LOCUS       NM_001399280            5940 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus tubulin gamma complex component 4 (Tubgcp4),
            transcript variant 1, mRNA.
ACCESSION   NM_001399280 XM_002729205
VERSION     NM_001399280.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5940)
  AUTHORS   Hehnly,H. and Doxsey,S.
  TITLE     Rab11 endosomes contribute to mitotic spindle organization and
            orientation
  JOURNAL   Dev Cell 28 (5), 497-507 (2014)
   PUBMED   24561039
REFERENCE   2  (bases 1 to 5940)
  AUTHORS   Jakobsen,L., Vanselow,K., Skogs,M., Toyoda,Y., Lundberg,E.,
            Poser,I., Falkenby,L.G., Bennetzen,M., Westendorf,J., Nigg,E.A.,
            Uhlen,M., Hyman,A.A. and Andersen,J.S.
  TITLE     Novel asymmetrically localizing components of human centrosomes
            identified by complementary proteomics methods
  JOURNAL   EMBO J 30 (8), 1520-1535 (2011)
   PUBMED   21399614
REFERENCE   3  (bases 1 to 5940)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jan 5, 2022 this sequence version replaced XM_002729205.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ226171.1, SRR26643297.12687.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-277               JAXUCZ010000003.1  128595380-128595656
            278-406             JAXUCZ010000003.1  128597356-128597484
            407-529             JAXUCZ010000003.1  128599124-128599246
            530-583             JAXUCZ010000003.1  128599552-128599605
            584-640             JAXUCZ010000003.1  128600293-128600349
            641-720             JAXUCZ010000003.1  128602340-128602419
            721-922             JAXUCZ010000003.1  128607161-128607362
            923-1088            JAXUCZ010000003.1  128608038-128608203
            1089-1213           JAXUCZ010000003.1  128609611-128609735
            1214-1264           JAXUCZ010000003.1  128613117-128613167
            1265-1370           JAXUCZ010000003.1  128613514-128613619
            1371-1478           JAXUCZ010000003.1  128614742-128614849
            1479-1620           JAXUCZ010000003.1  128615173-128615314
            1621-1798           JAXUCZ010000003.1  128617761-128617938
            1799-1933           JAXUCZ010000003.1  128619354-128619488
            1934-2050           JAXUCZ010000003.1  128620887-128621003
            2051-2190           JAXUCZ010000003.1  128621588-128621727
            2191-5940           JAXUCZ010000003.1  128622204-128625953
FEATURES             Location/Qualifiers
     source          1..5940
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q35"
     gene            1..5940
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /note="tubulin gamma complex component 4"
                     /db_xref="GeneID:362203"
                     /db_xref="RGD:1306924"
     exon            1..277
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /inference="alignment:Splign:2.1.0"
     CDS             200..2203
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /note="isoform 1 is encoded by transcript variant 1;
                     gamma-tubulin complex component 4; tubulin, gamma complex
                     associated protein 4"
                     /codon_start=1
                     /product="gamma-tubulin complex component 4 isoform 1"
                     /protein_id="NP_001386209.1"
                     /db_xref="GeneID:362203"
                     /db_xref="RGD:1306924"
                     /translation="MIHELLLALSGYPGSIFTWNKRSGLQVSQDFPFLHPSETSVLNR
