctc tgcagcctgt ggtaggctcc
     1261 ttgtgcagca ggggcctcgt gttccaggcc ttcaccagcg gcctcaggag gtacttgcag
     1321 tattaccgcg cctgtgttct ctccactcca cctaccctaa gtctcctcac cattggcttt
     1381 ctcttcaaga agctaggccg gcagctcagg tacttggctg agctttgtgg tgttggcact
     1441 gtatccctgg cgaccagtgg agaacccagg gctgtgttcc ccactggggt gaagcttctg
     1501 tcctacctct accaggaagc actagataac tgcagtaatg aacactatcc tgtgttgctg
     1561 tccctgttga aaaccagctg tgagccctac acacggttca tccatgattg ggtgtacagt
     1621 ggtgtcttca gagatgttta tggggagttc atgatccaag ttaaccacga gtaccttagc
     1681 ttcagagaca agttttactg gacccatggc tacgtgctca tttccaaaga ggtagaggac
     1741 tgtgttcctg tgttcttgaa acacattgct cacgatgtgt atgtctgtgg aaagaccatc
     1801 aacctactga agctctgctg tccccggcat tacctttgtt ggtctgatgt ccctgtgcct
     1861 cggatctccg tgatcttctc tctcgaggaa ttgaaggaga ttgagaagga ctgtgccgtc
     1921 tatgttgggc ggatggagag agttgcacgt tatagttcta tcagcaagga ggaaaaggaa
     1981 ctacgtatgg aaattgcaaa acaagaacta attgtccatg cccgggaagc agcatccagg
     2041 gtcctgagtg agctgagtga ccggcagatg tcagaacaga ttgctctgga cacccggaag
     2101 cgagagcagt ttcagcgact gaaggaacag tttgtgaagg atcaggagag acgcctggca
     2161 gccagacaag aagagctcgg tgatgacttc agttatgccc atgaactccg tgcccgggag
     2221 aagaggctaa aggccctgga ggaagaactg gagaggaagg ccaggcaggc gctggttgat
     2281 cactatagca agttgtctgc agaggcagct cgtcgagagc agaaggctct gtggagaatc
     2341 cggaggcatc ggctggaaag tgcacgactt cgttttctcc tggaagacca gaagtgtatt
     2401 caggagatgc tgagagacat ggaggctcac cagccccagg agccactgag tgttctccca
     2461 agcacatgct ctcaggtcac gtctctcggt cccgagcatg aaggtgaagg ccatagctgt
     2521 gatctggagt ccacagaact gcgctgcgat tgttcaaacc aaccatgtgc atcaacacca
     2581 tcggtcctca agtctggggc tggacaggca gaggaagctg ggccattctc aactggtctc
     2641 agcatcacag actttctgcc catgggctct ggagatgaac agcctgtggg tgacactgga
     2701 gctcccttct tagaggtggc tctgcagagc atctgctcag acctatcccc tataacccct
     2761 ggaccggcac tcacagcagg tggcctgcag cctacccagt cagagtatga tttcaatacc
     2821 atactgaggc cagctatggc taccccccct ttaccgggac ccttccggga tgttcagaat
     2881 agtgtagaca gtgaaaaaca gcatctactg cgggatatgc ccacaaaacc agattcatgt
     2941 atccatgaca tgcaagagac tttgccttgc ctacatccac tcagtcatgt cactcctgcg
     3001 gagggcagcc tccagcctgt gggccagctc cttgaacaca tgtcagagac tactgtcgct
     3061 acagagagcc atgcttctgg aatggctcct tgccagcaac ttagcatttc cagacacgtg
     3121 tcagatgcca acatcaaggt gggagattat atgtcagacg tggctcttcc tcggccacgg
     3181 tggaatatcc atggacatgt gtcagaggcc aacattggag ttggggagaa tgtgtcggac
     3241 gtggctcctt ctcggccacg gtggaatgtc cacggacatg tgtcagatgc cagcatcaag
     3301 gttggggaga atgtgtcaga cgtggctcct tctcggccac ggtggaatgt ccacggacat
     3361 gtgtccgatg ccagcatcaa ggttggggag aatgtgtcag aagtggctcc ttctcggcca
     3421 cggtggaatg tccacggaca tgtgtcagat gccagcatca aggttgggga gaatgtgtca
     3481 gacgtggctc cttctcggcc acggtggaat gtccacggac atgtgtcaga tgccagcatc
     3541 aaggttgggg agaatgtgtc agacgtggct ccttctcggc cacggtggaa tgtccacgga
     3601 catgtgtcag aggccagtat taggattggg gagaatgtgt cagatgtgga tcttcagcca
     3661 catggacatg ttcagcctcc cttgattctg gaggagccct tcccagaagc tgagcctgac
     3721 ctcaagtccc atcagtgtcc ccctgatcat gtgtctcaga cagtcctttg tgtggaagca
     3781 cagagccctg ctcaagaatg tgagcctcaa ctacctgaag aaatgaagcc taccatctgt