                     LCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQ
                     ALLDLEQEFLADPHLSISHVNYSLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKH
                     SCGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQM
                     EEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKI
                     LFVGESVQMFENQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDGIRS
                     TVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDV
                     NVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKDHKADATQPREVPSRETSPREPPSSGW
                     AALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSN
                     QTDAVKWRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLS
                     NLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQNLGPLDERGAAQLSILVKGFSRQSS
                     LLFKILSSVRNHQINSDLAQLLLRLDYNKYYTQAGGTLGSFGM"
     exon            278..406
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /inference="alignment:Splign:2.1.0"
     exon            407..529
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /inference="alignment:Splign:2.1.0"
     exon            530..583
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /inference="alignment:Splign:2.1.0"
     exon            584..640
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /inference="alignment:Splign:2.1.0"
     exon            641..720
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /inference="alignment:Splign:2.1.0"
     exon            721..922
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /inference="alignment:Splign:2.1.0"
     exon            923..1088
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /inference="alignment:Splign:2.1.0"
     exon            1089..1213
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /inference="alignment:Splign:2.1.0"
     exon            1214..1264
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /inference="alignment:Splign:2.1.0"
     exon            1265..1370
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /inference="alignment:Splign:2.1.0"
     exon            1371..1478
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /inference="alignment:Splign:2.1.0"
     exon            1479..1620
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /inference="alignment:Splign:2.1.0"
     exon            1621..1798
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /inference="alignment:Splign:2.1.0"
     exon            1799..1933
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /inference="alignment:Splign:2.1.0"
     exon            1934..2050
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /inference="alignment:Splign:2.1.0"
     exon            2051..2190
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /inference="alignment:Splign:2.1.0"
     exon            2191..5940
                     /gene="Tubgcp4"
                     /gene_synonym="RGD1306924"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggctccgcg gcgggagcaa acgggtgggc gcctcagccg cgcgcagcgt cccggatgtg
       61 cgcgcggctc tgtggaatgt cctcgctcgg tggactgcgg ggatccaggg caaaagattc
      121 acgctacgtg tgagcgggcg cccgcagagg cgctggaaga gaaggtggta gatctaggga
      181 ctccggagcc gccccagaaa tgattcacga gctgctcttg gccctgagcg ggtacccagg
      241 gtccattttc acctggaaca agcggagtgg cctgcaggtt tcccaggatt ttccatttct
      301 tcacccgagt gagactagtg tcctgaatcg actctgccgg cttggcacag actacattcg
      361 attcactgag ttcattgagc agtacacagg ccatgtgcag caacaggatc accatccatc
      421 ccagcagggc caagggggac tacatgggat ctacctgaga gccttctgca cggggctgga
      481 ctcagttttg cagccttatc gccaagcact gcttgatttg gaacaagagt tcctggctga
      541 cccgcatctc tccatatcac atgtcaatta ctccttagat cagttccagc tccttttccc
      601 ctctgtgatg gttgtagtgg agcaaattaa aagccaaaag attcatggct gtcaaatcct
      661 ggaaacagtt tacaaacata gctgcggggg cttgcctcca gttcgaagcg cattagaaaa
      721 aatcctggct gtatgccatg gagtcatgta taaacagctc tcggcctgga tgctgcatgg
      781 actgctcttg gaccagcacg aagagttctt cattaaacag ggtccatctt ctggtaatgt
      841 cagtgcccag atggaagagg atgaggaaga tctgggcatt ggaggcctga caggaaaaca
      901 actgagagaa ctgcaggacc tgcgcctaat tgaggaagag aatatgctgg ccccatctct
      961 aaagcagttt tctctgaggg tagagatttt accatcctac attccagtga gagttgctga
     1021 aaaaatcctc tttgttggag aatctgtcca gatgtttgag aatcaaaatg tgaacctgac
     1081 aaggaaaggg tccatcttga aaaaccagga ggacactttt gctgccgagc tgcaccggct
     1141 caagcagcag ccactcttca gcctggtgga ctttgagcag gtggtagatg ggattcgtag
     1201 cactgtggct gagcaccttt ggaagctaat ggtggaagag tcagatttac tgggtcagct
     1261 aaagatcatt aaagactttt accttctggg acgaggagaa ctgttccagg ccttcattga
     1321 cacagctcaa cacatgttaa aaacaccacc cactgcagtg acagagcatg atgtgaatgt
     1381 ggcctttcag cagtcagcac acaaggtgct gctagacgac gacaaccttc tccctctgct
     1441 gcacttgacg attgagtatc atgggaagga ccacaaagca gatgccaccc agccaagaga
     1501 agtgccttct cgggaaacat ctccccggga acctccttct tccggctggg ctgctctagg
     1561 gctttcctac aaagtacaat ggccactgca cattctcttc accccagctg tcttggaaaa
     1621 gtacaatgtt gtcttcaagt acttactcag tgtgcgtcgt gtccaagctg agctgcagca
     1681 ctgctgggca ctccagatgc agcgcaagca cctcaaatcc aaccagaccg acgcagtcaa
     1741 gtggcgccta aggaaccaca tggccttctt ggtagataat ctgcagtact atctccaggt
     1801 agatgtgctg gagtctcagt tctcacagct gcttcatcag atcaactcca cgagggactt
     1861 tgaaagcatc cgattggcgc atgaccactt cctaagcaat ttgctggccc agtcctttat
     1921 tttgctgaag cctgtgtttc actgcctgaa tgagatccta gatctctgtc acagtttttg
     1981 ttcactggtc agtcagaacc tgggtccact ggatgagcgg ggagctgccc agctgagcat
     2041 tctcgtgaag ggctttagtc gccagtcttc actcctgttc aagatccttt ccagtgttcg
     2101 gaatcaccag atcaattcag atttggcgca gctactgctc cggctagact ataacaaata
     2161 ttatacccag gctggtggga ctctgggcag ttttgggatg tgaaaactca gcttcataaa
     2221 atgaagcagc agtcagccct accacgttct gatgtctgta acaaacctct ctagtcattc
     2281 atcaaatgcc tgcagactgc tgaaagggtc ttctagaaga agtccagagg tataaatcct
     2341 tcctgccatc cctgtgggaa actggggtct gagatccctc tgctgaccac acgaatgctt
     2401 tgacccttta cactaagaca tctgttggtg ggttcatttg tgtaacagtg gtttactgaa
     2461 catttactat attcctatgg aagataacca cagtaaacaa tggggatcaa taaaatattt
     2521 ttaggctagg ctcatatgta agaaagcaat catgcttatg aataggtcag cttctatatg
     2581 ttaccaccaa attagaaaac cctttagaca ggctgtgggc ttttcctctc tctgtacctt
     2641 gtaaatttgt aactacacag ataaattttt ttgggaagga taaagattat tatttgagta
     2701 tcctttatct gaagaattta tccaatgagt tccaattctt tcatattgat agaagggcaa
     2761 ttctagctaa agatgatgga ggtcagattg ttcagatttt agacattgaa aatcacaacc
     2821 cagttttccc acctcagacc tgccacagaa gctaaggttt tatggtcagg tagcctagcc
     2881 accactggct gagaacatac taatgttctt ctcatgagca taaacaaaag aaccacttta
     2941 ttgacatacc ttccctccaa gctggacaag aatgcaacac tggggcctcg gtttgtagtc
     3001 accgaatcct ctcttcatcg acactgtcta ccacccactg tgaaagcctg agccccatac
     3061 ttgtcaacta gaggggatca atcccttctg tttgttacct ctaaaagcag ggcttagcag
     3121 ataacagcct gctgcttgtt tttgtaaata ataaagccac acatactcat ttacctactg