     3841 ttgagccttg gcagtacaga ggaaggtagc ctccagacca agacccttgt gactgagcct
     3901 agcatgctgg gaaatggcat ccctgaagag aaaggcccaa ggaggaatag ggatgctgaa
     3961 gacctttctc catgtttacc ttcaagccca caggaagaca cactccccag tagcccaggt
     4021 cctagtgagg aggtaccaag cacagaagcg gaggaggcca gacgctgggg caaggagcaa
     4081 gcctatttgg cagatctcac gaaactgtac cgcctggagc agtacccgga cagctacgag
     4141 tccatgtcgg aacctcccat ggctcacttg gtacaccaca tgcttccccg ggccttcgcc
     4201 ttccctgttg acccccaagt gcagtcagca gtggatgaga gtgcagtgca gctgagtgag
     4261 ctgctgacgt tgcctgtgct tatgaagcgc tccctcatgg ctcctttggc tgcccatgtc
     4321 agcttggtca acaaagctgc cgtcgactac ttctttgtgg agctgcacct ggagacacac
     4381 tttgaggcac tgcggcattt cctgctgatg gaggatggag agttcgctca gtccctcagt
     4441 gacctgcttt ttgagaagct aggggctggg cagacgcctg gagagctgct caacccactg
     4501 gtccttaaca gcatcctgag caaggcactg cagtatagcc tccacgggga caccccacat
     4561 gctaccaacc tgtcttttgc cctcaagtac ctgcctgagg tgtttgcccc taatgcccca
     4621 gatgtgctga gctgcctgga gctcaggtac aaggtcgact ggcccctcaa cattgttatc
     4681 accgagagct gcctgaacaa gtacagtggg atcttctcct tcctgttgca gttgaagctc
     4741 atgatgtgga cactcaaaga catctgcttc cacctcaagc gcacagccct agtgagccac
     4801 acagctggct cagtgcagtt ccgacagctg cagctgttta agcatgagat gcagcatttt
     4861 gtgaaagtca tccagggcta cattgctaac cagatcctgc acgtcagctg gtgtgagttc
     4921 agagcccgtc tagctgtggt gggcgacctg gaggagattc agcgggccca tgccgagtac
     4981 ctacacaggg ctgttttcag gggcctactg accgagaagg cagcacccgt catgaacatc
     5041 atccatagca tcttcagcct ggtgctcaag ttccgaagcc agctcatctc tcagaactgg
     5101 ggcccggcta ccggcccccg tggtgccgag caccccaact tcccactcat gcagcagtcc
     5161 tacagcacct tcaagtacta ctcccacttc ctcttcaaag tagtgaccaa gctggtgaac
     5221 agaggctatc agccccacct ggaagacttt ttgcttcgga tcaacttcaa caactactac
     5281 caggactcct gaggacagac aggaccatgg cagtggacag agatagacct gaggaagctg
     5341 ctttatttag agccctggga gattcaacag gtgtgaggcc cagcccctgc cctttgggca
     5401 agatgcacaa gcaggtcaca aggcttactt aggcctgttt gcattactta aacatgggac
     5461 tgatatccta gcatgaagca ctgtgtgctg ggggcatctt gaatgctaga ccagggcagt
     5521 actgctaagg tagtatcaga cagagatggg tcaggttttg actggagacc tctgccgtca
     5581 tggagagacc gtgaggacag gcatcccagt ggtctcagca gctcagcagc actggggagg
     5641 cctcgggaga ctccagacat gtggagccac cgaggccttt atgaggatca tgttacgcag
     5701 agttctgctg cccagagtgg aggcctgcta ctgtaggaag actgctcgtc agtggtcctc
     5761 gccactgcct cagggcctgt ggcctcctct tcactgtggt aaggagactc tagcagcttc
     5821 aggacacgtc gcacctagag gataggtgag aaaactcggt gaggagcgta tttaatggca
     5881 tgtccatgac aggaagggta ataggcacag gtgtgcgctt gcctctgaaa agtctccatt
     5941 ttctgcagct tcaatggctt tctgtgcaat atagttcctt aggacgtact tggggttgtt
     6001 ggcatgcatg atgcgtacac gttctgcctg ccaggcagca atgtctccga caccctcctt
     6061 ctccttgtcc agacgctctc tggaatcaaa tttttccaaa gaacagcatg tgccatgccc
     6121 ccaattcggg gccatctgca gccaccttgt aagatggcca ttgtatcaag aagccagtac
     6181 agatgaccct gagggctgcc tacctgtatt cctgtagcca ggtttcccag tggtctctgt
     6241 tcttgctctg cagttcagag gggctcagct gttccagccg tgactgatgc tccacacgtt
     6301 ccagctcctt tgtgacattt gcttgagtgc caatgagtgc aaagagctgt gggttcgact
     6361 gtgccagcat cagcatcata gagagctgcc tgcagggagg ggtggccggg gaagtgcctc
     6421 agctaggggc agcacatgac tcag
//