     3181 tctatgattg ctttcgtctc aaagcagggc aagaagtgga gacagacaag tgaccacaaa
     3241 gcctaaaagt atttactaca gaaaaataga atgattatga tgatgagtgt gaggaaggaa
     3301 tagcttccag cagttgtgac aacttatttt acagaaaacc atcccagcaa aagtcactgt
     3361 ccattcatta acaactggtc atgcttccag tagcaggtca tctgttaata aactcctgac
     3421 acccagagct gtccccagtc ccactcaact ttagcactca ctacttactg ttaacacatc
     3481 tgtgccctca cttactttaa actgcgtttt tggaggcaaa catttaggta gcctgggata
     3541 accttttgat attgacagag gtgctacaga ataaagttca ttcctatatt tttatcttcc
     3601 tttgtttgct gtactgctaa agtgacaagc ctgctgaaaa acttcagaga agatcctatg
     3661 tttaccatgt tctgagatta agctcaaaga aacagatgaa gacatcccag ttactacaac
     3721 caaagagatt caacatttat tttatcataa aagtccaaca aataaaacta tgtacaaggt
     3781 ccatgcaaag aatacaatta cacacaagac acacttaaaa cctgattaaa acacaatctc
     3841 cacaatagca gggaataaaa ccagtaagac caagtatctt tagtgagaaa cataatcatg
     3901 tttgtatttt ggatgctgct ggaatccaat tctctcccca acaatgaggc actggatcac
     3961 ccattcttgt gataccacag gcagctgcaa ggcttcagca cacttgagca ccgaggctgg
     4021 gcatgagggg tctgtcacca ccacatcaaa tacccctaaa gcaatgtctg caaaaagtag
     4081 ggggaagtga atgaggaaag aacactcagt ttagctccta ttacaaaaag acagatgtgc
     4141 cttctaacca gtactcccta ctcttccaaa ccaaagccct ctgctataga tactgtatac
     4201 tcacagtcta aaataaaagt tgtaatcatc acttctgacc ttgtagaact actgaatgga
     4261 aatgccactg gagactctag aagcctgaag agcattatcc ttcaacctac atcaacctac
     4321 cctttttgaa ggtgggactt atcttaaaac tgaggacaga cttggaatac acagactaac
     4381 aagtgtcact ctaagaacat cctggaatga ctatgaagca caggtgctct ccagtacctt
     4441 tgttatgggc acttgaatga tgctgcttca cagaggctgc ccctccagtc ataaggatct
     4501 cagaccagag ctccaggaag ttctgctgtt gatctgacac caagaggacc ttcagattct
     4561 ggaaagggtt ttcacggggt tgcctgtgaa ggagttggag acagtgttta ggaactggaa
     4621 agaaacttag tatggcctgt cacatttagc aactagcact gcacagggag ccttcatgtc
     4681 tgcatgcttt tctaatgatg ccatgtactg aacatgctct gcctctcttc taaatgagag
     4741 atgcattctg ggatcccaga ctttgctagt aaacaaatca ggttaatccc tcccctctct
     4801 ctaagtttaa tgattgaaac ctgatcccaa tttcaatgct tcccctaatg gggaacactg
     4861 accacacaca ctaatctttc cacacattta atgtaaaatg aggctctgga aacaaagtac
     4921 tttaactgct gaaatcattt caaattcatt caaattctga cttagtctac agatattcca
     4981 gtttctagta acacttcaat ttctattata tttttggtta taagcctagc ctttaaagac
     5041 tgagctatct ctcctgccaa atttctcaac tagactttct tcagctctag atgggttccc
     5101 aaacactcac cagtccagaa ttcgttgctc ctcaaggcta tacccagcag gcagcagata
     5161 attacggtag ttttgaagct ggttggcatg gcagctgtca tggacccaga catgagacac
     5221 acaaggaatg ccactggcaa ggcacaggaa gtacttccgg gttcgacagt gctggtccgc
     5281 aattaggaga cactggtagg ctgtgttaca ctagaagaaa agaagcccgg ctgactggtc
     5341 tagtggtgtc taggaaaacc tttcctgatt agctgcacct aataaacccc ggagaaaaga
     5401 tgtaaagact tccaattggt gtcaaaaata ctatctaatc tgtttttgta cccaaggctg
     5461 cgatggctca ctgagaaggc caaactgctt cctgtgacag tttccttgtc tcacatcttt
     5521 aagaaggcct aaatctcaag ggtcaacaac acctggtact ccaccttcca ggctagggaa
     5581 acaccaccac accaataggt tttctactac acaagttcaa tctgtggctg tctcttcaga
     5641 gccactacca cctaccacaa ggtctagctt ctgttctttg tgtacaatga gaacactgca
     5701 cagcaccctg gacttcagcc agccacccaa aaccctctcg ggccttttct cagcacagaa
     5761 agagtagaaa gaagtcctca cctgggcttc attgaagtct tccaggatat acccagctcc
     5821 tgctcgaagc tggcattctg tatactgctt gttgaaagga ggaatttcta aaaattctgt
     5881 gtatagaaca aaaataattt ttactattat aaaatttaaa taatggtttc ctaggtgcta
//
